Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_5g08220 Fragaria vesca HOM05D004830 ORTHO05D005310 7.1e-110 400.6 199 100.0
FAN18G1516 Fragaria x ananassa HOM05D004830 ORTHO05D005310 3.3e-107 391.7 199 98.5
FAN08G1417 Fragaria x ananassa HOM05D004830 ORTHO05D005310 2.0e-104 382.5 199 96.5
FAN13G1978 Fragaria x ananassa HOM05D004830 ORTHO05D005310 2.6e-104 382.1 199 96.0
RcHm_v2.0_Chr7g0190301 Rosa chinensis HOM05D004830 ORTHO05D005310 5.3e-97 357.8 199 91.0
MD06G1142500 Malus domestica HOM05D004830 ORTHO05D005310 4.9e-87 324.7 198 81.8
Prupe.5G151800 Prunus persica HOM05D004830 ORTHO05D005310 1.1e-86 323.6 198 82.3
TAR622G0015 Trochodendron aralioides HOM05D004830 ORTHO05D005310 1.5e-75 286.6 193 74.6
Cfa018828 Carpinus fangiana HOM05D004830 ORTHO05D005310 1.9e-75 286.2 198 73.2
Atru.chr9.1044 Acer truncatum HOM05D004830 ORTHO05D005310 9.6e-75 283.9 199 73.9
QL10p003269 Quercus lobata HOM05D004830 ORTHO05D005310 6.3e-74 281.2 198 72.2
Ciclev10022323m.g Citrus clementina HOM05D004830 ORTHO05D005310 1.8e-73 279.6 199 72.4
GSVIVG01008536001 Vitis vinifera HOM05D004830 ORTHO05D005310 2.6e-72 275.8 198 70.2
Aqoxy7G00964 Aquilegia oxysepala HOM05D004830 ORTHO05D005310 3.4e-72 275.4 197 71.1
CiPaw.11G008200 Carya illinoinensis HOM05D004830 ORTHO05D005310 3.4e-72 275.4 198 71.2
CSS0034026 Camellia sinensis var. sinensis HOM05D004830 ORTHO05D005310 1.3e-71 273.5 183 74.9
Rhsim12G0174200 Rhododendron simsii HOM05D004830 ORTHO05D005310 2.9e-71 272.3 198 69.7
QL10p003210 Quercus lobata HOM05D004830 ORTHO05D005310 1.9e-70 269.6 198 70.2
Actinidia08868 Actinidia chinensis HOM05D004830 ORTHO05D005310 4.2e-70 268.5 184 73.9
Aqoxy5G03391 Aquilegia oxysepala HOM05D004830 ORTHO05D005310 7.2e-70 267.7 185 71.9
Duzib084G0035 Durio zibethinus HOM05D004830 ORTHO05D005310 7.2e-70 267.7 199 67.3
Manes.14G051600 Manihot esculenta HOM05D004830 ORTHO05D005310 9.3e-70 267.3 200 69.5
ATR0561G210 Amborella trichopoda HOM05D004830 ORTHO05D005310 3.9e-68 261.9 194 70.6
Thecc.03G128400 Theobroma cacao HOM05D004830 ORTHO05D005310 3.9e-68 261.9 186 68.8
Cpa.g.sc13.124 Carica papaya HOM05D004830 ORTHO05D005310 8.7e-68 260.8 184 70.7
PSO063G3292 Papaver somniferum HOM05D004830 ORTHO05D005310 8.7e-68 260.8 190 69.5
Potri.012G097200 Populus trichocarpa HOM05D004830 ORTHO05D005310 1.1e-67 260.4 199 68.3
QL10p003237 Quercus lobata HOM05D004830 ORTHO05D005310 1.1e-67 260.4 185 71.9
Gohir.A03G052400 Gossypium hirsutum HOM05D004830 ORTHO05D005310 1.5e-67 260.0 187 69.0
COL.COLO4_28101 Corchorus olitorius HOM05D004830 ORTHO05D005310 7.4e-67 257.7 212 63.7
Gorai.003G121000 Gossypium raimondii HOM05D004830 ORTHO05D005310 7.4e-67 257.7 187 69.0
Lj5A97T92 Lonicera japonica HOM05D004830 ORTHO05D005310 1.6e-66 256.5 187 70.1
MSTRG.11282 Avicennia marina HOM05D004830 ORTHO05D005310 3.7e-66 255.4 195 65.1
Migut.I00505 Erythranthe guttata HOM05D004830 ORTHO05D005310 3.7e-66 255.4 190 66.8
