Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_5g08310 Fragaria vesca HOM05D003858 ORTHO05D005878 8.2e-289 996.5 557 100.0
FAN08G1590 Fragaria x ananassa HOM05D003858 ORTHO05D005878 1.0e-283 979.5 558 98.6
RcHm_v2.0_Chr7g0190211 Rosa chinensis HOM05D003858 ORTHO05D005878 7.0e-264 913.7 558 91.6
FAN18G4532 Fragaria x ananassa HOM05D003858 ORTHO05D005878 2.5e-261 905.2 559 93.2
FAN04G1110 Fragaria x ananassa HOM05D003858 ORTHO05D005878 2.8e-257 891.7 559 92.3
Thecc.03G129000 Theobroma cacao HOM05D003858 ORTHO05D005878 3.0e-222 775.4 571 76.0
Prupe.5G151200 Prunus persica HOM05D003858 ORTHO05D005878 6.6e-222 774.2 526 81.9
Ciclev10018838m.g Citrus clementina HOM05D003858 ORTHO05D005878 1.1e-219 766.9 524 79.2
MD14G1157300 Malus domestica HOM05D003858 ORTHO05D005878 3.1e-219 765.4 524 82.4
COL.COLO4_28121 Corchorus olitorius HOM05D003858 ORTHO05D005878 4.0e-219 765.0 507 78.7
Manes.06G119400 Manihot esculenta HOM05D003858 ORTHO05D005878 1.3e-217 760.0 527 80.3
Duzib205G0757 Durio zibethinus HOM05D003858 ORTHO05D005878 1.6e-215 753.1 537 73.6
Gohir.D03G114300 Gossypium hirsutum HOM05D003858 ORTHO05D005878 2.7e-215 752.3 534 77.2
TWI23G0194 Tripterygium wilfordii HOM05D003858 ORTHO05D005878 8.6e-214 747.3 531 77.2
Gorai.003G120600 Gossypium raimondii HOM05D003858 ORTHO05D005878 1.1e-213 746.9 537 76.0
CANSAT80G0729 Cannabis sativa HOM05D003858 ORTHO05D005878 5.6e-213 744.6 528 76.3
Gohir.A03G052800 Gossypium hirsutum HOM05D003858 ORTHO05D005878 2.1e-212 742.7 536 76.3
Atru.chr9.1128 Acer truncatum HOM05D003858 ORTHO05D005878 3.6e-212 741.9 524 74.6
Potri.015G096100 Populus trichocarpa HOM05D003858 ORTHO05D005878 1.1e-211 740.3 532 75.6
CiPaw.12G042900 Carya illinoinensis HOM05D003858 ORTHO05D005878 1.2e-210 736.9 525 77.0
CiPaw.15G056500 Carya illinoinensis HOM05D003858 ORTHO05D005878 1.5e-210 736.5 530 77.0
Sabra15G0116900 Salix brachista HOM05D003858 ORTHO05D005878 1.5e-210 736.5 528 79.4
GSVIVG01008542001 Vitis vinifera HOM05D003858 ORTHO05D005878 1.3e-209 733.4 524 77.7
TAR371G0204 Trochodendron aralioides HOM05D003858 ORTHO05D005878 1.7e-209 733.0 566 71.4
CSS0032323 Camellia sinensis var. sinensis HOM05D003858 ORTHO05D005878 4.9e-209 731.5 508 73.8
Sed0027713 Sechium edule HOM05D003858 ORTHO05D005878 3.2e-208 728.8 495 76.6
Nitab4.5_0005642g0040 Nicotiana tabacum HOM05D003858 ORTHO05D005878 7.1e-208 727.6 458 80.1
Actinidia08869 Actinidia chinensis HOM05D003858 ORTHO05D005878 1.6e-207 726.5 445 81.3
Cpa.g.sc250.13 Carica papaya HOM05D003858 ORTHO05D005878 1.6e-207 726.5 525 77.1
