Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_5g07960 Fragaria vesca HOM05D005072 ORTHO05D006209 0.0e+00 1141.3 599 100.0
FAN18G1184 Fragaria x ananassa HOM05D005072 ORTHO05D006209 0.0e+00 1136.7 599 98.3
FAN13G0840 Fragaria x ananassa HOM05D005072 ORTHO05D006209 0.0e+00 1088.2 599 95.3
FAN04G1678 Fragaria x ananassa HOM05D005072 ORTHO05D006209 0.0e+00 1083.6 599 94.8
FAN08G0571 Fragaria x ananassa HOM05D005072 ORTHO05D006209 0.0e+00 1081.6 599 94.8
RcHm_v2.0_Chr7g0190441 Rosa chinensis HOM05D005072 ORTHO05D006209 2.3e-297 1025.0 599 86.6
Prupe.4G269200 Prunus persica HOM05D005072 ORTHO05D006209 3.0e-257 891.7 603 75.0
MD03G1163400 Malus domestica HOM05D005072 ORTHO05D006209 1.6e-250 869.4 600 74.7
Dinv24604 Davidia involucrata HOM05D005072 ORTHO05D006209 7.8e-237 823.9 596 70.8
Hma1.2p1_1843F.1_g305080 Hydrangea macrophylla HOM05D005072 ORTHO05D006209 2.5e-235 818.9 588 69.7
Ciclev10014694m.g Citrus clementina HOM05D005072 ORTHO05D006209 1.1e-233 813.5 591 69.7
Cfa010164 Carpinus fangiana HOM05D005072 ORTHO05D006209 1.5e-232 809.7 595 69.7
TWI79G0414 Tripterygium wilfordii HOM05D005072 ORTHO05D006209 3.4e-232 808.5 601 68.6
TAR623G1264 Trochodendron aralioides HOM05D005072 ORTHO05D006209 8.6e-228 793.9 603 68.3
Thecc.09G251600 Theobroma cacao HOM05D005072 ORTHO05D006209 3.1e-225 785.4 596 66.4
Atru.chr3.2833 Acer truncatum HOM05D005072 ORTHO05D006209 1.4e-222 776.5 600 66.5
Haze_23549 Corylus avellana HOM05D005072 ORTHO05D006209 2.7e-221 772.3 620 65.6
COL.COLO4_33262 Corchorus olitorius HOM05D005072 ORTHO05D006209 4.3e-219 765.0 595 64.5
Ca_06178_v3 Cicer arietinum L. HOM05D005072 ORTHO05D006209 2.1e-218 762.7 592 65.4
GSVIVG01037391001 Vitis vinifera HOM05D005072 ORTHO05D006209 2.0e-216 756.1 607 66.4
Gohir.A08G009400 Gossypium hirsutum HOM05D005072 ORTHO05D006209 3.4e-216 755.4 602 64.0
Gohir.D08G019500 Gossypium hirsutum HOM05D005072 ORTHO05D006209 4.4e-216 755.0 602 63.8
Lalb_Chr10g0106071 Lupinus albus HOM05D005072 ORTHO05D006209 4.4e-216 755.0 595 65.4
Duzib170G0952 Durio zibethinus HOM05D005072 ORTHO05D006209 9.9e-216 753.8 596 64.3
Gorai.004G014000 Gossypium raimondii HOM05D005072 ORTHO05D006209 2.2e-215 752.7 602 63.6
Phvul.008G203700 Phaseolus vulgaris HOM05D005072 ORTHO05D006209 2.2e-215 752.7 597 64.0
Cc01_g07180 Coffea canephora HOM05D005072 ORTHO05D006209 3.8e-215 751.9 606 66.3
Glyma.02G277200 Glycine max HOM05D005072 ORTHO05D006209 2.1e-213 746.1 595 64.2
