Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_5g07950 Fragaria vesca HOM05D005613 ORTHO05D006903 2.6e-169 598.6 289 100.0
RcHm_v2.0_Chr7g0190451 Rosa chinensis HOM05D005613 ORTHO05D006903 2.0e-161 572.4 287 96.2
FAN18G4059 Fragaria x ananassa HOM05D005613 ORTHO05D006903 2.3e-154 548.9 330 84.5
FAN13G2894 Fragaria x ananassa HOM05D005613 ORTHO05D006903 5.2e-154 547.7 286 93.7
MD14G1159000 Malus domestica HOM05D005613 ORTHO05D006903 2.6e-145 518.8 285 87.7
FAN08G1682 Fragaria x ananassa HOM05D005613 ORTHO05D006903 4.9e-144 514.6 314 83.4
MD06G1143700 Malus domestica HOM05D005613 ORTHO05D006903 3.2e-143 511.9 285 86.3
CSS0000406 Camellia sinensis var. sinensis HOM05D005613 ORTHO05D006903 2.1e-142 509.2 283 83.7
Dinv11157 Davidia involucrata HOM05D005613 ORTHO05D006903 2.1e-142 509.2 287 82.2
GSVIVG01008514001 Vitis vinifera HOM05D005613 ORTHO05D006903 3.0e-141 505.4 285 83.9
Eucgr.K02737 Eucalyptus grandis HOM05D005613 ORTHO05D006903 1.5e-140 503.1 276 85.9
TWI23G0755 Tripterygium wilfordii HOM05D005613 ORTHO05D006903 5.6e-140 501.1 285 82.1
Thecc.03G126700 Theobroma cacao HOM05D005613 ORTHO05D006903 7.3e-140 500.7 286 82.2
Prupe.5G152900 Prunus persica HOM05D005613 ORTHO05D006903 1.6e-139 499.6 278 86.0
Potri.015G093500 Populus trichocarpa HOM05D005613 ORTHO05D006903 2.1e-139 499.2 290 81.0
Actinidia15836 Actinidia chinensis HOM05D005613 ORTHO05D006903 2.8e-139 498.8 286 81.5
MSTRG.17588 Avicennia marina HOM05D005613 ORTHO05D006903 3.6e-139 498.4 285 81.1
PGR044G0561 Punica granatum HOM05D005613 ORTHO05D006903 8.1e-139 497.3 283 82.7
Ciclev10021465m.g Citrus clementina HOM05D005613 ORTHO05D006903 2.3e-138 495.7 279 82.4
PSO017G3077 Papaver somniferum HOM05D005613 ORTHO05D006903 2.3e-138 495.7 284 81.3
THA.LOC104803145 Tarenaya hassleriana HOM05D005613 ORTHO05D006903 3.1e-138 495.4 284 80.3
PSO017G2706 Papaver somniferum HOM05D005613 ORTHO05D006903 5.2e-138 494.6 288 80.6
CANSAT80G2472 Cannabis sativa HOM05D005613 ORTHO05D006903 1.2e-137 493.4 287 80.1
Manes.06G118100 Manihot esculenta HOM05D005613 ORTHO05D006903 1.2e-137 493.4 285 82.1
PSO478G0845 Papaver somniferum HOM05D005613 ORTHO05D006903 1.5e-137 493.0 286 80.8
CAN.G767.35 Capsicum annuum HOM05D005613 ORTHO05D006903 4.4e-137 491.5 280 79.6
QL10p004130 Quercus lobata HOM05D005613 ORTHO05D006903 7.5e-137 490.7 291 80.4
TWI39G1237 Tripterygium wilfordii HOM05D005613 ORTHO05D006903 7.5e-137 490.7 285 80.0
PSO675G0985 Papaver somniferum HOM05D005613 ORTHO05D006903 9.9e-137 490.3 284 80.3
QL10p004191 Quercus lobata HOM05D005613 ORTHO05D006903 1.3e-136 490.0 291 80.4
TAR371G0420 Trochodendron aralioides HOM05D005613 ORTHO05D006903 1.7e-136 489.6 285 80.0
Manes.14G052800 Manihot esculenta HOM05D005613 ORTHO05D006903 2.2e-136 489.2 285 81.8
Duzib205G1234 Durio zibethinus HOM05D005613 ORTHO05D006903 2.9e-136 488.8 284 82.0
Solyc12g098640.3 Solanum lycopersicum HOM05D005613 ORTHO05D006903 2.9e-136 488.8 282 79.8
Phvul.009G167500 Phaseolus vulgaris HOM05D005613 ORTHO05D006903 4.9e-136 488.0 279 83.2