Rhsim12G0174400 Rhododendron simsii HOM05D003858 ORTHO05D005878 2.1e-207 726.1 489 76.9
Rhsim10G0051500 Rhododendron simsii HOM05D003858 ORTHO05D005878 2.7e-207 725.7 487 76.2
Dinv23145 Davidia involucrata HOM05D003858 ORTHO05D005878 4.6e-207 724.9 504 76.2
HanXRQChr02g0034711 Helianthus annuus HOM05D003858 ORTHO05D005878 7.8e-207 724.2 535 78.5
Nitab4.5_0006042g0010 Nicotiana tabacum HOM05D003858 ORTHO05D005878 1.3e-206 723.4 491 78.0
Nn4g22329 Nelumbo nucifera HOM05D003858 ORTHO05D005878 5.1e-206 721.5 531 75.7
Cfa015653 Carpinus fangiana HOM05D003858 ORTHO05D005878 6.6e-206 721.1 526 71.9
MELO3C002182.2 Cucumis melo HOM05D003858 ORTHO05D005878 8.6e-206 720.7 535 72.3
CsaV3_1G007630 Cucumis sativus L. HOM05D003858 ORTHO05D005878 7.3e-205 717.6 476 75.4
DCAR_001872 Daucus carota HOM05D003858 ORTHO05D005878 1.2e-204 716.8 530 74.9
Peaxi162Scf00119g00520 Petunia axillaris HOM05D003858 ORTHO05D005878 2.1e-204 716.1 456 79.4
vmacro16677 Vaccinium macrocarpon HOM05D003858 ORTHO05D005878 2.1e-204 716.1 440 80.9
CAN.G774.2 Capsicum annuum HOM05D003858 ORTHO05D005878 8.1e-204 714.1 442 80.8
Haze_09759 Corylus avellana HOM05D003858 ORTHO05D005878 1.8e-203 713.0 574 67.6
arahy.Tifrunner.gnm1.ann1.L81EPG Arachis hypogaea HOM05D003858 ORTHO05D005878 4.4e-202 708.4 528 74.2
ECA247G4076 Erigeron canadensis HOM05D003858 ORTHO05D005878 4.4e-202 708.4 529 76.6
PGSC0003DMG400012349 Solanum tuberosum HOM05D003858 ORTHO05D005878 2.2e-201 706.1 489 76.5
Hma1.2p1_0014F.1_g009460 Hydrangea macrophylla HOM05D003858 ORTHO05D005878 3.8e-201 705.3 494 76.9
Sopen08g029150 Solanum pennellii HOM05D003858 ORTHO05D005878 3.8e-201 705.3 458 79.0
Cc10_g13400 Coffea canephora HOM05D003858 ORTHO05D005878 4.9e-201 704.9 498 74.3
Solyc08g080850.4 Solanum lycopersicum HOM05D003858 ORTHO05D005878 3.2e-200 702.2 490 75.5
SGA_v2.0_scaffold2G01192 Striga asiatica HOM05D003858 ORTHO05D005878 4.2e-200 701.8 492 74.8
Lalb_Chr01g0021111 Lupinus albus HOM05D003858 ORTHO05D005878 5.4e-200 701.4 526 74.9
Hund02439 Selenicereus undatus HOM05D003858 ORTHO05D005878 9.3e-200 700.7 529 73.0
Lj5C96T4 Lonicera japonica HOM05D003858 ORTHO05D005878 1.2e-199 700.3 497 73.6
arahy.Tifrunner.gnm1.ann1.LEEI49 Arachis hypogaea HOM05D003858 ORTHO05D005878 2.1e-199 699.5 528 74.2
SGA_v2.0_scaffold28G11963 Striga asiatica HOM05D003858 ORTHO05D005878 2.1e-199 699.5 460 77.4
Haze_07135 Corylus avellana HOM05D003858 ORTHO05D005878 4.6e-199 698.4 533 72.2
Lsat_1_v5_gn_1_28960 Lactuca sativa HOM05D003858 ORTHO05D005878 1.7e-198 696.4 436 80.7
QL10p002959 Quercus lobata HOM05D003858 ORTHO05D005878 8.7e-198 694.1 526 72.1
