Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_5g08180 Fragaria vesca HOM05D004927 ORTHO05D005798 1.5e-81 306.2 165 100.0
FAN18G3853 Fragaria x ananassa HOM05D004927 ORTHO05D005798 2.7e-75 285.4 152 100.0
FAN13G0393 Fragaria x ananassa HOM05D004927 ORTHO05D005798 5.2e-74 281.2 152 98.0
FAN04G0012 Fragaria x ananassa HOM05D004927 ORTHO05D005798 2.0e-73 279.3 152 97.4
FAN08G3438 Fragaria x ananassa HOM05D004927 ORTHO05D005798 3.7e-72 275.0 152 97.4
RcHm_v2.0_Chr7g0190331 Rosa chinensis HOM05D004927 ORTHO05D005798 1.2e-70 270.0 171 90.1
Prupe.5G152100 Prunus persica HOM05D004927 ORTHO05D005798 1.1e-52 210.3 168 75.6
MD06G1142800 Malus domestica HOM05D004927 ORTHO05D005798 1.2e-46 190.3 171 70.2
Dinv11165 Davidia involucrata HOM05D004927 ORTHO05D005798 3.5e-46 188.7 171 67.3
CANSAT80G0771 Cannabis sativa HOM05D004927 ORTHO05D005798 2.3e-45 186.0 170 67.1
CiPaw.11G008400 Carya illinoinensis HOM05D004927 ORTHO05D005798 3.9e-45 185.3 171 65.5
Dinv23136 Davidia involucrata HOM05D004927 ORTHO05D005798 2.1e-43 179.5 171 63.2
TWI23G0043 Tripterygium wilfordii HOM05D004927 ORTHO05D005798 8.1e-43 177.6 169 61.5
MD14G1158000 Malus domestica HOM05D004927 ORTHO05D005798 1.4e-42 176.8 171 64.3
Actinidia25582 Actinidia chinensis HOM05D004927 ORTHO05D005798 1.8e-42 176.4 165 63.0
Manes.14G051700 Manihot esculenta HOM05D004927 ORTHO05D005798 2.0e-41 172.9 169 60.4
GSVIVG01008533001 Vitis vinifera HOM05D004927 ORTHO05D005798 2.0e-41 172.9 173 60.7
CSS0046411 Camellia sinensis var. sinensis HOM05D004927 ORTHO05D005798 3.4e-41 172.2 167 61.7
Ciclev10022591m.g Citrus clementina HOM05D004927 ORTHO05D005798 7.6e-41 171.0 171 64.9
Actinidia33102 Actinidia chinensis HOM05D004927 ORTHO05D005798 9.9e-41 170.6 169 59.8
Actinidia08867 Actinidia chinensis HOM05D004927 ORTHO05D005798 1.3e-40 170.2 166 61.4
AL8G40520 Arabidopsis lyrata HOM05D004927 ORTHO05D005798 8.4e-40 167.5 165 60.6
Potri.015G094600 Populus trichocarpa HOM05D004927 ORTHO05D005798 4.1e-39 165.2 169 58.6
Glyma.05G047500 Glycine max HOM05D004927 ORTHO05D005798 9.2e-39 164.1 156 62.8
Carub.0008s2416 Capsella rubella HOM05D004927 ORTHO05D005798 1.2e-38 163.7 164 58.5
Potri.012G096900 Populus trichocarpa HOM05D004927 ORTHO05D005798 1.6e-38 163.3 166 59.0
AT5G63460 Arabidopsis thaliana HOM05D004927 ORTHO05D005798 2.7e-38 162.5 165 59.4
Sp2g26540 Schrenkiella parvula HOM05D004927 ORTHO05D005798 3.5e-38 162.2 163 58.9
Gohir.D11G039650 Gossypium hirsutum HOM05D004927 ORTHO05D005798 4.6e-38 161.8 166 62.0
