Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_5g07120 Fragaria vesca HOM05D002040 ORTHO05D002502 2.9e-176 621.7 293 100.0
FAN08G0552 Fragaria x ananassa HOM05D002040 ORTHO05D002502 6.8e-101 371.3 231 80.1
FAN04G0798 Fragaria x ananassa HOM05D001153 ORTHO05D000949 2.4e-13 80.5 42 83.3
Nitab4.5_0002531g0120 Nicotiana tabacum HOM05D002040 ORTHO05D002502 2.9e-11 73.6 47 68.1
Thecc.03G120700 Theobroma cacao HOM05D002040 ORTHO05D002502 1.6e-09 67.8 35 85.7
Dinv38488 Davidia involucrata HOM05D002040 ORTHO05D002502 2.1e-09 67.4 38 78.9
RcHm_v2.0_Chr7g0191661 Rosa chinensis HOM05D002040 ORTHO05D002502 2.1e-09 67.4 35 85.7
CANSAT80G1622 Cannabis sativa HOM05D002040 ORTHO05D002502 2.7e-09 67.0 35 82.9
Sabra15G0111300 Salix brachista HOM05D002040 ORTHO05D002502 3.6e-09 66.6 35 82.9
FvH4_5g07020 Fragaria vesca HOM05D002040 ORTHO05D002502 4.7e-09 66.2 35 82.9
FAN04G2248 Fragaria x ananassa HOM05D002040 ORTHO05D002502 4.7e-09 66.2 35 82.9
FAN08G0079 Fragaria x ananassa HOM05D002040 ORTHO05D002502 4.7e-09 66.2 35 82.9
FAN13G1060 Fragaria x ananassa HOM05D002040 ORTHO05D002502 4.7e-09 66.2 35 82.9
FAN18G4283 Fragaria x ananassa HOM05D002040 ORTHO05D002502 4.7e-09 66.2 35 82.9
Manes.14G056036 Manihot esculenta HOM05D002040 ORTHO05D002502 4.7e-09 66.2 35 82.9
DCAR_021601 Daucus carota HOM05D002040 ORTHO05D002502 6.1e-09 65.9 34 85.3
HanXRQChr05g0158441 Helianthus annuus HOM05D002040 ORTHO05D002502 6.1e-09 65.9 35 82.9
Ah.08g218320 Amaranthus hybridus HOM05D002040 ORTHO05D002502 7.9e-09 65.5 35 80.0
CSS0016266 Camellia sinensis var. sinensis HOM05D002040 ORTHO05D002502 7.9e-09 65.5 35 82.9
CSS0047587 Camellia sinensis var. sinensis HOM05D002040 ORTHO05D002502 7.9e-09 65.5 35 82.9
Duzib068G1401 Durio zibethinus HOM05D002040 ORTHO05D002502 7.9e-09 65.5 35 82.9
Duzib205G1068 Durio zibethinus HOM05D002040 ORTHO05D002502 7.9e-09 65.5 35 82.9
Gohir.A03G063000 Gossypium hirsutum HOM05D002040 ORTHO05D002502 7.9e-09 65.5 35 82.9
Gohir.D03G103300 Gossypium hirsutum HOM05D002040 ORTHO05D002502 7.9e-09 65.5 35 82.9
Gorai.003G108800 Gossypium raimondii HOM05D002040 ORTHO05D002502 7.9e-09 65.5 35 82.9
Lsat_1_v5_gn_5_13080 Lactuca sativa HOM05D002040 ORTHO05D002502 7.9e-09 65.5 35 80.0
Nitab4.5_0002531g0080 Nicotiana tabacum HOM05D002040 ORTHO05D002502 7.9e-09 65.5 38 73.7
Peaxi162Scf00089g00936 Petunia axillaris HOM05D002040 ORTHO05D002502 7.9e-09 65.5 35 82.9
Sabra12G0066600 Salix brachista HOM05D002040 ORTHO05D002502 7.9e-09 65.5 35 82.9
GSVIVG01007575001 Vitis vinifera HOM05D002040 ORTHO05D002502 7.9e-09 65.5 35 82.9