PSO782G4089 Papaver somniferum HOM05D004830 ORTHO05D005310 1.4e-65 253.4 190 66.8
Oeu056012.1 Olea europaea HOM05D004830 ORTHO05D005310 6.9e-65 251.1 196 65.3
ATR0332G003 Amborella trichopoda HOM05D004830 ORTHO05D005310 3.4e-64 248.8 194 69.1
Glyma.06G170600 Glycine max HOM05D004830 ORTHO05D005310 3.4e-64 248.8 199 63.8
Lalb_Chr11g0069591 Lupinus albus HOM05D004830 ORTHO05D005310 4.5e-64 248.4 192 61.5
VMungo1309G0155 Vigna mungo HOM05D004830 ORTHO05D005310 1.0e-63 247.3 190 64.7
Glyma.04G195400 Glycine max HOM05D004830 ORTHO05D005310 1.3e-63 246.9 192 63.5
PGR044G2645 Punica granatum HOM05D004830 ORTHO05D005310 1.3e-63 246.9 202 63.9
Phvul.009G166700 Phaseolus vulgaris HOM05D004830 ORTHO05D005310 3.8e-63 245.4 192 64.1
Lj1g0026153 Lotus japonicus HOM05D004830 ORTHO05D005310 1.1e-62 243.8 190 63.2
arahy.Tifrunner.gnm1.ann1.CC2DBD Arachis hypogaea HOM05D004830 ORTHO05D005310 1.2e-61 240.4 183 65.6
Ca_24504_v3 Cicer arietinum L. HOM05D004830 ORTHO05D005310 6.1e-61 238.0 188 62.2
Medtr3g089170 Medicago truncatula HOM05D004830 ORTHO05D005310 1.4e-60 236.9 183 63.9
arahy.Tifrunner.gnm1.ann1.228PAQ Arachis hypogaea HOM05D004830 ORTHO05D005310 3.0e-60 235.7 183 65.0
CDE02G3469 Ceratophyllum demersum HOM05D004830 ORTHO05D005310 8.8e-60 234.2 200 60.0
Eucgr.K02732 Eucalyptus grandis HOM05D004830 ORTHO05D005310 2.0e-59 233.0 180 64.4
MBI13_g01839_MAGBIO Magnolia biondii HOM05D004830 ORTHO05D005310 6.9e-57 224.6 146 76.0
Nitab4.5_0002855g0030 Nicotiana tabacum HOM05D004830 ORTHO05D005310 1.5e-56 223.4 186 61.3
Peaxi162Scf00536g00113 Petunia axillaris HOM05D004830 ORTHO05D005310 1.3e-55 220.3 183 61.7
Nitab4.5_0002062g0020 Nicotiana tabacum HOM05D004830 ORTHO05D005310 1.9e-54 216.5 188 59.6
Lsat_1_v5_gn_4_80120 Lactuca sativa HOM05D004830 ORTHO05D005310 9.1e-49 197.6 181 58.6
Haze_07222 Corylus avellana HOM05D004830 ORTHO05D005310 1.6e-48 196.8 175 60.6
MBI11_g07465_MAGBIO Magnolia biondii HOM05D004830 ORTHO05D005310 5.0e-47 191.8 145 68.3
Nn3g16476 Nelumbo nucifera HOM05D004830 ORTHO05D005310 8.5e-47 191.0 176 58.0
ECA232G3637 Erigeron canadensis HOM05D004830 ORTHO05D005310 1.1e-46 190.7 189 55.6
Os08g0530500 Oryza sativa ssp. japonica HOM05D004830 ORTHO05D005310 1.1e-46 190.7 191 54.5
HanXRQChr09g0273121 Helianthus annuus HOM05D004830 ORTHO05D005310 1.8e-44 183.3 175 57.1
vmacro16674 Vaccinium macrocarpon HOM05D004830 ORTHO05D005310 6.7e-44 181.4 167 56.3
Dinv23140 Davidia involucrata HOM05D004830 ORTHO05D005310 3.3e-43 179.1 131 69.5
Cc00_g11930 Coffea canephora HOM05D004830 ORTHO05D005310 5.7e-43 178.3 188 53.2
unitig_8.g3032 Utricularia gibba HOM05D004830 ORTHO05D005310 1.4e-41 173.7 181 50.3
SEGI_37187 Sequoiadendron giganteum HOM05D004830 ORTHO05D005310 4.5e-40 168.7 266 39.8
Nn7g37285 Nelumbo nucifera HOM05D004830 ORTHO05D005310 4.2e-38 162.2 195 44.1
Gohir.D03G114700 Gossypium hirsutum HOM05D004830 ORTHO05D005310 2.4e-33 146.4 112 64.3