CiPaw.12G042500 Carya illinoinensis HOM05D004927 ORTHO05D005798 6.0e-38 161.4 171 58.5
TWI39G0602 Tripterygium wilfordii HOM05D004927 ORTHO05D005798 6.0e-38 161.4 165 58.2
Thhalv10005047m.g Eutrema salsugineum HOM05D004927 ORTHO05D005798 1.7e-37 159.8 165 57.6
vmacro19200 Vaccinium macrocarpon HOM05D004927 ORTHO05D005798 2.3e-37 159.5 161 60.9
Duzib068G0304 Durio zibethinus HOM05D004927 ORTHO05D005798 3.0e-37 159.1 168 60.1
Duzib205G1407 Durio zibethinus HOM05D004927 ORTHO05D005798 8.6e-37 157.5 169 59.8
Gohir.A11G036100 Gossypium hirsutum HOM05D004927 ORTHO05D005798 1.1e-36 157.1 166 60.2
Lj4g0014142 Lotus japonicus HOM05D004927 ORTHO05D005798 1.9e-36 156.4 157 62.4
Thecc.03G128000 Theobroma cacao HOM05D004927 ORTHO05D005798 1.9e-36 156.4 168 60.1
THA.LOC104818187 Tarenaya hassleriana HOM05D004927 ORTHO05D005798 2.5e-36 156.0 167 58.1
PGR083G0131 Punica granatum HOM05D004927 ORTHO05D005798 3.3e-36 155.6 170 58.2
THA.LOC104798947 Tarenaya hassleriana HOM05D004927 ORTHO05D005798 4.3e-36 155.2 168 57.1
Gorai.007G042600 Gossypium raimondii HOM05D004927 ORTHO05D005798 9.6e-36 154.1 170 60.0
Phvul.003G210400 Phaseolus vulgaris HOM05D004927 ORTHO05D005798 9.6e-36 154.1 156 60.3
Solyc03g111270.2 Solanum lycopersicum HOM05D004927 ORTHO05D005798 2.1e-35 152.9 167 55.7
Sopen03g030400 Solanum pennellii HOM05D004927 ORTHO05D005798 2.1e-35 152.9 167 55.7
Aa31LG1G18580 Aethionema arabicum HOM05D004927 ORTHO05D005798 6.2e-35 151.4 167 56.3
Nn3g16487 Nelumbo nucifera HOM05D004927 ORTHO05D005798 8.1e-35 151.0 168 57.1
CARHR277310 Cardamine hirsuta HOM05D004927 ORTHO05D005798 1.4e-34 150.2 165 55.8
MSTRG.11279 Avicennia marina HOM05D004927 ORTHO05D005798 1.8e-34 149.8 175 57.1
MELO3C026211.2 Cucumis melo HOM05D004927 ORTHO05D005798 5.2e-34 148.3 155 56.8
Glyma.17G129300 Glycine max HOM05D004927 ORTHO05D005798 6.9e-34 147.9 146 62.3
CsaV3_1G000620 Cucumis sativus L. HOM05D004927 ORTHO05D005798 2.6e-33 146.0 155 56.1
Sabra12G0070900 Salix brachista HOM05D004927 ORTHO05D005798 2.6e-33 146.0 172 53.5
Sed0011812 Sechium edule HOM05D004927 ORTHO05D005798 3.4e-33 145.6 151 57.6
MSTRG.4598 Avicennia marina HOM05D004927 ORTHO05D005798 9.9e-33 144.1 162 54.9
BcaC04g23330 Brassica carinata HOM05D004927 ORTHO05D005798 9.9e-33 144.1 163 54.6
Manes.06G118800 Manihot esculenta HOM05D004927 ORTHO05D005798 1.3e-32 143.7 156 57.1
Cc04_g10030 Coffea canephora HOM05D004927 ORTHO05D005798 2.9e-32 142.5 167 55.1
Atru.chr9.1061 Acer truncatum HOM05D004927 ORTHO05D005798 3.8e-32 142.1 157 59.2