Dinv11119 Davidia involucrata HOM05D002040 ORTHO05D002502 1.0e-08 65.1 35 80.0
Cfa018905 Carpinus fangiana HOM05D002040 ORTHO05D002502 1.4e-08 64.7 35 80.0
CiPaw.11G013500 Carya illinoinensis HOM05D002040 ORTHO05D002502 1.4e-08 64.7 35 80.0
Haze_07290 Corylus avellana HOM05D002040 ORTHO05D002502 1.4e-08 64.7 35 80.0
HanXRQChr05g0156131 Helianthus annuus HOM05D002040 ORTHO05D002502 1.4e-08 64.7 34 82.4
PSO063G6142 Papaver somniferum HOM05D002040 ORTHO05D002502 1.4e-08 64.7 34 82.4
PSO782G1163 Papaver somniferum HOM05D002040 ORTHO05D002502 1.4e-08 64.7 34 82.4
QL10p005613 Quercus lobata HOM05D002040 ORTHO05D002502 1.4e-08 64.7 35 80.0
Actinidia08849 Actinidia chinensis HOM05D006000 ORTHO05D007749 1.8e-08 64.3 55 61.8
Actinidia16201 Actinidia chinensis HOM05D002040 ORTHO05D002502 1.8e-08 64.3 35 80.0
Actinidia19374 Actinidia chinensis HOM05D002040 ORTHO05D002502 1.8e-08 64.3 35 80.0
MELO3C002324.2 Cucumis melo HOM05D002040 ORTHO05D002502 1.8e-08 64.3 35 80.0
CsaV3_1G009180 Cucumis sativus L. HOM05D002040 ORTHO05D002502 1.8e-08 64.3 35 80.0
Eucgr.K02766 Eucalyptus grandis HOM05D002040 ORTHO05D002502 1.8e-08 64.3 35 80.0
Potri.015G088300 Populus trichocarpa HOM05D002040 ORTHO05D002502 1.8e-08 64.3 35 82.9
PGR044G0305 Punica granatum HOM05D002040 ORTHO05D002502 1.8e-08 64.3 35 80.0
Nitab4.5_0001360g0090 Nicotiana tabacum HOM05D002040 ORTHO05D002502 2.3e-08 63.9 35 80.0
Atru.chr9.987 Acer truncatum HOM05D002040 ORTHO05D002502 3.0e-08 63.5 34 82.4
CAN.G472.47 Capsicum annuum HOM05D002040 ORTHO05D002502 3.0e-08 63.5 35 77.1
TAR629G0161 Trochodendron aralioides HOM05D002040 ORTHO05D002502 3.0e-08 63.5 35 77.1
Lj9A473G60 Lonicera japonica HOM05D002040 ORTHO05D002502 3.9e-08 63.2 35 80.0
MD14G1166300 Malus domestica HOM05D002040 ORTHO05D002502 5.1e-08 62.8 30 93.3
Prupe.5G160100 Prunus persica HOM05D002040 ORTHO05D002502 5.1e-08 62.8 30 93.3
Rhsim08G0183000 Rhododendron simsii HOM05D002040 ORTHO05D002502 5.1e-08 62.8 50 58.0
Sed0021106 Sechium edule HOM05D002040 ORTHO05D002502 5.1e-08 62.8 35 80.0
Sed0025036 Sechium edule HOM05D002040 ORTHO05D002502 5.1e-08 62.8 35 80.0
Hund18530 Selenicereus undatus HOM05D002040 ORTHO05D002502 5.1e-08 62.8 71 46.5
vmacro19256 Vaccinium macrocarpon HOM05D002040 ORTHO05D002502 5.1e-08 62.8 35 77.1
Cc04_g10670 Coffea canephora HOM05D002040 ORTHO05D002502 6.7e-08 62.4 35 80.0
ECA246G0233 Erigeron canadensis HOM05D002040 ORTHO05D002502 6.7e-08 62.4 35 77.1
Migut.D02040 Erythranthe guttata HOM05D002040 ORTHO05D002502 6.7e-08 62.4 35 80.0