ATR0307G071 Amborella trichopoda HOM05D004830 ORTHO05D005310 1.6e-32 143.7 260 36.2
RcHm_v2.0_Chr3g0495501 Rosa chinensis HOM05D004830 ORTHO05D005310 1.7e-31 140.2 212 39.2
TAR633G1142 Trochodendron aralioides HOM05D004830 ORTHO05D005310 2.2e-31 139.8 258 34.5
FAN19G2808 Fragaria x ananassa HOM05D004830 ORTHO05D005310 1.6e-29 133.7 212 36.8
FvH4_1g29410 Fragaria vesca HOM05D004830 ORTHO05D005310 2.8e-29 132.9 212 36.8
Aqoxy2G00040 Aquilegia oxysepala HOM05D004830 ORTHO05D005310 2.3e-28 129.8 264 34.8
COL.COLO4_33470 Corchorus olitorius HOM05D004830 ORTHO05D005310 1.5e-27 127.1 254 31.9
Lalb_Chr22g0358351 Lupinus albus HOM05D004830 ORTHO05D005310 7.5e-27 124.8 252 32.9
Duzib106G0998 Durio zibethinus HOM05D004830 ORTHO05D005310 1.3e-26 124.0 254 32.3
Manes.08G155600 Manihot esculenta HOM05D004830 ORTHO05D005310 1.3e-26 124.0 249 32.1
Potri.013G068900 Populus trichocarpa HOM05D004830 ORTHO05D005310 8.3e-26 121.3 244 32.0
MD14G1012800 Malus domestica HOM05D004830 ORTHO05D005310 1.1e-25 120.9 242 33.1
TWI34G0970 Tripterygium wilfordii HOM05D004830 ORTHO05D005310 1.4e-25 120.6 261 30.7
Haze_20367 Corylus avellana HOM05D004830 ORTHO05D005310 3.1e-25 119.4 239 32.6
QL07p015956 Quercus lobata HOM05D004830 ORTHO05D005310 3.1e-25 119.4 245 31.4
Thecc.05G236700 Theobroma cacao HOM05D004830 ORTHO05D005310 4.1e-25 119.0 252 31.3
Gohir.A11G224212 Gossypium hirsutum HOM05D004830 ORTHO05D005310 9.2e-25 117.9 254 31.1
Gohir.D11G237500 Gossypium hirsutum HOM05D004830 ORTHO05D005310 9.2e-25 117.9 257 30.7
Prupe.1G058500 Prunus persica HOM05D004830 ORTHO05D005310 1.6e-24 117.1 194 38.1
TPR.G26160 Trifolium pratense HOM05D004830 ORTHO05D005310 1.6e-24 117.1 133 50.4
Glyma.19G121200 Glycine max HOM05D004830 ORTHO05D005310 2.0e-24 116.7 227 33.9
Gohir.D06G037550 Gossypium hirsutum HOM05D004830 ORTHO05D005310 2.0e-24 116.7 129 50.4
Dinv14555 Davidia involucrata HOM05D004830 ORTHO05D005310 2.7e-24 116.3 222 35.1
Lj1g0023159 Lotus japonicus HOM05D004830 ORTHO05D005310 3.5e-24 115.9 251 32.3
PSO591G0293 Papaver somniferum HOM05D004830 ORTHO05D005310 5.9e-24 115.2 243 32.1
Psat3g084280 Pisum sativum HOM05D004830 ORTHO05D005310 5.9e-24 115.2 259 32.4
CiPaw.09G053100 Carya illinoinensis HOM05D004830 ORTHO05D005310 7.8e-24 114.8 258 31.8
Ciclev10032343m.g Citrus clementina HOM05D004830 ORTHO05D005310 7.8e-24 114.8 252 30.6
PSO832G0423 Papaver somniferum HOM05D004830 ORTHO05D005310 1.0e-23 114.4 243 31.7
arahy.Tifrunner.gnm1.ann1.TSAG7F Arachis hypogaea HOM05D004830 ORTHO05D005310 1.3e-23 114.0 217 35.5
Sabra13G0059800 Salix brachista HOM05D004830 ORTHO05D005310 2.3e-23 113.2 244 32.0
Gorai.007G250900 Gossypium raimondii HOM05D004830 ORTHO05D005310 3.8e-23 112.5 251 30.7
Migut.J01591 Erythranthe guttata HOM05D004830 ORTHO05D005310 1.5e-22 110.5 260 30.8
GSVIVG01029897001 Vitis vinifera HOM05D004830 ORTHO05D005310 7.3e-22 108.2 119 45.4
