Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_5g07361 Fragaria vesca HOM05D005223 ORTHO05D006449 8.3e-180 633.6 332 100.0
FvH4_5g07490 Fragaria vesca HOM05D005223 ORTHO05D006449 3.7e-119 432.2 618 48.7
FAN18G3380 Fragaria x ananassa HOM05D005223 ORTHO05D006449 1.4e-118 430.3 618 48.7
FAN04G2946 Fragaria x ananassa HOM05D005223 ORTHO05D006449 3.1e-118 429.1 618 48.5
FAN13G2650 Fragaria x ananassa HOM05D005223 ORTHO05D006449 1.5e-117 426.8 623 48.2
RcHm_v2.0_Chr7g0191161 Rosa chinensis HOM05D005223 ORTHO05D006449 9.1e-94 347.8 622 43.2
MD14G1163600 Malus domestica HOM05D005223 ORTHO05D006449 8.2e-87 324.7 561 41.2
Prupe.5G157000 Prunus persica HOM05D005223 ORTHO05D006449 1.0e-84 317.8 552 40.9
Haze_07276 Corylus avellana HOM05D005223 ORTHO05D006449 2.7e-74 283.1 551 38.3
Cfa018892 Carpinus fangiana HOM05D005223 ORTHO05D006449 1.2e-72 277.7 556 38.1
QL10p005060 Quercus lobata HOM05D005223 ORTHO05D006449 1.2e-66 257.7 556 36.7
CANSAT80G2773 Cannabis sativa HOM05D005223 ORTHO05D006449 2.1e-66 256.9 562 35.2
CiPaw.12G035700 Carya illinoinensis HOM05D005223 ORTHO05D006449 2.1e-66 256.9 559 37.4
Lj1g0000662 Lotus japonicus HOM05D005223 ORTHO05D006449 1.4e-65 254.2 556 35.6
Atru.chr9.1012 Acer truncatum HOM05D005223 ORTHO05D006449 3.0e-65 253.1 562 35.2
Ciclev10018616m.g Citrus clementina HOM05D005223 ORTHO05D006449 9.8e-64 248.1 557 35.7
Psat5g141880 Pisum sativum HOM05D005223 ORTHO05D006449 6.3e-63 245.4 560 34.1
Dinv38469 Davidia involucrata HOM05D005223 ORTHO05D006449 8.3e-63 245.0 561 34.4
Ca_16089_v3 Cicer arietinum L. HOM05D005223 ORTHO05D006449 2.4e-62 243.4 560 33.8
VMungo1309G0017 Vigna mungo HOM05D005223 ORTHO05D006449 7.0e-62 241.9 558 34.2
GSVIVG01007540001 Vitis vinifera HOM05D005223 ORTHO05D006449 7.0e-62 241.9 558 33.7
Manes.06G115300 Manihot esculenta HOM05D005223 ORTHO05D006449 9.2e-62 241.5 573 34.2
TWI14G1297 Tripterygium wilfordii HOM05D005223 ORTHO05D006449 1.6e-61 240.7 553 34.7
Phvul.009G168800 Phaseolus vulgaris HOM05D005223 ORTHO05D006449 4.5e-61 239.2 559 35.1
Glyma.04G193000 Glycine max HOM05D005223 ORTHO05D006449 2.9e-60 236.5 561 34.4
FvH4_3g25520 Fragaria vesca HOM05D005223 ORTHO05D006449 3.8e-60 236.1 173 74.6
Hma1.2p1_0123F.1_g058130 Hydrangea macrophylla HOM05D005223 ORTHO05D006449 6.6e-60 235.3 558 33.2
Lalb_Chr08g0236961 Lupinus albus HOM05D005223 ORTHO05D006449 8.6e-60 235.0 549 34.2
SGA_v2.0_scaffold457G51932 Striga asiatica HOM05D005223 ORTHO05D006449 1.5e-59 234.2 561 32.8
Potri.015G090700 Populus trichocarpa HOM05D005223 ORTHO05D006449 5.6e-59 232.3 563 34.6
Medtr3g075100 Medicago truncatula HOM05D005223 ORTHO05D006449 1.6e-58 230.7 557 32.1