TPR.G16394 Trifolium pratense HOM05D005072 ORTHO05D006209 4.6e-213 745.0 592 64.0
SGA_v2.0_scaffold16G07591 Striga asiatica HOM05D005072 ORTHO05D006209 1.3e-212 743.4 606 63.5
Glyma.14G038000 Glycine max HOM05D005072 ORTHO05D006209 3.0e-212 742.3 597 63.8
Potri.009G022200 Populus trichocarpa HOM05D005072 ORTHO05D006209 1.9e-211 739.6 598 64.0
CiPaw.14G108700 Carya illinoinensis HOM05D005072 ORTHO05D006209 2.5e-211 739.2 514 71.6
Medtr5g088780 Medicago truncatula HOM05D005072 ORTHO05D006209 5.6e-211 738.0 590 63.6
CANSAT54G0197 Cannabis sativa HOM05D005072 ORTHO05D006209 9.6e-211 737.3 601 64.7
Manes.02G135100 Manihot esculenta HOM05D005072 ORTHO05D006209 4.8e-210 734.9 518 70.8
Aqoxy2G00052 Aquilegia oxysepala HOM05D005072 ORTHO05D006209 8.1e-210 734.2 588 63.9
Cpa.g.sc34.205 Carica papaya HOM05D005072 ORTHO05D006209 3.1e-209 732.3 587 64.2
Psat0s680g0080 Pisum sativum HOM05D005072 ORTHO05D006209 4.0e-209 731.9 592 62.3
Migut.N02404 Erythranthe guttata HOM05D005072 ORTHO05D006209 1.2e-208 730.3 607 63.9
vmacro14280 Vaccinium macrocarpon HOM05D005072 ORTHO05D006209 1.2e-208 730.3 596 63.8
HanXRQChr05g0144311 Helianthus annuus HOM05D005072 ORTHO05D006209 4.5e-208 728.4 586 64.0
Oeu032059.1 Olea europaea HOM05D005072 ORTHO05D006209 2.9e-207 725.7 598 62.9
PGR102G1516 Punica granatum HOM05D005072 ORTHO05D006209 1.1e-206 723.8 595 62.2
PSO675G4775 Papaver somniferum HOM05D005072 ORTHO05D006209 9.3e-206 720.7 611 61.5
QL01p016041 Quercus lobata HOM05D005072 ORTHO05D006209 1.1e-203 713.8 789 51.2
arahy.Tifrunner.gnm1.ann1.BCWF2K Arachis hypogaea HOM05D005072 ORTHO05D006209 1.5e-203 713.4 581 61.8
Lj1C290G6 Lonicera japonica HOM05D005072 ORTHO05D006209 1.9e-203 713.0 590 63.2
Eucgr.B03761 Eucalyptus grandis HOM05D005072 ORTHO05D006209 5.6e-203 711.4 595 61.5
PSO541G4749 Papaver somniferum HOM05D005072 ORTHO05D006209 5.6e-203 711.4 611 60.2
ClCG02G022550 Citrullus lanatus HOM05D005072 ORTHO05D006209 1.3e-202 710.3 609 61.6
LjContig00564g0010958 Lotus japonicus HOM05D005072 ORTHO05D006209 1.3e-202 710.3 592 62.8
THA.LOC104799144 Tarenaya hassleriana HOM05D005072 ORTHO05D006209 2.8e-202 709.1 605 59.3
Sopen01g004520 Solanum pennellii HOM05D005072 ORTHO05D006209 6.2e-202 708.0 598 62.2
CAN.G651.4 Capsicum annuum HOM05D005072 ORTHO05D006209 1.1e-201 707.2 591 62.1
ECA238G1118 Erigeron canadensis HOM05D005072 ORTHO05D006209 2.4e-201 706.1 532 66.4
DCAR_023860 Daucus carota HOM05D005072 ORTHO05D006209 9.0e-201 704.1 516 66.9