Gohir.D07G056300 Gossypium hirsutum HOM05D005613 ORTHO05D006903 8.3e-136 487.3 284 82.7
Gorai.001G059700 Gossypium raimondii HOM05D005613 ORTHO05D006903 8.3e-136 487.3 284 82.7
SalBow7G2516 Salvia bowleyana HOM05D005613 ORTHO05D006903 1.1e-135 486.9 289 80.3
Glyma.04G194500 Glycine max HOM05D005613 ORTHO05D006903 1.4e-135 486.5 277 83.0
Lj1g0013310 Lotus japonicus HOM05D005613 ORTHO05D006903 1.4e-135 486.5 279 82.4
Sopen12g033400 Solanum pennellii HOM05D005613 ORTHO05D006903 1.9e-135 486.1 282 79.4
CARHR258110 Cardamine hirsuta HOM05D005613 ORTHO05D006903 2.4e-135 485.7 276 81.5
Migut.N02308 Erythranthe guttata HOM05D005613 ORTHO05D006903 2.4e-135 485.7 283 79.9
CiPaw.11G009100 Carya illinoinensis HOM05D005613 ORTHO05D006903 3.2e-135 485.3 288 80.9
Glyma.06G171500 Glycine max HOM05D005613 ORTHO05D006903 3.2e-135 485.3 279 82.8
Gohir.A07G051800 Gossypium hirsutum HOM05D005613 ORTHO05D006903 5.4e-135 484.6 284 82.0
PGSC0003DMG400004674 Solanum tuberosum HOM05D005613 ORTHO05D006903 5.4e-135 484.6 276 79.7
AT5G50375 Arabidopsis thaliana HOM05D005613 ORTHO05D006903 3.5e-134 481.9 275 81.1
Nitab4.5_0007541g0020 Nicotiana tabacum HOM05D005613 ORTHO05D006903 4.6e-134 481.5 282 78.0
AL8G24500 Arabidopsis lyrata HOM05D005613 ORTHO05D006903 7.8e-134 480.7 276 80.4
Aa31LG3G6910 Aethionema arabicum HOM05D005613 ORTHO05D006903 3.0e-133 478.8 276 81.2
Nitab4.5_0011040g0030 Nicotiana tabacum HOM05D005613 ORTHO05D006903 3.0e-133 478.8 282 77.7
AUR62032039 Chenopodium quinoa HOM05D005613 ORTHO05D006903 1.1e-132 476.9 288 77.8
Aqoxy5G04126 Aquilegia oxysepala HOM05D005613 ORTHO05D006903 1.5e-132 476.5 277 79.8
Psat5g169720 Pisum sativum HOM05D005613 ORTHO05D006903 1.5e-132 476.5 279 81.0
EL10Ac5g11023 Beta vulgaris HOM05D005613 ORTHO05D006903 3.3e-132 475.3 282 78.4
Carub.0008s1047 Capsella rubella HOM05D005613 ORTHO05D006903 3.3e-132 475.3 275 79.6
Haze_07235 Corylus avellana HOM05D005613 ORTHO05D006903 3.3e-132 475.3 318 73.3
Medtr3g089010 Medicago truncatula HOM05D005613 ORTHO05D006903 3.3e-132 475.3 285 78.6
Hund02427 Selenicereus undatus HOM05D005613 ORTHO05D006903 3.3e-132 475.3 289 76.5
Peaxi162Scf00378g00519 Petunia axillaris HOM05D005613 ORTHO05D006903 5.6e-132 474.6 282 78.4
HanXRQChr09g0273061 Helianthus annuus HOM05D005613 ORTHO05D006903 1.2e-131 473.4 281 78.6
SpUn0050_0040 Schrenkiella parvula HOM05D005613 ORTHO05D006903 1.6e-131 473.0 276 79.7
ECA232G4063 Erigeron canadensis HOM05D005613 ORTHO05D006903 2.8e-131 472.2 284 77.1
Lalb_Chr11g0069651 Lupinus albus HOM05D005613 ORTHO05D006903 2.8e-131 472.2 288 78.8
MELO3C002354.2 Cucumis melo HOM05D005613 ORTHO05D006903 4.7e-131 471.5 286 78.0
Thhalv10014300m.g Eutrema salsugineum HOM05D005613 ORTHO05D006903 8.1e-131 470.7 273 79.9
Actinidia25589 Actinidia chinensis HOM05D005613 ORTHO05D006903 1.1e-130 470.3 259 84.2
CsaV3_1G009570 Cucumis sativus L. HOM05D005613 ORTHO05D006903 1.1e-130 470.3 286 78.0
BcaB01g02892 Brassica carinata HOM05D005613 ORTHO05D006903 1.8e-130 469.5 275 79.6