SalBow6G4120 Salvia bowleyana HOM05D003858 ORTHO05D005878 5.6e-197 691.4 530 75.7
TPR.G2433 Trifolium pratense HOM05D003858 ORTHO05D005878 1.3e-196 690.3 457 76.4
Oeu001550.1 Olea europaea HOM05D003858 ORTHO05D005878 1.6e-196 689.9 511 72.8
Glyma.18G230300 Glycine max HOM05D003858 ORTHO05D005878 6.9e-195 684.5 417 82.5
Lj1g0027711 Lotus japonicus HOM05D003858 ORTHO05D005878 1.2e-194 683.7 462 76.2
DCAR_021618 Daucus carota HOM05D003858 ORTHO05D005878 4.4e-194 681.8 537 67.2
Migut.N03254 Erythranthe guttata HOM05D003858 ORTHO05D005878 4.4e-194 681.8 447 77.2
Eucgr.E01497 Eucalyptus grandis HOM05D003858 ORTHO05D005878 9.9e-194 680.6 525 71.8
PGR004G1062 Punica granatum HOM05D003858 ORTHO05D005878 1.7e-193 679.9 559 67.3
A04p19370 Brassica napus HOM05D003858 ORTHO05D005878 1.4e-192 676.8 523 74.2
AT5G37350 Arabidopsis thaliana HOM05D003858 ORTHO05D005878 3.2e-192 675.6 523 71.3
Glyma.09G261800 Glycine max HOM05D003858 ORTHO05D005878 3.2e-192 675.6 416 82.5
Sp4g03970 Schrenkiella parvula HOM05D003858 ORTHO05D005878 9.3e-192 674.1 523 73.4
Phvul.008G067600 Phaseolus vulgaris HOM05D003858 ORTHO05D005878 1.2e-191 673.7 417 80.8
Sc10g0010460 Simmondsia chinensis HOM05D003858 ORTHO05D005878 1.2e-191 673.7 523 74.2
BcaC02g08384 Brassica carinata HOM05D003858 ORTHO05D005878 2.7e-191 672.5 419 79.0
C04p54940 Brassica napus HOM05D003858 ORTHO05D005878 2.7e-191 672.5 419 79.0
PSO478G4955 Papaver somniferum HOM05D003858 ORTHO05D005878 6.0e-191 671.4 420 78.8
Ah.01g020640 Amaranthus hybridus HOM05D003858 ORTHO05D005878 1.3e-190 670.2 548 71.2
AUR62028258 Chenopodium quinoa HOM05D003858 ORTHO05D005878 2.3e-190 669.5 430 78.8
AT2G24990 Arabidopsis thaliana HOM05D003858 ORTHO05D005878 3.9e-190 668.7 523 73.4
AL4G16080 Arabidopsis lyrata HOM05D003858 ORTHO05D005878 5.1e-190 668.3 523 70.2
BraA04t17533Z Brassica rapa HOM05D003858 ORTHO05D005878 5.1e-190 668.3 523 73.2
Aqoxy3G00800 Aquilegia oxysepala HOM05D003858 ORTHO05D005878 8.7e-190 667.5 535 66.0
BcaB06g28028 Brassica carinata HOM05D003858 ORTHO05D005878 1.5e-189 666.8 419 78.0
PSO017G3328 Papaver somniferum HOM05D003858 ORTHO05D005878 7.3e-189 664.5 499 70.9
THA.LOC104800505 Tarenaya hassleriana HOM05D003858 ORTHO05D005878 4.8e-188 661.8 530 69.6
Thhalv10000120m.g Eutrema salsugineum HOM05D003858 ORTHO05D005878 6.2e-188 661.4 419 77.6
Carub.0004s0455 Capsella rubella HOM05D003858 ORTHO05D005878 8.1e-188 661.0 523 71.3
BolC4t27030H Brassica oleracea HOM05D003858 ORTHO05D005878 1.4e-187 660.2 523 73.0
Aa31sc86G50 Aethionema arabicum HOM05D003858 ORTHO05D005878 3.1e-187 659.1 419 77.3