C02p05680 Brassica napus HOM05D005072 ORTHO05D006209 2.0e-200 703.0 597 59.1
Nitab4.5_0002300g0060 Nicotiana tabacum HOM05D005072 ORTHO05D006209 2.0e-200 703.0 609 61.4
Solyc01g009030.4 Solanum lycopersicum HOM05D005072 ORTHO05D006209 2.0e-200 703.0 602 61.6
CsaV3_6G038680 Cucumis sativus L. HOM05D005072 ORTHO05D006209 2.6e-200 702.6 600 61.7
A02p01460 Brassica napus HOM05D005072 ORTHO05D006209 3.4e-200 702.2 597 59.1
CARHR200820 Cardamine hirsuta HOM05D005072 ORTHO05D006209 1.0e-199 700.7 599 58.6
MELO3C014531.2 Cucumis melo HOM05D005072 ORTHO05D006209 1.1e-198 697.2 600 61.0
arahy.Tifrunner.gnm1.ann1.2SU3A5 Arachis hypogaea HOM05D005072 ORTHO05D006209 1.9e-198 696.4 613 58.6
BolC2t06512H Brassica oleracea HOM05D005072 ORTHO05D006209 1.9e-198 696.4 605 58.3
BraA02t05125Z Brassica rapa HOM05D005072 ORTHO05D006209 5.5e-198 694.9 605 58.3
Sp6g31350 Schrenkiella parvula HOM05D005072 ORTHO05D006209 9.3e-198 694.1 598 58.5
Thhalv10013024m.g Eutrema salsugineum HOM05D005072 ORTHO05D006209 3.5e-197 692.2 597 58.3
AL6G23090 Arabidopsis lyrata HOM05D005072 ORTHO05D006209 6.0e-197 691.4 600 58.3
MBI13_g20755_MAGBIO Magnolia biondii HOM05D005072 ORTHO05D006209 7.9e-197 691.0 661 57.0
Aa31LG3G14940 Aethionema arabicum HOM05D005072 ORTHO05D006209 1.8e-196 689.9 610 57.7
MSTRG.12421 Avicennia marina HOM05D005072 ORTHO05D006209 2.3e-196 689.5 608 60.7
Hund21956 Selenicereus undatus HOM05D005072 ORTHO05D006209 3.9e-196 688.7 594 59.9
Lsat_1_v5_gn_2_36161 Lactuca sativa HOM05D005072 ORTHO05D006209 5.7e-195 684.9 523 66.5
Carub.0006s1080 Capsella rubella HOM05D005072 ORTHO05D006209 1.3e-194 683.7 600 57.7
CSS0034993 Camellia sinensis var. sinensis HOM05D005072 ORTHO05D006209 1.8e-193 679.9 590 63.2
Nitab4.5_0000428g0060 Nicotiana tabacum HOM05D005072 ORTHO05D006209 1.8e-193 679.9 589 61.0
A03p05510 Brassica napus HOM05D005072 ORTHO05D006209 2.4e-193 679.5 574 59.1
C03p06430 Brassica napus HOM05D005072 ORTHO05D006209 1.6e-189 666.8 572 58.4
BolC3t13149H Brassica oleracea HOM05D005072 ORTHO05D006209 7.9e-189 664.5 573 58.5
EL10Ac4g10071 Beta vulgaris HOM05D005072 ORTHO05D006209 1.5e-187 660.2 596 57.9
BraA03t09889Z Brassica rapa HOM05D005072 ORTHO05D006209 2.5e-187 659.4 521 61.8
Peaxi162Scf00050g02225 Petunia axillaris HOM05D005072 ORTHO05D006209 1.6e-186 656.8 583 59.3
CSS0024863 Camellia sinensis var. sinensis HOM05D005072 ORTHO05D006209 1.0e-180 637.5 563 61.8
Sed0004908 Sechium edule HOM05D005072 ORTHO05D006209 4.3e-179 632.1 564 59.6