Medtr4g103580 Medicago truncatula HOM05D004927 ORTHO05D005798 1.1e-31 140.6 156 53.2
Oeu056013.1 Olea europaea HOM05D004927 ORTHO05D005798 1.4e-31 140.2 169 53.3
MBI07_g34620_MAGBIO Magnolia biondii HOM05D004927 ORTHO05D005798 1.9e-31 139.8 167 55.7
HanXRQChr07g0193231 Helianthus annuus HOM05D004927 ORTHO05D005798 5.4e-31 138.3 166 53.0
Nitab4.5_0003005g0020 Nicotiana tabacum HOM05D004927 ORTHO05D005798 1.2e-30 137.1 171 52.0
Rhsim08G0189300 Rhododendron simsii HOM05D004927 ORTHO05D005798 1.2e-30 137.1 184 51.1
Lalb_Chr12g0202181 Lupinus albus HOM05D004927 ORTHO05D005798 2.7e-30 136.0 154 53.2
ECA247G2750 Erigeron canadensis HOM05D004927 ORTHO05D005798 4.6e-30 135.2 175 50.9
Lalb_Chr13g0297281 Lupinus albus HOM05D004927 ORTHO05D005798 7.8e-30 134.4 150 54.0
HanXRQChr09g0273101 Helianthus annuus HOM05D004927 ORTHO05D005798 1.0e-29 134.0 149 51.7
Lsat_1_v5_gn_1_29040 Lactuca sativa HOM05D004927 ORTHO05D005798 1.0e-29 134.0 156 55.1
Oeu018539.1 Olea europaea HOM05D004927 ORTHO05D005798 1.7e-29 133.3 162 51.9
Dinv04882 Davidia involucrata HOM05D004927 ORTHO05D005798 2.3e-29 132.9 129 62.8
Sabra15G0116000 Salix brachista HOM05D004927 ORTHO05D005798 3.9e-29 132.1 185 49.2
Haze_07225 Corylus avellana HOM05D004927 ORTHO05D005798 5.1e-29 131.7 117 66.7
A09p08260 Brassica napus HOM05D004927 ORTHO05D005798 6.6e-29 131.3 152 53.9
C09p09350 Brassica napus HOM05D000789 ORTHO05D005798 6.6e-29 131.3 156 53.2
BolC9t53847H Brassica oleracea HOM05D000789 ORTHO05D005798 6.6e-29 131.3 156 53.2
Gorai.006G271700 Gossypium raimondii HOM05D004927 ORTHO05D005798 6.6e-29 131.3 162 50.6
Psat0s2546g0040 Pisum sativum HOM05D004927 ORTHO05D005798 6.6e-29 131.3 155 52.9
BcaB04g19918 Brassica carinata HOM05D004927 ORTHO05D005798 8.7e-29 131.0 153 54.2
SGA_v2.0_scaffold215G42324 Striga asiatica HOM05D004927 ORTHO05D005798 1.5e-28 130.2 159 52.2
VMungo1215G0874 Vigna mungo HOM05D004927 ORTHO05D005798 1.5e-28 130.2 135 58.5
Gohir.A09G247250 Gossypium hirsutum HOM05D004927 ORTHO05D005798 5.6e-28 128.3 156 54.5
CDE02G1054 Ceratophyllum demersum HOM05D004927 ORTHO05D005798 7.3e-28 127.9 145 55.2
Migut.D01264 Erythranthe guttata HOM05D004927 ORTHO05D005798 1.3e-27 127.1 158 53.8
HPP92_001413 Vanilla planifolia HOM05D004927 ORTHO05D005798 2.8e-27 125.9 148 55.4
unitig_61.g26197 Utricularia gibba HOM05D004927 ORTHO05D005798 3.6e-27 125.6 176 47.2
PSO017G7268 Papaver somniferum HOM05D004927 ORTHO05D005798 1.4e-26 123.6 182 47.8
Sc04g0000700 Simmondsia chinensis HOM05D004927 ORTHO05D005798 1.8e-26 123.2 163 49.7