CDE05G2345 Ceratophyllum demersum HOM05D003858 ORTHO05D005878 5.3e-187 658.3 492 70.1
VMungo1383G3568 Vigna mungo HOM05D003858 ORTHO05D005878 4.9e-185 651.7 457 73.7
CARHR116740 Cardamine hirsuta HOM05D003858 ORTHO05D005878 2.4e-184 649.4 523 68.8
Medtr7g090710 Medicago truncatula HOM05D003858 ORTHO05D005878 7.1e-184 647.9 490 69.6
EL10Ac9g21903 Beta vulgaris HOM05D003858 ORTHO05D005878 2.1e-180 636.3 420 76.9
SalBow7G4372 Salvia bowleyana HOM05D003858 ORTHO05D005878 9.3e-176 620.9 547 68.7
AL7G45930 Arabidopsis lyrata HOM05D003858 ORTHO05D005878 6.0e-175 618.2 523 67.9
RcHm_v2.0_Chr5g0020401 Rosa chinensis HOM05D003858 ORTHO05D005878 2.3e-174 616.3 489 65.2
VMungo1383G2243 Vigna mungo HOM05D003858 ORTHO05D005878 1.3e-172 610.5 496 66.1
Aa31LG8G17300 Aethionema arabicum HOM05D003858 ORTHO05D005878 1.8e-171 606.7 523 68.8
ClCG01G014690 Citrullus lanatus HOM05D003858 ORTHO05D005878 4.1e-171 605.5 560 63.6
Psat3g110800 Pisum sativum HOM05D003858 ORTHO05D005878 4.6e-167 592.0 493 65.5
unitig_21.g20184 Utricularia gibba HOM05D003858 ORTHO05D005878 5.1e-166 588.6 527 66.2
SEGI_19941 Sequoiadendron giganteum HOM05D003858 ORTHO05D005878 8.7e-166 587.8 410 71.0
ATR0559G302 Amborella trichopoda HOM05D003858 ORTHO05D005878 3.3e-165 585.9 510 63.3
AUR62003032 Chenopodium quinoa HOM05D003858 ORTHO05D005878 1.3e-164 583.9 356 81.5
HPP92_020969 Vanilla planifolia HOM05D003858 ORTHO05D005878 2.0e-162 576.6 503 61.6
MBI07_g31017_MAGBIO Magnolia biondii HOM05D003858 ORTHO05D005878 7.2e-160 568.2 422 72.7
AUR62007839 Chenopodium quinoa HOM05D003858 ORTHO05D005878 1.2e-159 567.4 396 74.2
FvH4_5g16770 Fragaria vesca HOM05D003858 ORTHO05D005878 6.1e-159 565.1 481 62.0
Zm00001eb256840 Zea mays HOM05D003858 ORTHO05D005878 6.1e-159 565.1 508 61.2
FAN16G2509 Fragaria x ananassa HOM05D003858 ORTHO05D005878 1.4e-158 563.9 481 61.5
TAR629G0830 Trochodendron aralioides HOM05D003858 ORTHO05D005878 1.8e-158 563.5 396 73.5
Os07g0162300 Oryza sativa ssp. japonica HOM05D003858 ORTHO05D005878 5.1e-158 562.0 473 64.5
Zm00001eb103140 Zea mays HOM05D003858 ORTHO05D005878 2.5e-157 559.7 512 60.7
TPR.G23280 Trifolium pratense HOM05D003858 ORTHO05D005878 1.3e-156 557.4 426 68.8
MD06G1142000 Malus domestica HOM05D003858 ORTHO05D005878 1.8e-155 553.5 519 68.0
PSO170G6136 Papaver somniferum HOM05D003858 ORTHO05D005878 1.0e-153 547.7 485 60.6
Ca_07893_v3 Cicer arietinum L. HOM05D003858 ORTHO05D005878 6.7e-150 535.0 425 65.9
Mapoly0084s0039 Marchantia polymorpha HOM05D003858 ORTHO05D005878 1.3e-148 530.8 456 61.8
