Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_5g07380 Fragaria vesca HOM05D006567 ORTHO05D015939 2.7e-126 455.3 222 100.0
FAN18G0654 Fragaria x ananassa HOM05D006567 ORTHO05D009430 2.1e-62 243.0 120 97.5
FvH4_5g19170 Fragaria vesca HOM05D006567 ORTHO05D009430 4.7e-62 241.9 122 95.9
FAN04G0922 Fragaria x ananassa HOM05D006567 ORTHO05D015939 6.1e-62 241.5 140 87.1
FAN08G1209 Fragaria x ananassa HOM05D006567 ORTHO05D009430 6.1e-62 241.5 121 95.9
FAN04G2727 Fragaria x ananassa HOM05D006567 ORTHO05D009430 1.4e-61 240.4 120 95.8
FvH4_3g36620 Fragaria vesca HOM05D006567 ORTHO05D015939 6.8e-61 238.0 129 90.7
FAN27G0484 Fragaria x ananassa HOM05D006567 ORTHO05D015939 2.4e-58 229.6 132 88.6
RcHm_v2.0_Chr7g0203711 Rosa chinensis HOM05D006567 ORTHO05D009430 1.2e-57 227.3 123 87.8
MD04G1062400 Malus domestica HOM05D006567 ORTHO05D009430 1.0e-56 224.2 118 90.7
FAN09G0929 Fragaria x ananassa HOM05D006567 ORTHO05D015939 2.9e-56 222.6 134 85.8
FAN22G0783 Fragaria x ananassa HOM05D006567 ORTHO05D015939 2.9e-56 222.6 134 85.8
Prupe.5G066000 Prunus persica HOM05D006567 ORTHO05D009430 9.5e-55 217.6 118 88.1
QL12p011664 Quercus lobata HOM05D006567 ORTHO05D009430 2.3e-53 213.0 123 82.1
Glyma.05G061300 Glycine max HOM05D006567 ORTHO05D009430 7.5e-52 208.0 117 80.3
Phvul.003G221900 Phaseolus vulgaris HOM05D006567 ORTHO05D009430 7.5e-52 208.0 116 81.0
VMungo0251G1330 Vigna mungo HOM05D006567 ORTHO05D009430 1.3e-51 207.2 116 79.3
QL08p052096 Quercus lobata HOM05D006567 ORTHO05D015939 2.2e-51 206.5 122 79.5
Lalb_Chr05g0221201 Lupinus albus HOM05D006567 ORTHO05D009430 4.9e-51 205.3 113 82.3
Psat4g072680 Pisum sativum HOM05D006567 ORTHO05D009430 6.4e-51 204.9 134 72.4
Lj4g0021343 Lotus japonicus HOM05D006567 ORTHO05D009430 8.3e-51 204.5 126 77.8
COL.COLO4_37145 Corchorus olitorius HOM05D006567 ORTHO05D009430 1.1e-50 204.1 114 81.6
QL08p055973 Quercus lobata HOM05D006567 ORTHO05D015939 1.4e-50 203.8 123 78.9
arahy.Tifrunner.gnm1.ann1.69E4XE Arachis hypogaea HOM05D006567 ORTHO05D009430 2.4e-50 203.0 113 80.5
arahy.Tifrunner.gnm1.ann1.E0WBQ7 Arachis hypogaea HOM05D006567 ORTHO05D009430 2.4e-50 203.0 113 80.5
CANSAT21G0369 Cannabis sativa HOM05D006567 ORTHO05D009430 4.1e-50 202.2 118 78.8
Glyma.17G143100 Glycine max HOM05D006567 ORTHO05D009430 7.0e-50 201.4 118 78.0
Sc07g0009260 Simmondsia chinensis HOM05D006567 ORTHO05D009430 9.2e-50 201.1 114 81.6
TPR.G37608 Trifolium pratense HOM05D006567 ORTHO05D009430 9.2e-50 201.1 121 76.0
Atru.chr9.1289 Acer truncatum HOM05D006567 ORTHO05D009430 1.2e-49 200.7 119 79.0
Cfa015824 Carpinus fangiana HOM05D006567 ORTHO05D009430 1.2e-49 200.7 123 77.2
Sabra03G0048700 Salix brachista HOM05D006567 ORTHO05D009430 1.6e-49 200.3 120 77.5
Medtr4g100760 Medicago truncatula HOM05D006567 ORTHO05D009430 2.0e-49 199.9 119 78.2
SalBow6G6157 Salvia bowleyana HOM05D006567 ORTHO05D009430 2.7e-49 199.5 114 78.9
Ca_21975_v3 Cicer arietinum L. HOM05D006567 ORTHO05D009430 3.5e-49 199.1 113 81.4
Actinidia14413 Actinidia chinensis HOM05D006567 ORTHO05D009430 4.6e-49 198.7 112 81.2
Cpa.g.sc29.179 Carica papaya HOM05D006567 ORTHO05D009430 7.8e-49 198.0 118 77.1
Nn1g00949 Nelumbo nucifera HOM05D006567 ORTHO05D009430 1.0e-48 197.6 127 75.6