BcaC01g04807 Brassica carinata HOM05D005613 ORTHO05D006903 2.4e-130 469.2 275 79.6
Lj9C477T8 Lonicera japonica HOM05D005613 ORTHO05D006903 2.4e-130 469.2 287 79.4
Cc07_g17610 Coffea canephora HOM05D005613 ORTHO05D006903 3.1e-130 468.8 273 79.5
VMungo1309G0937 Vigna mungo HOM05D005613 ORTHO05D006903 4.0e-130 468.4 266 84.2
Sed0021273 Sechium edule HOM05D005613 ORTHO05D006903 6.8e-130 467.6 273 80.6
TPR.G26132 Trifolium pratense HOM05D005613 ORTHO05D006903 1.5e-129 466.5 305 74.1
Lsat_1_v5_gn_4_76740 Lactuca sativa HOM05D005613 ORTHO05D006903 2.0e-129 466.1 288 77.4
C03p33570 Brassica napus HOM05D005613 ORTHO05D006903 3.4e-129 465.3 277 79.4
BolC3t15677H Brassica oleracea HOM05D005613 ORTHO05D006903 1.7e-128 463.0 283 77.7
Cc00_g03610 Coffea canephora HOM05D005613 ORTHO05D006903 2.2e-128 462.6 275 78.5
A03p27830 Brassica napus HOM05D005613 ORTHO05D006903 2.9e-128 462.2 282 77.7
BraA03t11994Z Brassica rapa HOM05D005613 ORTHO05D006903 6.4e-128 461.1 288 76.0
arahy.Tifrunner.gnm1.ann1.91S2FI Arachis hypogaea HOM05D005613 ORTHO05D006903 1.2e-126 456.8 300 75.3
ClCG03G003690 Citrullus lanatus HOM05D005613 ORTHO05D006903 3.5e-126 455.3 320 69.7
Sed0001462 Sechium edule HOM05D005613 ORTHO05D006903 4.6e-126 454.9 276 78.3
A09p55960 Brassica napus HOM05D005613 ORTHO05D006903 2.3e-125 452.6 278 76.6
BraA09t40998Z Brassica rapa HOM05D005613 ORTHO05D006903 2.3e-125 452.6 278 76.6
DCAR_016405 Daucus carota HOM05D005613 ORTHO05D006903 1.5e-124 449.9 284 75.4
Rhsim08G0188600 Rhododendron simsii HOM05D005613 ORTHO05D006903 2.5e-124 449.1 285 77.9
BolC8t51467H Brassica oleracea HOM05D005613 ORTHO05D006903 2.8e-123 445.7 276 75.7
CDE02G3999 Ceratophyllum demersum HOM05D005613 ORTHO05D006903 2.8e-123 445.7 279 75.3
BcaB08g35134 Brassica carinata HOM05D005613 ORTHO05D006903 4.7e-123 444.9 276 75.0
C08p38940 Brassica napus HOM05D005613 ORTHO05D006903 8.1e-123 444.1 276 75.4
unitig_27.g24986 Utricularia gibba HOM05D005613 ORTHO05D006903 1.4e-122 443.4 282 73.8
Sabra15G0115100 Salix brachista HOM05D005613 ORTHO05D006903 1.8e-122 443.0 304 71.7
arahy.Tifrunner.gnm1.ann1.AY81KB Arachis hypogaea HOM05D005613 ORTHO05D006903 3.1e-122 442.2 279 77.4
Zm00001eb265520 Zea mays HOM05D005613 ORTHO05D006903 3.4e-121 438.7 271 75.6
DCAR_021614 Daucus carota HOM05D005613 ORTHO05D006903 2.9e-120 435.6 280 72.5
Dinv04871 Davidia involucrata HOM05D005613 ORTHO05D006903 8.4e-120 434.1 287 74.6
SEGI_09495 Sequoiadendron giganteum HOM05D005613 ORTHO05D006903 2.3e-117 426.0 281 70.8
ATR0680G053 Amborella trichopoda HOM05D005613 ORTHO05D006903 5.6e-116 421.4 273 71.4
BcaC07g40897 Brassica carinata HOM05D005613 ORTHO05D006903 2.1e-115 419.5 280 71.4
Nn4g22373 Nelumbo nucifera HOM05D005613 ORTHO05D006903 1.4e-114 416.8 282 71.3
vmacro19214 Vaccinium macrocarpon HOM05D005613 ORTHO05D006903 4.0e-114 415.2 371 59.0
unitig_699.g19129 Utricularia gibba HOM05D005613 ORTHO05D006903 2.4e-111 406.0 271 71.2
arahy.Tifrunner.gnm1.ann1.LN4RIT Arachis hypogaea HOM05D005613 ORTHO05D006903 1.3e-109 400.2 237 80.2