Rhsim08G0185000 Rhododendron simsii HOM05D005223 ORTHO05D006449 1.6e-58 230.7 564 32.4
Thecc.03G122800 Theobroma cacao HOM05D005223 ORTHO05D006449 2.1e-58 230.3 558 35.7
Gohir.A07G053500 Gossypium hirsutum HOM05D005223 ORTHO05D006449 3.6e-58 229.6 549 35.2
MSTRG.11293 Avicennia marina HOM05D005223 ORTHO05D006449 1.2e-56 224.6 558 32.6
TPR.G13978 Trifolium pratense HOM05D005223 ORTHO05D006449 1.2e-56 224.6 563 32.1
CSS0037650 Camellia sinensis var. sinensis HOM05D005223 ORTHO05D006449 2.0e-56 223.8 563 32.3
Gorai.001G061400 Gossypium raimondii HOM05D005223 ORTHO05D006449 2.0e-56 223.8 555 34.2
TAR629G2346 Trochodendron aralioides HOM05D005223 ORTHO05D006449 2.0e-56 223.8 558 34.1
Gohir.D07G057900 Gossypium hirsutum HOM05D005223 ORTHO05D006449 3.4e-56 223.0 554 34.5
CSS0005553 Camellia sinensis var. sinensis HOM05D005223 ORTHO05D006449 1.3e-55 221.1 553 32.4
Migut.I00475 Erythranthe guttata HOM05D005223 ORTHO05D006449 6.4e-55 218.8 558 30.8
Nn4g22461 Nelumbo nucifera HOM05D005223 ORTHO05D006449 4.1e-54 216.1 564 33.0
Duzib084G0239 Durio zibethinus HOM05D005223 ORTHO05D006449 7.0e-54 215.3 560 33.8
Lsat_1_v5_gn_5_13240 Lactuca sativa HOM05D005223 ORTHO05D006449 6.0e-53 212.2 531 32.6
vmacro19239 Vaccinium macrocarpon HOM05D005223 ORTHO05D006449 1.3e-52 211.1 582 31.3
Hund18539 Selenicereus undatus HOM05D005223 ORTHO05D006449 2.5e-51 206.8 549 31.3
ClCG03G003490 Citrullus lanatus HOM05D005223 ORTHO05D006449 1.2e-50 204.5 559 32.0
Sabra15G0112800 Salix brachista HOM05D005223 ORTHO05D000001 1.2e-50 204.5 544 34.2
Actinidia19387 Actinidia chinensis HOM05D005223 ORTHO05D006449 2.1e-50 203.8 515 31.8
Lj9C475T6 Lonicera japonica HOM05D005223 ORTHO05D006449 2.8e-50 203.4 575 31.1
Sed0011232 Sechium edule HOM05D005223 ORTHO05D006449 2.8e-50 203.4 559 32.4
THA.LOC104818196 Tarenaya hassleriana HOM05D005223 ORTHO05D006449 1.1e-49 201.4 545 30.8
Cc04_g10370 Coffea canephora HOM05D005223 ORTHO05D006449 1.4e-49 201.1 561 30.8
MELO3C002332.2 Cucumis melo HOM05D005223 ORTHO05D006449 1.4e-49 201.1 559 31.3
CsaV3_1G009290 Cucumis sativus L. HOM05D005223 ORTHO05D006449 4.0e-49 199.5 555 31.4
Eucgr.B00148 Eucalyptus grandis HOM05D005223 ORTHO05D006449 4.0e-49 199.5 553 31.5
Eucgr.L01337 Eucalyptus grandis HOM05D005223 ORTHO05D006449 4.0e-49 199.5 559 30.6
FvH4_5g07460 Fragaria vesca HOM05D005223 ORTHO05D006449 5.8e-48 195.7 226 56.6
Nitab4.5_0000955g0070 Nicotiana tabacum HOM05D005223 ORTHO05D006449 5.8e-48 195.7 553 32.5
arahy.Tifrunner.gnm1.ann1.D4E4RT Arachis hypogaea HOM05D005223 ORTHO05D006449 1.3e-47 194.5 587 31.3