SalBow3G4478 Salvia bowleyana HOM05D005072 ORTHO05D006209 5.0e-175 618.6 624 55.1
AT5G12290 Arabidopsis thaliana HOM05D005072 ORTHO05D006209 2.6e-171 606.3 508 59.8
Ah.04g159570 Amaranthus hybridus HOM05D005072 ORTHO05D006209 4.4e-171 605.5 598 54.5
Sc06g0004780 Simmondsia chinensis HOM05D005072 ORTHO05D006209 2.4e-169 599.7 488 62.3
BcaB01g05412 Brassica carinata HOM05D005072 ORTHO05D006209 8.5e-167 591.3 597 52.9
ATR0307G105 Amborella trichopoda HOM05D005072 ORTHO05D006209 6.5e-159 565.1 469 61.8
AUR62006578 Chenopodium quinoa HOM05D005072 ORTHO05D006209 1.6e-157 560.5 595 51.6
AUR62000232 Chenopodium quinoa HOM05D005072 ORTHO05D006209 3.0e-156 556.2 620 50.8
Actinidia38495 Actinidia chinensis HOM05D005072 ORTHO05D006209 2.0e-152 543.5 356 76.4
Zm00001eb017230 Zea mays HOM05D005072 ORTHO05D006209 5.6e-142 508.8 535 49.9
unitig_27.g25017 Utricularia gibba HOM05D005072 ORTHO05D006209 2.2e-138 496.9 619 46.8
Pp3c22_1870 Physcomitrium patens HOM05D005072 ORTHO05D006209 1.5e-123 447.6 564 45.7
Duzib168G1271 Durio zibethinus HOM05D005072 ORTHO05D006209 4.1e-121 439.5 381 57.2
SMO147G0386 Selaginella moellendorffii HOM05D005072 ORTHO05D006209 7.1e-121 438.7 493 47.1
Mapoly0034s0093 Marchantia polymorpha HOM05D005072 ORTHO05D006209 1.2e-120 438.0 518 45.9
Os03g0377500 Oryza sativa ssp. japonica HOM05D005072 ORTHO05D006209 2.2e-114 417.2 445 50.1
HPP92_015601 Vanilla planifolia HOM05D005072 ORTHO05D006209 7.1e-113 412.1 300 68.7
Lj1C297T8 Lonicera japonica HOM05D005072 ORTHO05D006209 1.5e-110 404.4 332 61.4
Pp3c3_6740 Physcomitrium patens HOM05D005072 ORTHO05D006209 3.6e-109 399.8 544 42.3
Nn7g36972 Nelumbo nucifera HOM05D005072 ORTHO05D006209 5.1e-87 326.2 414 47.8
Glyma.14G037400 Glycine max HOM05D005072 ORTHO05D006209 3.1e-84 317.0 216 75.0
CDE07G0611 Ceratophyllum demersum HOM05D005072 ORTHO05D006209 9.0e-84 315.5 216 75.9
Actinidia29952 Actinidia chinensis HOM05D005072 ORTHO05D006209 6.0e-80 302.8 277 56.3
CBR_g51661 Chara braunii HOM05D005072 ORTHO05D006209 1.4e-73 281.6 593 32.9
AagrBONN_evm.TU.Sc2ySwM_117.924 Anthoceros agrestis HOM05D005072 ORTHO05D006209 4.6e-72 276.6 374 38.8
Aqoxy279s001 Aquilegia oxysepala HOM05D005072 ORTHO05D006209 1.9e-70 271.2 282 50.4
PGSC0003DMG403022702 Solanum tuberosum HOM05D005072 ORTHO05D006209 2.0e-67 261.2 180 75.6
Os03g0377300 Oryza sativa ssp. japonica HOM05D005072 ORTHO05D006209 4.3e-62 243.4 347 39.8