FAN20G1682 Fragaria x ananassa HOM05D003858 ORTHO05D005878 4.5e-146 522.3 496 57.9
SMO117G0291 Selaginella moellendorffii HOM05D003858 ORTHO05D005878 3.6e-143 512.7 426 63.1
Lj7A11G39 Lonicera japonica HOM05D003858 ORTHO05D005878 7.0e-139 498.4 499 54.3
Medtr7g076710 Medicago truncatula HOM05D003858 ORTHO05D005878 2.0e-133 480.3 357 68.1
Lj7A12G16 Lonicera japonica HOM05D003858 ORTHO05D005878 1.3e-129 467.6 452 54.2
Medtr7g012400 Medicago truncatula HOM05D003858 ORTHO05D005878 1.3e-129 467.6 434 58.5
SHI21468 Sapria himalayana HOM05D003858 ORTHO05D005878 8.8e-126 454.9 705 45.1
Pp3c21_1450 Physcomitrium patens HOM05D003858 ORTHO05D005878 1.5e-125 454.1 373 62.7
AagrBONN_evm.TU.Sc2ySwM_228.678 Anthoceros agrestis HOM05D003858 ORTHO05D005878 2.6e-125 453.4 396 58.6
PSO724G1315 Papaver somniferum HOM05D003858 ORTHO05D005878 7.5e-125 451.8 493 53.3
PSO423G0213 Papaver somniferum HOM05D003858 ORTHO05D005878 1.3e-124 451.1 498 54.4
TPR.G21069 Trifolium pratense HOM05D003858 ORTHO05D005878 4.9e-124 449.1 423 58.2
Cre13.g580900 Chlamydomonas reinhardtii HOM05D003858 ORTHO05D005878 3.5e-122 443.0 435 53.6
PSO170G3101 Papaver somniferum HOM05D003858 ORTHO05D005878 2.8e-119 433.3 491 53.0
PSO724G0964 Papaver somniferum HOM05D003858 ORTHO05D005878 9.5e-112 408.3 496 50.0
PRCOL_00003781 Prasinoderma coloniale HOM05D003858 ORTHO05D005878 3.6e-111 406.4 403 52.9
PSO724G1140 Papaver somniferum HOM05D003858 ORTHO05D005878 4.7e-111 406.0 496 50.8
RcHm_v2.0_Chr5g0063291 Rosa chinensis HOM05D003858 ORTHO05D005878 5.4e-107 392.5 509 47.5
RcHm_v2.0_Chr5g0063241 Rosa chinensis HOM05D003858 ORTHO05D005878 2.0e-106 390.6 476 50.0
MCO12G200 Micromonas commoda HOM05D003858 ORTHO05D005878 2.7e-106 390.2 341 59.2
Ca_28300_v3 Cicer arietinum L. HOM05D003858 ORTHO05D005878 5.4e-99 365.9 385 60.0
SHI21367 Sapria himalayana HOM05D003858 ORTHO05D005878 3.0e-97 360.1 462 47.4
PSO063G1302 Papaver somniferum HOM05D003858 ORTHO05D005878 1.5e-93 347.8 280 65.4
CBR_g61467 Chara braunii HOM05D003858 ORTHO05D005878 2.7e-90 337.0 300 58.0
Zm00001eb256780 Zea mays HOM05D003858 ORTHO05D005878 1.2e-87 328.2 251 70.5
Haze_27048 Corylus avellana HOM05D003858 ORTHO05D005878 9.9e-85 318.5 373 45.6
DCAR_029022 Daucus carota HOM05D003858 ORTHO05D005878 2.2e-84 317.4 493 41.8
CDE05G1919 Ceratophyllum demersum HOM05D003858 ORTHO05D015239 1.6e-79 301.2 263 64.3
arahy.Tifrunner.gnm1.ann1.RIH0QL Arachis hypogaea HOM05D003858 ORTHO05D015239 4.2e-75 286.6 265 66.0
Cfa023770 Carpinus fangiana HOM05D003858 ORTHO05D005878 1.0e-73 282.0 330 47.3
PSO421G0376 Papaver somniferum HOM05D003858 ORTHO05D015239 1.4e-67 261.5 349 47.3