Solyc10g006780.4 Solanum lycopersicum HOM05D005223 ORTHO05D006449 1.3e-47 194.5 556 30.2
PGSC0003DMG400025026 Solanum tuberosum HOM05D005223 ORTHO05D006449 1.3e-47 194.5 560 30.7
ECA246G2102 Erigeron canadensis HOM05D005223 ORTHO05D006449 3.7e-47 193.0 552 31.2
Sc10g0010350 Simmondsia chinensis HOM05D005223 ORTHO05D006449 8.3e-47 191.8 554 31.2
PGR083G1937 Punica granatum HOM05D005223 ORTHO05D006449 1.1e-46 191.4 567 30.3
Nitab4.5_0002775g0020 Nicotiana tabacum HOM05D005223 ORTHO05D006449 1.9e-46 190.7 553 32.5
HanXRQChr05g0154741 Helianthus annuus HOM05D005223 ORTHO05D006449 4.1e-46 189.5 543 29.8
AT3G48470 Arabidopsis thaliana HOM05D005223 ORTHO05D006449 9.2e-46 188.3 551 30.7
Carub.0005s1465 Capsella rubella HOM05D005223 ORTHO05D006449 1.2e-45 188.0 553 30.7
AL5G27880 Arabidopsis lyrata HOM05D005223 ORTHO05D006449 1.6e-45 187.6 555 31.0
Thhalv10010098m.g Eutrema salsugineum HOM05D005223 ORTHO05D006449 3.5e-45 186.4 519 32.8
Oeu057221.1 Olea europaea HOM05D005223 ORTHO05D006449 7.8e-45 185.3 239 45.2
Aqoxy5G03583 Aquilegia oxysepala HOM05D005223 ORTHO05D006449 5.0e-44 182.6 565 31.0
SalBow5G2547 Salvia bowleyana HOM05D005223 ORTHO05D006449 5.0e-44 182.6 592 28.0
CAN.G1110.40 Capsicum annuum HOM05D005223 ORTHO05D006449 8.6e-44 181.8 552 29.0
PSO063G1058 Papaver somniferum HOM05D005223 ORTHO05D006449 3.3e-43 179.9 574 30.7
Sopen10g002700 Solanum pennellii HOM05D005223 ORTHO05D006449 4.3e-43 179.5 558 29.9
DCAR_021603 Daucus carota HOM05D005223 ORTHO05D006449 1.2e-42 177.9 555 29.2
Sp5g13560 Schrenkiella parvula HOM05D005223 ORTHO05D006449 2.8e-42 176.8 557 30.0
CARHR157230 Cardamine hirsuta HOM05D005223 ORTHO05D006449 1.4e-41 174.5 552 29.7
Peaxi162Scf00536g00422 Petunia axillaris HOM05D005223 ORTHO05D006449 3.4e-40 169.9 524 30.3
A06p27680 Brassica napus HOM05D005223 ORTHO05D006449 4.4e-40 169.5 561 29.4
BcaC01g02344 Brassica carinata HOM05D005223 ORTHO05D006449 3.7e-39 166.4 551 29.9
C03p66340 Brassica napus HOM05D005223 ORTHO05D006449 3.7e-39 166.4 551 29.9
BraA06t25704Z Brassica rapa HOM05D005223 ORTHO05D006449 1.1e-38 164.9 578 29.2
BcaB02g10650 Brassica carinata HOM05D005223 ORTHO05D006449 3.5e-37 159.8 556 28.6
BolC3t18905H Brassica oleracea HOM05D005223 ORTHO05D006449 7.8e-37 158.7 571 28.9
CDE02G2587 Ceratophyllum demersum HOM05D005223 ORTHO05D006449 5.1e-36 156.0 564 28.9
EL10Ac7g18074 Beta vulgaris HOM05D005223 ORTHO05D006449 8.6e-36 155.2 505 29.5
FvH4_5g07461 Fragaria vesca HOM05D005223 ORTHO05D006449 1.1e-35 154.8 150 64.0
ATR0824G104 Amborella trichopoda HOM05D005223 ORTHO05D006449 2.5e-35 153.7 568 27.3