AUR62036512 Chenopodium quinoa HOM05D005613 ORTHO05D006903 6.2e-107 391.3 241 75.5
CDE09G1331 Ceratophyllum demersum HOM05D005613 ORTHO05D006903 1.2e-105 387.1 279 68.1
COL.COLO4_28085 Corchorus olitorius HOM05D005613 ORTHO05D006903 2.6e-105 386.0 221 81.0
Cpa.g.sc13.142 Carica papaya HOM05D005613 ORTHO05D006903 3.5e-102 375.6 227 80.2
BcaB05g24059 Brassica carinata HOM05D005613 ORTHO05D006903 4.6e-102 375.2 294 64.6
Aqoxy22s001 Aquilegia oxysepala HOM05D005613 ORTHO05D006903 6.9e-98 361.3 199 83.9
SpUn0508_0010 Schrenkiella parvula HOM05D005613 ORTHO05D006903 6.9e-98 361.3 210 79.5
CiPaw.12G041000 Carya illinoinensis HOM05D005613 ORTHO05D006903 2.9e-96 355.9 194 85.1
SMO180G0005 Selaginella moellendorffii HOM05D005613 ORTHO05D006903 4.6e-94 348.6 276 58.7
Mapoly0019s0004 Marchantia polymorpha HOM05D005613 ORTHO05D006903 4.3e-92 342.0 281 58.4
Pp3c14_22450 Physcomitrium patens HOM05D005613 ORTHO05D006903 5.9e-89 331.6 272 59.2
SHI39270 Sapria himalayana HOM05D005613 ORTHO05D006903 2.1e-86 323.2 189 79.4
SHI42710 Sapria himalayana HOM05D005613 ORTHO05D006903 2.1e-86 323.2 189 79.4
Aqoxy1G01617 Aquilegia oxysepala HOM05D005613 ORTHO05D006903 3.3e-84 315.8 227 69.2
AUR62032713 Chenopodium quinoa HOM05D005613 ORTHO05D006903 1.7e-80 303.5 229 65.9
AagrBONN_evm.TU.Sc2ySwM_362.2466 Anthoceros agrestis HOM05D005613 ORTHO05D006903 2.6e-76 289.7 226 61.5
SGA_v2.0_scaffold42G16110 Striga asiatica HOM05D005613 ORTHO05D006903 1.0e-72 277.7 308 50.6
Cre16.g657300 Chlamydomonas reinhardtii HOM05D005613 ORTHO05D006903 1.3e-72 277.3 284 50.4
HPP92_006202 Vanilla planifolia HOM05D005613 ORTHO05D006903 1.0e-64 251.1 156 76.3
AagrBONN_evm.TU.Sc2ySwM_117.1130 Anthoceros agrestis HOM05D005613 ORTHO05D006903 1.2e-62 244.2 191 60.7
SGA_v2.0_scaffold115G32075 Striga asiatica HOM05D005613 ORTHO05D006903 1.6e-62 243.8 154 74.0
CBR_g48821 Chara braunii HOM05D005613 ORTHO05D006903 1.2e-57 227.6 210 50.0
Ah.11g044830 Amaranthus hybridus HOM05D006563 ORTHO05D008154 6.5e-56 221.9 131 77.9
SMO353G0009 Selaginella moellendorffii HOM05D005613 ORTHO05D006903 9.4e-55 218.0 262 46.9
SGA_v2.0_scaffold115G32072 Striga asiatica HOM05D000001 ORTHO05D000003 1.4e-45 187.6 237 45.6
HPP92_006201 Vanilla planifolia HOM05D005613 ORTHO05D006903 4.9e-43 179.1 106 76.4
MCO03G530 Micromonas commoda HOM05D005613 ORTHO05D006903 6.4e-35 152.1 211 39.3
PRCOL_00007276 Prasinoderma coloniale HOM05D005613 ORTHO05D006903 1.4e-34 151.0 272 36.0
SGA_v2.0_scaffold3G01513 Striga asiatica HOM05D005613 ORTHO05D006903 6.2e-30 135.6 113 57.5
Os11g0302500 Oryza sativa ssp. japonica HOM05D005613 ORTHO05D006903 5.2e-29 132.5 84 70.2
CBR_g48823 Chara braunii HOM05D005613 ORTHO05D006903 9.6e-15 85.1 67 58.2
SEGI_05867 Sequoiadendron giganteum HOM05D005613 ORTHO05D006903 1.8e-13 80.9 50 76.0
arahy.Tifrunner.gnm1.ann1.W1BQBA Arachis hypogaea HOM05D005613 ORTHO05D006903 2.2e-11 73.9 45 75.6


User provided reference genes

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