Actinidia36803 Actinidia chinensis HOM05D003858 ORTHO05D015239 1.2e-66 258.5 172 73.8
Actinidia36804 Actinidia chinensis HOM05D003858 ORTHO05D005878 3.9e-49 200.3 281 47.3
Cc10_g13370 Coffea canephora HOM05D003858 ORTHO05D015239 1.7e-39 168.3 98 78.6
FAN08G1067 Fragaria x ananassa HOM05D003858 ORTHO05D015239 2.1e-34 151.4 256 41.0
FAN13G2455 Fragaria x ananassa HOM05D003858 ORTHO05D015239 1.3e-31 142.1 102 67.6
Medtr6g024025 Medicago truncatula HOM05D003858 ORTHO05D267118 1.5e-24 118.6 106 58.5
FvH4_3g12461 Fragaria vesca HOM05D000004 ORTHO05D000002 9.7e-24 115.9 144 45.8
PSO675G5360 Papaver somniferum HOM05D003858 ORTHO05D015239 1.1e-22 112.5 220 40.5
Zm00001eb256800 Zea mays HOM05D003858 ORTHO05D033539 1.4e-22 112.1 121 56.2
AUR62028260 Chenopodium quinoa HOM05D008347 ORTHO05D006373 1.8e-22 111.7 93 68.8
BolC8t51470H Brassica oleracea HOM05D003858 ORTHO05D015239 3.5e-21 107.5 122 48.4
FAN21G1362 Fragaria x ananassa HOM05D003858 ORTHO05D207154 2.2e-20 104.8 235 34.0
CBR_g61468 Chara braunii HOM05D003858 ORTHO05D131775 2.9e-20 104.4 154 44.8
FAN08G1033 Fragaria x ananassa HOM05D003858 ORTHO05D005878 3.8e-20 104.0 70 67.1
C08p38970 Brassica napus HOM05D003858 ORTHO05D033539 1.9e-19 101.7 115 53.0
TAR625G0709 Trochodendron aralioides HOM05D003858 ORTHO05D015239 1.4e-17 95.5 45 95.6
FvH4_5g25261 Fragaria vesca HOM05D003858 ORTHO05D015239 1.2e-16 92.4 74 60.8
BolC8t51471H Brassica oleracea HOM05D003858 ORTHO05D033539 7.5e-16 89.7 115 49.6
HanXRQChr13g0426321 Helianthus annuus HOM05D003858 ORTHO05D000008 2.0e-13 81.6 75 48.0
Zm00001eb256810 Zea mays HOM05D003858 ORTHO05D005878 2.0e-13 81.6 124 39.5
COL.COLO4_09285 Corchorus olitorius HOM05D003858 ORTHO05D155188 3.8e-12 77.4 46 82.6
ECA247G3860 Erigeron canadensis HOM05D000031 ORTHO05D000030 1.5e-11 75.5 109 46.8
BcaC07g40899 Brassica carinata HOM05D003858 ORTHO05D015239 5.5e-11 73.6 96 43.8
ECA247G3834 Erigeron canadensis HOM05D000031 ORTHO05D000030 5.5e-11 73.6 101 41.6
FAN13G0915 Fragaria x ananassa HOM05D003858 ORTHO05D204259 1.4e-09 68.9 103 45.6
DCAR_007996 Daucus carota HOM05D003858 ORTHO05D176634 6.8e-09 66.6 51 62.7
Peaxi162Scf00586g00512 Petunia axillaris HOM05D004480 ORTHO05D005546 1.2e-08 65.9 199 25.1
CiPaw.05G188800 Carya illinoinensis HOM05D003858 ORTHO05D127864 9.8e-08 62.8 29 96.6
Nitab4.5_0002844g0040 Nicotiana tabacum HOM05D004480 ORTHO05D005546 1.3e-07 62.4 210 24.8
Potri.017G001100 Populus trichocarpa HOM05D004480 ORTHO05D005546 1.8e-06 58.5 199 23.6


User provided reference genes

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