Gohir.D07G058500 Gossypium hirsutum HOM05D002040 ORTHO05D002502 6.7e-08 62.4 35 80.0
Gorai.001G062000 Gossypium raimondii HOM05D002040 ORTHO05D002502 6.7e-08 62.4 35 80.0
Hma1.2p1_0014F.1_g009970 Hydrangea macrophylla HOM05D002040 ORTHO05D002502 6.7e-08 62.4 35 80.0
Potri.012G091900 Populus trichocarpa HOM05D002040 ORTHO05D002502 6.7e-08 62.4 35 80.0
TWI14G0866 Tripterygium wilfordii HOM05D002040 ORTHO05D002502 6.7e-08 62.4 35 80.0
arahy.Tifrunner.gnm1.ann1.MT8Q6Z Arachis hypogaea HOM05D002040 ORTHO05D002502 8.8e-08 62.0 35 74.3
arahy.Tifrunner.gnm1.ann1.VJWP7R Arachis hypogaea HOM05D002040 ORTHO05D002502 8.8e-08 62.0 35 74.3
Ciclev10019069m.g Citrus clementina HOM05D002040 ORTHO05D002502 8.8e-08 62.0 35 80.0
THA.LOC104818201 Tarenaya hassleriana HOM05D002040 ORTHO05D002502 8.8e-08 62.0 35 77.1
Aqoxy5G03621 Aquilegia oxysepala HOM05D002040 ORTHO05D002502 1.1e-07 61.6 35 74.3
MD06G1160300 Malus domestica HOM05D002040 ORTHO05D002502 1.1e-07 61.6 35 77.1
MSTRG.23188 Avicennia marina HOM05D002040 ORTHO05D002502 1.5e-07 61.2 35 80.0
CSS0003328 Camellia sinensis var. sinensis HOM05D002040 ORTHO05D002502 1.5e-07 61.2 35 80.0
ClCG03G003370 Citrullus lanatus HOM05D002040 ORTHO05D002502 2.0e-07 60.8 36 72.2
Lj5A101G108 Lonicera japonica HOM05D002040 ORTHO05D002502 2.0e-07 60.8 31 83.9
SHI17333 Sapria himalayana HOM05D002040 ORTHO05D002502 2.0e-07 60.8 35 77.1
Sc04g0001040 Simmondsia chinensis HOM05D002040 ORTHO05D002502 2.0e-07 60.8 35 77.1
Solyc03g111640.4 Solanum lycopersicum HOM05D002040 ORTHO05D002502 2.0e-07 60.8 35 74.3
Sopen03g030760 Solanum pennellii HOM05D002040 ORTHO05D002502 2.0e-07 60.8 35 74.3
TWI09G0592 Tripterygium wilfordii HOM05D002040 ORTHO05D002502 2.0e-07 60.8 35 74.3
Aa31LG1G18780 Aethionema arabicum HOM05D002040 ORTHO05D002502 2.6e-07 60.5 35 74.3
Glyma.17G126700 Glycine max HOM05D002040 ORTHO05D002502 2.6e-07 60.5 35 77.1
Lj4g0014559 Lotus japonicus HOM05D002040 ORTHO05D002502 2.6e-07 60.5 35 74.3
MBI08_g31847_MAGBIO Magnolia biondii HOM05D002040 ORTHO05D002502 2.6e-07 60.5 35 74.3
THA.LOC104825001 Tarenaya hassleriana HOM05D002040 ORTHO05D002502 2.6e-07 60.5 35 77.1
TAR622G0169 Trochodendron aralioides HOM05D002040 ORTHO05D002502 2.6e-07 60.5 35 74.3
Migut.O00223 Erythranthe guttata HOM05D002040 ORTHO05D002502 3.3e-07 60.1 35 77.1
CiPaw.12G034300 Carya illinoinensis HOM05D002040 ORTHO05D002502 4.4e-07 59.7 35 74.3
Nn4g22509 Nelumbo nucifera HOM05D002040 ORTHO05D002502 4.4e-07 59.7 35 74.3