MSTRG.12113 Avicennia marina HOM05D006567 ORTHO05D009430 1.7e-48 196.8 117 76.9
Gohir.D12G218600 Gossypium hirsutum HOM05D006567 ORTHO05D009430 2.3e-48 196.4 118 76.3
Cc08_g12240 Coffea canephora HOM05D006567 ORTHO05D009430 3.0e-48 196.1 121 74.4
Hund11604 Selenicereus undatus HOM05D006567 ORTHO05D009430 3.9e-48 195.7 121 72.7
Gorai.008G234200 Gossypium raimondii HOM05D006567 ORTHO05D009430 5.0e-48 195.3 118 75.4
TAR636G1533 Trochodendron aralioides HOM05D006567 ORTHO05D009430 5.0e-48 195.3 113 79.6
Duzib084G0744 Durio zibethinus HOM05D006567 ORTHO05D009430 6.6e-48 194.9 118 74.6
Aqoxy7G00822 Aquilegia oxysepala HOM05D006567 ORTHO05D009430 8.6e-48 194.5 113 79.6
CSS0024870 Camellia sinensis var. sinensis HOM05D006567 ORTHO05D009430 8.6e-48 194.5 128 72.7
Nitab4.5_0001381g0120 Nicotiana tabacum HOM05D006567 ORTHO05D009430 8.6e-48 194.5 113 78.8
CsaV3_5G004320 Cucumis sativus L. HOM05D006567 ORTHO05D009430 1.1e-47 194.1 123 73.2
Potri.003G078500 Populus trichocarpa HOM05D006567 ORTHO05D009430 1.1e-47 194.1 123 75.6
MELO3C005521.2 Cucumis melo HOM05D006567 ORTHO05D009430 1.5e-47 193.7 123 73.2
Thecc.03G249000 Theobroma cacao HOM05D006567 ORTHO05D009430 1.5e-47 193.7 118 76.3
Eucgr.D02095 Eucalyptus grandis HOM05D006567 ORTHO05D009430 1.9e-47 193.4 124 74.2
PGR031G0713 Punica granatum HOM05D006567 ORTHO05D009430 3.3e-47 192.6 119 75.6
Peaxi162Scf00209g00122 Petunia axillaris HOM05D006567 ORTHO05D009430 5.6e-47 191.8 113 78.8
Solyc08g078460.3 Solanum lycopersicum HOM05D006567 ORTHO05D009430 5.6e-47 191.8 113 77.9
PGSC0003DMG400004822 Solanum tuberosum HOM05D006567 ORTHO05D009430 5.6e-47 191.8 113 77.9
vmacro00188 Vaccinium macrocarpon HOM05D006567 ORTHO05D009430 9.5e-47 191.0 113 77.0
HanXRQChr13g0417851 Helianthus annuus HOM05D006567 ORTHO05D009430 1.2e-46 190.7 113 74.3
Sopen08g026950 Solanum pennellii HOM05D006567 ORTHO05D009430 1.2e-46 190.7 113 77.0
TWI81G0123 Tripterygium wilfordii HOM05D006567 ORTHO05D009430 1.2e-46 190.7 121 72.7
Migut.A01121 Erythranthe guttata HOM05D006567 ORTHO05D009430 1.6e-46 190.3 113 77.9
Ciclev10020637m.g Citrus clementina HOM05D006567 ORTHO05D009430 8.0e-46 188.0 118 73.7
Gohir.A12G216000 Gossypium hirsutum HOM05D006567 ORTHO05D009430 8.0e-46 188.0 124 71.8
ECA240G4587 Erigeron canadensis HOM05D006567 ORTHO05D009430 1.0e-45 187.6 113 74.3
Carub.0007s2404 Capsella rubella HOM05D006567 ORTHO05D009430 1.4e-45 187.2 116 74.1
CAN.G1178.26 Capsicum annuum HOM05D006567 ORTHO05D009430 1.4e-45 187.2 113 75.2
Ah.12g054200 Amaranthus hybridus HOM05D006567 ORTHO05D006679 2.3e-45 186.4 122 70.5
SGA_v2.0_scaffold26G11306 Striga asiatica HOM05D006567 ORTHO05D009430 4.0e-45 185.7 112 75.0
Thhalv10025513m.g Eutrema salsugineum HOM05D006567 ORTHO05D009430 5.2e-45 185.3 116 72.4
CARHR223980 Cardamine hirsuta HOM05D006567 ORTHO05D009430 6.8e-45 184.9 116 72.4
ClCG01G004160 Citrullus lanatus HOM05D006567 ORTHO05D009430 1.2e-44 184.1 126 69.8
Sed0022818 Sechium edule HOM05D006567 ORTHO05D009430 1.2e-44 184.1 119 73.9
AL7G37340 Arabidopsis lyrata HOM05D006567 ORTHO05D009430 2.0e-44 183.3 119 71.4
BraA03t14129Z Brassica rapa HOM05D006567 ORTHO05D009430 2.0e-44 183.3 120 70.0
BcaNung03466 Brassica carinata HOM05D006567 ORTHO05D009430 2.6e-44 183.0 119 71.4