Actinidia27132 Actinidia chinensis HOM05D005072 ORTHO05D006209 4.0e-47 193.7 162 61.1
SEGI_25760 Sequoiadendron giganteum HOM05D005072 ORTHO05D006209 1.1e-41 175.6 123 65.0
Lj1A297G59 Lonicera japonica HOM05D005072 ORTHO05D006209 3.4e-38 164.1 112 71.4
SEGI_30846 Sequoiadendron giganteum HOM05D005072 ORTHO05D006209 1.8e-36 158.3 115 72.2
ECA233G6112 Erigeron canadensis HOM05D005072 ORTHO05D006209 1.6e-35 155.2 270 40.0
Hma1.2p1_2592F.1_g325060 Hydrangea macrophylla HOM05D005072 ORTHO05D006209 1.7e-29 135.2 103 65.0
Hma1.2p1_2592F.1_g325070 Hydrangea macrophylla HOM05D005072 ORTHO05D006209 4.9e-29 133.7 112 58.9
Cre14.g610351 Chlamydomonas reinhardtii HOM05D005072 ORTHO05D006209 2.8e-24 117.9 371 27.2
MCO07G292 Micromonas commoda HOM05D005072 ORTHO05D006209 1.4e-23 115.5 569 24.1
AL340U10010 Arabidopsis lyrata HOM05D005072 ORTHO05D006209 1.2e-22 112.5 98 51.0
Lsat_1_v5_gn_5_119240 Lactuca sativa HOM05D005072 ORTHO05D006209 7.5e-22 109.8 130 46.2
Lsat_1_v5_gn_4_59101 Lactuca sativa HOM05D005072 ORTHO05D006209 3.7e-21 107.5 99 50.5
SEGI_31829 Sequoiadendron giganteum HOM05D005072 ORTHO05D006209 1.1e-20 105.9 105 50.5
Os03g0356470 Oryza sativa ssp. japonica HOM05D005072 ORTHO05D006209 3.2e-20 104.4 152 35.5
VMungo1127G1498 Vigna mungo HOM05D005072 ORTHO05D006209 5.4e-20 103.6 80 57.5
VMungo1215G1729 Vigna mungo HOM05D005072 ORTHO05D006209 9.2e-20 102.8 80 57.5
VMungo1245G0001 Vigna mungo HOM05D005072 ORTHO05D006209 4.6e-19 100.5 83 54.2
Nn001s41348 Nelumbo nucifera HOM05D005072 ORTHO05D006209 7.8e-19 99.8 74 67.6
ECA248G3958 Erigeron canadensis HOM05D005072 ORTHO05D006209 5.2e-15 87.0 123 42.3
Cfa026272 Carpinus fangiana HOM05D005072 ORTHO05D126095 1.1e-12 79.3 335 25.4
arahy.Tifrunner.gnm1.ann1.N4LM1Q Arachis hypogaea HOM05D005072 ORTHO05D007788 1.4e-12 79.0 58 69.0
arahy.Tifrunner.gnm1.ann1.ELE64U Arachis hypogaea HOM05D005072 ORTHO05D006209 7.0e-12 76.6 86 43.0
Lsat_1_v5_gn_8_119321 Lactuca sativa HOM05D005072 ORTHO05D006209 3.0e-10 71.2 60 55.0
SMO025G0001 Selaginella moellendorffii HOM05D012532 ORTHO05D006209 1.1e-09 69.3 138 34.8
ECA233G4564 Erigeron canadensis HOM05D005072 ORTHO05D189103 1.2e-08 65.9 470 23.6
Oeu032057.1 Olea europaea HOM05D005072 ORTHO05D006209 1.2e-08 65.9 178 35.4
Lsat_1_v5_gn_4_56401 Lactuca sativa HOM05D005072 ORTHO05D006209 2.1e-08 65.1 54 53.7
Glyma.09G128251 Glycine max HOM05D005072 ORTHO05D006209 3.1e-07 61.2 95 38.9


User provided reference genes

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