AUR62001278 Chenopodium quinoa HOM05D005223 ORTHO05D006449 8.1e-34 148.7 527 27.5
AUR62025728 Chenopodium quinoa HOM05D005223 ORTHO05D006449 3.1e-33 146.7 540 27.6
SGA_v2.0_scaffold50G18602 Striga asiatica HOM05D005223 ORTHO05D006449 1.5e-32 144.4 471 28.5
Zm00001eb246300 Zea mays HOM05D005223 ORTHO05D006449 6.0e-29 132.5 564 26.1
Os02g0598800 Oryza sativa ssp. japonica HOM05D005223 ORTHO05D006449 1.3e-28 131.3 546 25.8
Glyma.06G172900 Glycine max HOM05D005223 ORTHO05D006449 3.3e-27 126.7 157 49.7
MBI11_g36316_MAGBIO Magnolia biondii HOM05D005223 ORTHO05D006449 4.7e-26 122.9 156 49.4
COL.COLO4_09267 Corchorus olitorius HOM05D005223 ORTHO05D006449 8.1e-26 122.1 156 50.0
Cpa.g.sc52.35 Carica papaya HOM05D005223 ORTHO05D006449 9.0e-25 118.6 159 47.8
Aa31LG4G17050 Aethionema arabicum HOM05D005223 ORTHO05D006449 1.2e-21 108.2 196 39.8
arahy.Tifrunner.gnm1.ann1.9N92ER Arachis hypogaea HOM05D005223 ORTHO05D006449 4.6e-21 106.3 154 48.1
Cpa.g.sc52.34 Carica papaya HOM05D005223 ORTHO05D006449 8.7e-20 102.1 132 46.2
Aa31LG4G17060 Aethionema arabicum HOM05D005223 ORTHO05D006449 9.6e-19 98.6 156 42.9
SHI10647 Sapria himalayana HOM05D005223 ORTHO05D006449 8.1e-18 95.5 155 44.5
Nn3g20975 Nelumbo nucifera HOM05D005223 ORTHO05D006449 6.9e-17 92.4 94 57.4
Os02g0599100 Oryza sativa ssp. japonica HOM05D005223 ORTHO05D006449 3.4e-16 90.1 152 38.2
Os02g0598400 Oryza sativa ssp. japonica HOM05D005223 ORTHO05D006449 7.6e-16 89.0 152 38.2
HPP92_024695 Vanilla planifolia HOM05D005223 ORTHO05D006449 1.0e-12 78.6 141 41.1
RcHm_v2.0_Chr1g0339741 Rosa chinensis HOM05D005223 ORTHO05D006449 3.0e-12 77.0 46 80.4
SalBow5G3736 Salvia bowleyana HOM05D005223 ORTHO05D006449 6.7e-12 75.9 57 57.9
SalBow1G2179 Salvia bowleyana HOM05D005223 ORTHO05D006449 1.1e-11 75.1 48 68.8
SalBow1G1130 Salvia bowleyana HOM05D005223 ORTHO05D006449 5.6e-11 72.8 48 66.7
SEGI_02888 Sequoiadendron giganteum HOM05D005223 ORTHO05D006449 1.3e-10 71.6 143 35.7
RcHm_v2.0_Chr6g0278011 Rosa chinensis HOM05D005223 ORTHO05D006449 1.4e-09 68.2 47 70.2
QL10p005098 Quercus lobata HOM05D005223 ORTHO05D006449 1.8e-09 67.8 45 73.3
RcHm_v2.0_Chr4g0412201 Rosa chinensis HOM05D005223 ORTHO05D006449 1.8e-09 67.8 46 73.9
Mapoly0075s0016 Marchantia polymorpha HOM05D005223 ORTHO05D006449 5.8e-08 62.8 217 27.2
Pp3c24_17160 Physcomitrium patens HOM05D005223 ORTHO05D006449 1.3e-07 61.6 201 27.9
ECA246G0437 Erigeron canadensis HOM05D005223 ORTHO05D006449 2.2e-07 60.8 34 85.3
SMO367G0489 Selaginella moellendorffii HOM05D005223 ORTHO05D006449 1.1e-06 58.5 125 39.2


User provided reference genes

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