PSO063G5502 Papaver somniferum HOM05D004927 ORTHO05D005798 2.4e-26 122.9 160 50.6
TPR.G19215 Trifolium pratense HOM05D004927 ORTHO05D005798 4.0e-26 122.1 151 49.7
arahy.Tifrunner.gnm1.ann1.9DG48R Arachis hypogaea HOM05D004927 ORTHO05D005798 6.9e-26 121.3 134 57.5
arahy.Tifrunner.gnm1.ann1.PKYK26 Arachis hypogaea HOM05D004927 ORTHO05D005798 6.9e-26 121.3 134 57.5
QL10p003733 Quercus lobata HOM05D004927 ORTHO05D005798 6.9e-26 121.3 127 57.5
Gorai.004G275800 Gossypium raimondii HOM05D004927 ORTHO05D005798 9.0e-26 120.9 162 48.1
BraA09t36477Z Brassica rapa HOM05D004927 ORTHO05D005798 1.2e-25 120.6 165 49.1
DCAR_026226 Daucus carota HOM05D004927 ORTHO05D005798 2.0e-25 119.8 153 52.9
PSO478G0696 Papaver somniferum HOM05D004927 ORTHO05D005798 2.6e-25 119.4 182 48.4
Aqoxy3G01521 Aquilegia oxysepala HOM05D004927 ORTHO05D005798 4.5e-25 118.6 158 50.0
EL10As4g23391 Beta vulgaris HOM05D004927 ORTHO05D005798 4.9e-24 115.2 145 52.4
TAR622G0157 Trochodendron aralioides HOM05D004927 ORTHO05D005798 6.4e-24 114.8 156 50.6
Gohir.D08G258600 Gossypium hirsutum HOM05D004927 ORTHO05D005798 2.4e-23 112.8 152 49.3
SalBow1G5982 Salvia bowleyana HOM05D004927 ORTHO05D005798 4.2e-23 112.1 135 52.6
PGSC0003DMG400015243 Solanum tuberosum HOM05D004927 ORTHO05D005798 7.1e-23 111.3 172 46.5
vmacro16676 Vaccinium macrocarpon HOM05D004927 ORTHO05D005798 7.1e-23 111.3 114 62.3
Zm00001eb169640 Zea mays HOM05D004927 ORTHO05D005798 2.7e-22 109.4 165 47.9
Os11g0483600 Oryza sativa ssp. japonica HOM05D004927 ORTHO05D005798 7.9e-22 107.8 159 46.5
PSO782G2667 Papaver somniferum HOM05D004927 ORTHO05D005798 1.3e-21 107.1 147 48.3
AagrBONN_evm.TU.Sc2ySwM_344.432 Anthoceros agrestis HOM05D004927 ORTHO05D005798 2.3e-21 106.3 145 44.1
Lj9A478G96 Lonicera japonica HOM05D004927 ORTHO05D005798 3.9e-21 105.5 148 50.7
SGA_v2.0_scaffold161G37795 Striga asiatica HOM05D004927 ORTHO05D005798 3.9e-21 105.5 201 41.3
Lsat_1_v5_gn_4_80380 Lactuca sativa HOM05D004927 ORTHO05D005798 6.7e-21 104.8 158 46.8
Nitab4.5_0016919g0010 Nicotiana tabacum HOM05D004927 ORTHO05D005798 6.7e-21 104.8 116 56.0
Os12g0442900 Oryza sativa ssp. japonica HOM05D004927 ORTHO05D005798 9.6e-20 100.9 162 44.4
ClCG06G017840 Citrullus lanatus HOM05D004927 ORTHO05D005798 4.8e-19 98.6 98 57.1
SalBow1G7483 Salvia bowleyana HOM05D004927 ORTHO05D005798 8.1e-19 97.8 172 43.6
Eucgr.B00112 Eucalyptus grandis HOM05D004927 ORTHO05D005798 1.8e-18 96.7 114 53.5
BolC2t12346H Brassica oleracea HOM05D001512 ORTHO05D001574 5.3e-18 95.1 112 51.8