EL10Ac7g18050 Beta vulgaris HOM05D002040 ORTHO05D002502 5.7e-07 59.3 35 74.3
Cpa.g.sc4.43 Carica papaya HOM05D002040 ORTHO05D002502 5.7e-07 59.3 52 53.8
Glyma.04G191500 Glycine max HOM05D002040 ORTHO05D002502 5.7e-07 59.3 34 76.5
VMungo1215G0408 Vigna mungo HOM05D002040 ORTHO05D002502 5.7e-07 59.3 35 77.1
CAN.G472.48 Capsicum annuum HOM05D002040 ORTHO05D002502 7.4e-07 58.9 35 71.4
Phvul.003G207600 Phaseolus vulgaris HOM05D002040 ORTHO05D002502 7.4e-07 58.9 35 77.1
MSTRG.11517 Avicennia marina HOM05D002040 ORTHO05D002502 9.7e-07 58.5 35 77.1
AUR62001259 Chenopodium quinoa HOM05D002040 ORTHO05D002502 9.7e-07 58.5 71 46.5
FAN13G0775 Fragaria x ananassa HOM05D002040 ORTHO05D032388 9.7e-07 58.5 31 80.6
Oeu053503.1 Olea europaea HOM05D002040 ORTHO05D002502 9.7e-07 58.5 44 61.4
ATR0824G002 Amborella trichopoda HOM05D002040 ORTHO05D002502 1.3e-06 58.2 35 71.4
CARHR232190 Cardamine hirsuta HOM05D002040 ORTHO05D002502 1.3e-06 58.2 34 73.5
Ca_26533_v3 Cicer arietinum L. HOM05D002040 ORTHO05D002502 1.3e-06 58.2 34 73.5
Glyma.05G044200 Glycine max HOM05D002040 ORTHO05D002502 1.3e-06 58.2 35 77.1
Solyc03g111630.4 Solanum lycopersicum HOM05D002040 ORTHO05D002502 1.3e-06 58.2 35 74.3
Actinidia36774 Actinidia chinensis HOM05D002040 ORTHO05D002502 1.7e-06 57.8 32 78.1
TWI39G0160 Tripterygium wilfordii HOM05D002040 ORTHO05D002502 1.7e-06 57.8 35 71.4
Lalb_Chr12g0202051 Lupinus albus HOM05D002040 ORTHO05D002502 2.2e-06 57.4 34 76.5
Medtr4g104360 Medicago truncatula HOM05D002040 ORTHO05D002502 2.2e-06 57.4 34 73.5
unitig_26.g9611 Utricularia gibba HOM05D002040 ORTHO05D002502 2.2e-06 57.4 35 74.3
AT4G24800 Arabidopsis thaliana HOM05D002040 ORTHO05D002502 2.8e-06 57.0 34 70.6
Carub.0007s1626 Capsella rubella HOM05D002040 ORTHO05D002502 2.8e-06 57.0 34 70.6
CDE06G2849 Ceratophyllum demersum HOM05D002040 ORTHO05D002502 2.8e-06 57.0 35 74.3
Thhalv10003735m.g Eutrema salsugineum HOM05D002040 ORTHO05D002502 2.8e-06 57.0 35 71.4
Peaxi162Scf00025g00324 Petunia axillaris HOM05D037237 ORTHO05D037292 2.8e-06 57.0 32 78.1
TPR.G37517 Trifolium pratense HOM05D002040 ORTHO05D002502 3.7e-06 56.6 34 70.6
AL7G28390 Arabidopsis lyrata HOM05D002040 ORTHO05D002502 4.8e-06 56.2 34 70.6
HPP92_006210 Vanilla planifolia HOM05D002040 ORTHO05D002502 6.3e-06 55.8 35 68.6
CARHR043640 Cardamine hirsuta HOM05D002040 ORTHO05D002502 8.2e-06 55.5 68 48.5
COL.COLO4_04550 Corchorus olitorius HOM05D002040 ORTHO05D002502 8.2e-06 55.5 30 80.0


User provided reference genes

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