A03p50390 Brassica napus HOM05D006567 ORTHO05D009430 3.4e-44 182.6 120 70.8
MBI04_g09522_MAGBIO Magnolia biondii HOM05D006567 ORTHO05D009430 4.4e-44 182.2 129 69.0
Aa31LG1G23140 Aethionema arabicum HOM05D006567 ORTHO05D009430 5.8e-44 181.8 123 69.1
AT4G17370 Arabidopsis thaliana HOM05D006567 ORTHO05D009430 5.8e-44 181.8 112 74.1
Haze_00669 Corylus avellana HOM05D006567 ORTHO05D009430 5.8e-44 181.8 154 61.7
Lsat_1_v5_gn_6_92541 Lactuca sativa HOM05D006567 ORTHO05D009430 9.8e-44 181.0 113 71.7
Sp7g16810 Schrenkiella parvula HOM05D006567 ORTHO05D009430 2.9e-43 179.5 116 70.7
BolC7t45378H Brassica oleracea HOM05D006567 ORTHO05D009430 4.9e-43 178.7 119 69.7
unitig_899.g15594 Utricularia gibba HOM05D006567 ORTHO05D009430 4.9e-43 178.7 120 70.0
EL10Ac5g12369 Beta vulgaris HOM05D006567 ORTHO05D009430 8.3e-43 177.9 116 73.3
EL10Ac5g12374 Beta vulgaris HOM05D006567 ORTHO05D009430 3.2e-42 176.0 108 75.9
DCAR_004966 Daucus carota HOM05D006567 ORTHO05D009430 3.2e-42 176.0 113 69.9
THA.LOC104806666 Tarenaya hassleriana HOM05D006567 ORTHO05D009430 1.6e-41 173.7 119 67.2
PSO170G1323 Papaver somniferum HOM05D006567 ORTHO05D009430 2.7e-41 172.9 126 68.3
AUR62007104 Chenopodium quinoa HOM05D006567 ORTHO05D009430 1.0e-40 171.0 104 74.0
AUR62019967 Chenopodium quinoa HOM05D006567 ORTHO05D009430 1.7e-40 170.2 104 74.0
Nitab4.5_0002289g0070 Nicotiana tabacum HOM05D006567 ORTHO05D009430 1.7e-40 170.2 113 72.6
Rhsim09G0000200 Rhododendron simsii HOM05D006567 ORTHO05D009430 3.0e-40 169.5 154 56.5
PSO017G4082 Papaver somniferum HOM05D006567 ORTHO05D009430 5.0e-40 168.7 126 67.5
SEGI_34288 Sequoiadendron giganteum HOM05D006567 ORTHO05D009430 3.6e-38 162.5 112 64.3
ATR0057G105 Amborella trichopoda HOM05D006567 ORTHO05D009430 4.0e-37 159.1 118 64.4
FAN28G1973 Fragaria x ananassa HOM05D006567 ORTHO05D015939 4.0e-37 159.1 124 66.9
HPP92_025881 Vanilla planifolia HOM05D006567 ORTHO05D009430 3.4e-36 156.0 125 63.2
BcaC06g33542 Brassica carinata HOM05D006567 ORTHO05D015939 3.9e-32 142.5 95 69.5
SMO228G0171 Selaginella moellendorffii HOM05D006567 ORTHO05D009430 4.7e-30 135.6 125 57.6
AagrBONN_evm.TU.Sc2ySwM_228.3639 Anthoceros agrestis HOM05D006567 ORTHO05D009430 4.9e-27 125.6 116 53.4
Pp3c4_15440 Physcomitrium patens HOM05D006567 ORTHO05D009430 1.1e-26 124.4 129 51.9
Mapoly0040s0044 Marchantia polymorpha HOM05D006567 ORTHO05D009430 1.4e-26 124.0 117 54.7
FAN03G0029 Fragaria x ananassa HOM05D029736 ORTHO05D035707 6.0e-25 118.6 70 90.0
FAN25G2974 Fragaria x ananassa HOM05D029736 ORTHO05D035707 1.7e-24 117.1 73 83.6
CiPaw.11G081200 Carya illinoinensis HOM05D006567 ORTHO05D009430 4.6e-17 92.4 51 82.4
Os08g0148267 Oryza sativa ssp. japonica HOM05D006567 ORTHO05D009430 1.9e-15 87.0 55 72.7
FvH4_4g04780 Fragaria vesca HOM05D029736 ORTHO05D035707 5.3e-13 79.0 42 88.1
AL7G37260 Arabidopsis lyrata HOM05D006567 ORTHO05D015939 2.3e-08 63.5 43 67.4
Dinv39160 Davidia involucrata HOM05D006567 ORTHO05D009430 2.3e-08 63.5 35 80.0
Manes.01G082300 Manihot esculenta HOM05D006567 ORTHO05D009430 3.0e-08 63.2 35 80.0
FAN10G3463 Fragaria x ananassa HOM05D029736 ORTHO05D207028 1.6e-06 57.4 30 90.0


User provided reference genes

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