CDE05G1557 Ceratophyllum demersum HOM05D004927 ORTHO05D005798 9.0e-18 94.4 109 54.1
C02p62750 Brassica napus HOM05D001512 ORTHO05D001574 2.6e-17 92.8 112 50.9
COL.COLO4_28098 Corchorus olitorius HOM05D004927 ORTHO05D005798 3.4e-17 92.4 95 63.2
Gohir.A09G246700 Gossypium hirsutum HOM05D004927 ORTHO05D005798 1.3e-16 90.5 98 56.1
CBR_g27958 Chara braunii HOM05D004927 ORTHO05D005798 2.2e-16 89.7 159 40.3
Pp3c8_10310 Physcomitrium patens HOM05D004927 ORTHO05D005798 1.4e-15 87.0 154 40.3
BcaC03g18207 Brassica carinata HOM05D004927 ORTHO05D005798 7.1e-15 84.7 147 41.5
Migut.I00501 Erythranthe guttata HOM05D004927 ORTHO05D005798 1.6e-14 83.6 96 53.1
CAN.G352.25 Capsicum annuum HOM05D004927 ORTHO05D005798 2.7e-14 82.8 74 63.5
Cfa018832 Carpinus fangiana HOM05D004927 ORTHO05D005798 2.7e-14 82.8 86 61.6
CBR_g36334 Chara braunii HOM05D004927 ORTHO05D005798 1.8e-13 80.1 167 36.5
HPP92_001420 Vanilla planifolia HOM05D004927 ORTHO05D005798 5.1e-13 78.6 98 48.0
ATR0561G036 Amborella trichopoda HOM05D004927 ORTHO05D005798 6.7e-13 78.2 117 44.4
Hma1.2p1_2767F.1_g328170 Hydrangea macrophylla HOM05D004927 ORTHO05D005798 9.6e-12 74.3 85 61.2
Lsat_1_v5_gn_5_95420 Lactuca sativa HOM05D004927 ORTHO05D005798 5.3e-10 68.6 73 53.4
Mapoly0121s0035 Marchantia polymorpha HOM05D004927 ORTHO05D005798 6.9e-10 68.2 100 45.0
SMO334G0034 Selaginella moellendorffii HOM05D004927 ORTHO05D005798 6.9e-10 68.2 143 37.8
Cpa.g.sc13.128 Carica papaya HOM05D004927 ORTHO05D005798 1.0e-08 64.3 59 67.8
Gohir.D09G248000 Gossypium hirsutum HOM05D004927 ORTHO05D005798 2.2e-08 63.2 75 52.0
BraA02t09201Z Brassica rapa HOM05D004927 ORTHO05D005798 2.9e-08 62.8 91 48.4
Gohir.D01G081600 Gossypium hirsutum HOM05D004927 ORTHO05D005798 8.4e-08 61.2 58 62.1
Gorai.007G057300 Gossypium raimondii HOM05D004927 ORTHO05D005798 8.4e-08 61.2 58 62.1
Gohir.D07G062100 Gossypium hirsutum HOM05D004927 ORTHO05D005798 2.5e-07 59.7 58 60.3
AUR62029623 Chenopodium quinoa HOM05D004927 ORTHO05D005798 3.2e-07 59.3 58 63.8
Gohir.D11G291800 Gossypium hirsutum HOM05D004927 ORTHO05D005798 3.2e-07 59.3 56 62.5
Oeu037712.1 Olea europaea HOM05D004927 ORTHO05D005798 5.5e-07 58.5 56 57.1
ECA232G0032 Erigeron canadensis HOM05D004927 ORTHO05D005798 7.9e-06 54.7 97 41.2
Gohir.D09G247201 Gossypium hirsutum HOM05D004927 ORTHO05D005798 7.9e-06 54.7 61 54.1
SEGI_01314 Sequoiadendron giganteum HOM05D004927 ORTHO05D005798 7.9e-06 54.7 45 62.2


User provided reference genes

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