Ca_03431_v3 Cicer arietinum L. HOM05D004830 ORTHO05D005310 9.5e-22 107.8 270 30.4
Atru.chr2.1607 Acer truncatum HOM05D004830 ORTHO05D005310 1.6e-21 107.1 218 32.1
Phvul.001G101700 Phaseolus vulgaris HOM05D004830 ORTHO05D005310 1.6e-21 107.1 219 34.2
MSTRG.6264 Avicennia marina HOM05D004830 ORTHO05D005310 6.1e-21 105.1 256 29.3
TPR.G23653 Trifolium pratense HOM05D004830 ORTHO05D005310 8.0e-21 104.8 258 29.8
Cpa.g.sc73.42 Carica papaya HOM05D004830 ORTHO05D005310 2.3e-20 103.2 105 43.8
VMungo1383G2348 Vigna mungo HOM05D004830 ORTHO05D005310 1.5e-19 100.5 224 33.5
MBI19_g09302_MAGBIO Magnolia biondii HOM05D004830 ORTHO05D005310 2.6e-19 99.8 96 46.9
MBI19_g15087_MAGBIO Magnolia biondii HOM05D004830 ORTHO05D005310 2.6e-19 99.8 96 46.9
PGR042G2697 Punica granatum HOM05D004830 ORTHO05D005310 4.4e-19 99.0 252 28.2
Psat5g140640 Pisum sativum HOM05D004830 ORTHO05D005310 1.3e-18 97.4 94 54.3
Eucgr.A02163 Eucalyptus grandis HOM05D004830 ORTHO05D005310 3.7e-18 95.9 254 27.2
HPP92_013617 Vanilla planifolia HOM05D004830 ORTHO05D005310 1.8e-17 93.6 114 44.7
Gohir.D08G162001 Gossypium hirsutum HOM05D004830 ORTHO05D005310 2.4e-17 93.2 64 64.1
Medtr7g087480 Medicago truncatula HOM05D004830 ORTHO05D005310 7.0e-17 91.7 274 28.1
FAN28G2201 Fragaria x ananassa HOM05D004830 ORTHO05D005310 1.0e-15 87.8 99 41.4
AagrBONN_evm.TU.Sc2ySwM_344.609 Anthoceros agrestis HOM05D004830 ORTHO05D005310 1.3e-15 87.4 133 38.3
FAN26G1469 Fragaria x ananassa HOM05D004830 ORTHO05D005310 2.3e-15 86.7 99 41.4
Cfa019887 Carpinus fangiana HOM05D004830 ORTHO05D005310 5.0e-15 85.5 239 28.0
TPR.G26134 Trifolium pratense HOM05D004830 ORTHO05D005310 1.1e-14 84.3 60 66.7
Prupe.7G025800 Prunus persica HOM05D004830 ORTHO05D005310 2.5e-14 83.2 106 39.6
Zm00001eb036570 Zea mays HOM05D004830 ORTHO05D005310 9.5e-14 81.3 241 29.9
RhsimUnG0023100 Rhododendron simsii HOM05D004830 ORTHO05D005310 2.1e-13 80.1 129 34.1
CANSAT78G0784 Cannabis sativa HOM05D004830 ORTHO05D005310 8.9e-12 74.7 204 30.9
MBI19_g47438_MAGBIO Magnolia biondii HOM05D004830 ORTHO05D005310 1.4e-09 67.4 75 54.7
DCAR_013505 Daucus carota HOM05D004830 ORTHO05D005310 2.4e-09 66.6 202 30.2
CDE04G2621 Ceratophyllum demersum HOM05D000045 ORTHO05D000067 1.3e-07 60.8 68 51.5
THA.LOC104800493 Tarenaya hassleriana HOM05D000045 ORTHO05D000067 2.3e-07 60.1 77 48.1
TAR369G0694 Trochodendron aralioides HOM05D004830 ORTHO05D005310 2.3e-07 60.1 66 54.5
Sc12g0000520 Simmondsia chinensis HOM05D000045 ORTHO05D000067 3.0e-07 59.7 64 54.7
TAR623G0545 Trochodendron aralioides HOM05D001075 ORTHO05D001779 3.9e-07 59.3 66 54.5
Dinv05235 Davidia involucrata HOM05D000045 ORTHO05D000067 6.6e-07 58.5 66 53.0
HanXRQChr03g0091681 Helianthus annuus HOM05D000045 ORTHO05D000067 8.6e-07 58.2 66 53.0
MD07G1236400 Malus domestica HOM05D063118 ORTHO05D005310 8.6e-07 58.2 36 69.4
TPR.G19401 Trifolium pratense HOM05D000045 ORTHO05D000067 8.6e-07 58.2 66 50.0
Ciclev10018084m.g Citrus clementina HOM05D000045 ORTHO05D000067 1.1e-06 57.8 112 41.1
Hma1.2p1_0218F.1_g092600 Hydrangea macrophylla HOM05D000045 ORTHO05D000067 1.1e-06 57.8 66 53.0
Nitab4.5_0002184g0130 Nicotiana tabacum HOM05D000045 ORTHO05D000067 1.1e-06 57.8 64 53.1
PGR119G0427 Punica granatum HOM05D000045 ORTHO05D000067 1.1e-06 57.8 75 48.0
Aa31LG5G8500 Aethionema arabicum HOM05D000045 ORTHO05D000067 1.5e-06 57.4 75 45.3
CDE08G0868 Ceratophyllum demersum HOM05D000045 ORTHO05D005310 1.5e-06 57.4 75 42.7
Ca_16238_v3 Cicer arietinum L. HOM05D000045 ORTHO05D000067 1.5e-06 57.4 66 51.5
Hma1.2p1_0894F.1_g233680 Hydrangea macrophylla HOM05D004830 ORTHO05D005310 1.5e-06 57.4 75 46.7
Lsat_1_v5_gn_3_115961 Lactuca sativa HOM05D000045 ORTHO05D000067 1.5e-06 57.4 77 49.4
RcHm_v2.0_Chr1g0335301 Rosa chinensis HOM05D000045 ORTHO05D000067 1.5e-06 57.4 66 51.5
Cpa.g.sc103.69 Carica papaya HOM05D004830 ORTHO05D000067 1.9e-06 57.0 77 46.8
Duzib170G0988 Durio zibethinus HOM05D000045 ORTHO05D000067 1.9e-06 57.0 112 39.3
Peaxi162Scf00526g00068 Petunia axillaris HOM05D000045 ORTHO05D000067 1.9e-06 57.0 75 49.3
Prupe.5G010000 Prunus persica HOM05D000045 ORTHO05D000067 1.9e-06 57.0 66 51.5
Hund18829 Selenicereus undatus HOM05D000045 ORTHO05D000067 1.9e-06 57.0 77 48.1
GSVIVG01025859001 Vitis vinifera HOM05D004830 ORTHO05D005310 1.9e-06 57.0 97 41.2
Rhsim13G0200800 Rhododendron simsii HOM05D000045 ORTHO05D000067 2.5e-06 56.6 66 51.5
SGA_v2.0_scaffold79G25517 Striga asiatica HOM05D000045 ORTHO05D005310 2.5e-06 56.6 66 50.0
Lj6g0022384 Lotus japonicus HOM05D000045 ORTHO05D000067 3.3e-06 56.2 66 51.5
Sopen06g030080 Solanum pennellii HOM05D000045 ORTHO05D000067 3.3e-06 56.2 64 51.6
CSS0018867 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D000067 4.3e-06 55.8 110 40.9
CSS0049479 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D000067 4.3e-06 55.8 110 40.9
Nitab4.5_0000271g0200 Nicotiana tabacum HOM05D000045 ORTHO05D000067 4.3e-06 55.8 64 51.6
CAN.G65.213 Capsicum annuum HOM05D000045 ORTHO05D000067 5.6e-06 55.5 67 53.7
Cpa.g.sc73.40 Carica papaya HOM05D004830 ORTHO05D005310 7.3e-06 55.1 66 47.0
AUR62020169 Chenopodium quinoa HOM05D000045 ORTHO05D000067 7.3e-06 55.1 64 51.6
Dinv32075 Davidia involucrata HOM05D000045 ORTHO05D000067 7.3e-06 55.1 66 50.0
Duzib168G0153 Durio zibethinus HOM05D000045 ORTHO05D000067 7.3e-06 55.1 64 51.6
Sabra09G0124000 Salix brachista HOM05D000045 ORTHO05D000067 7.3e-06 55.1 111 38.7
Solyc06g073670.4 Solanum lycopersicum HOM05D000045 ORTHO05D000067 7.3e-06 55.1 64 50.0
Actinidia37189 Actinidia chinensis HOM05D004830 ORTHO05D005310 9.5e-06 54.7 110 40.9
Manes.11G111500 Manihot esculenta HOM05D000045 ORTHO05D000067 9.5e-06 54.7 66 51.5
GSVIVG01037455001 Vitis vinifera HOM05D000045 ORTHO05D000067 9.5e-06 54.7 64 51.6


User provided reference genes

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