Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_5g07000 Fragaria vesca HOM05D004981 ORTHO05D005635 9.5e-191 670.2 397 100.0
FAN18G1425 Fragaria x ananassa HOM05D004981 ORTHO05D005635 2.3e-184 649.0 397 91.7
FAN04G0403 Fragaria x ananassa HOM05D004981 ORTHO05D005635 6.4e-179 630.9 397 90.9
FAN08G0200 Fragaria x ananassa HOM05D004981 ORTHO05D005635 2.0e-172 609.4 390 94.1
RcHm_v2.0_Chr7g0191681 Rosa chinensis HOM05D004981 ORTHO05D005635 9.4e-138 494.2 404 78.7
FAN08G2142 Fragaria x ananassa HOM05D004981 ORTHO05D005635 1.5e-135 486.9 374 79.7
FAN21G1455 Fragaria x ananassa HOM05D004981 ORTHO05D005635 4.9e-102 375.6 374 69.3
MD05G1045100 Malus domestica HOM05D004981 ORTHO05D005635 8.1e-73 278.5 423 53.0
CANSAT11G0061 Cannabis sativa HOM05D004981 ORTHO05D005635 1.4e-69 267.7 402 52.5
Dinv24195 Davidia involucrata HOM05D004981 ORTHO05D005635 1.9e-69 267.3 421 49.6
Prupe.8G061500 Prunus persica HOM05D004981 ORTHO05D005635 1.6e-68 264.2 386 50.0
CSS0034779 Camellia sinensis var. sinensis HOM05D004981 ORTHO05D005635 1.5e-66 257.7 403 49.9
Gohir.A03G173700 Gossypium hirsutum HOM05D004981 ORTHO05D005635 1.9e-66 257.3 412 47.6
Actinidia28057 Actinidia chinensis HOM05D004981 ORTHO05D007483 7.3e-66 255.4 410 47.6
arahy.Tifrunner.gnm1.ann1.NS4PA6 Arachis hypogaea HOM05D004981 ORTHO05D005635 7.3e-66 255.4 417 47.2
arahy.Tifrunner.gnm1.ann1.NXB9BB Arachis hypogaea HOM05D004981 ORTHO05D005635 9.6e-66 255.0 418 47.4
Lj6g0025255 Lotus japonicus HOM05D004981 ORTHO05D005635 1.3e-65 254.6 420 46.9
Ca_00133_v3 Cicer arietinum L. HOM05D004981 ORTHO05D005635 2.8e-65 253.4 417 48.2
TWI59G1067 Tripterygium wilfordii HOM05D004981 ORTHO05D005635 2.8e-65 253.4 411 48.7
PGR142G3166 Punica granatum HOM05D004981 ORTHO05D005635 8.1e-65 251.9 398 49.5
GSVIVG01029180001 Vitis vinifera HOM05D004981 ORTHO05D005635 8.1e-65 251.9 424 48.3
MELO3C018646.2 Cucumis melo HOM05D004981 ORTHO05D005635 1.8e-64 250.8 414 48.1
Rhsim05G0107500 Rhododendron simsii HOM05D004981 ORTHO05D005635 4.0e-64 249.6 445 44.3
Cpa.g.sc49.24 Carica papaya HOM05D004981 ORTHO05D005635 9.0e-64 248.4 320 51.9
Duzib132G0770 Durio zibethinus HOM05D004981 ORTHO05D005635 3.4e-63 246.5 430 47.4
Gorai.005G219800 Gossypium raimondii HOM05D004981 ORTHO05D005635 3.4e-63 246.5 417 47.2
Potri.001G205700 Populus trichocarpa HOM05D004981 ORTHO05D005635 3.4e-63 246.5 437 44.6
Prupe.5G160300 Prunus persica HOM05D004981 ORTHO05D005635 3.4e-63 246.5 411 50.4
Sed0011642 Sechium edule HOM05D004981 ORTHO05D005635 3.4e-63 246.5 416 47.1
Atru.chr5.2124 Acer truncatum HOM05D004981 ORTHO05D005635 4.4e-63 246.1 429 45.9
Cc02_g21590 Coffea canephora HOM05D004981 ORTHO05D005635 4.4e-63 246.1 407 46.2
CsaV3_7G006460 Cucumis sativus L. HOM05D004981 ORTHO05D005635 7.6e-63 245.4 414 47.6
VMungo0540G0644 Vigna mungo HOM05D004981 ORTHO05D005635 7.6e-63 245.4 394 48.0
Rhsim05G0107600 Rhododendron simsii HOM05D004981 ORTHO05D005635 9.9e-63 245.0 448 43.3
Manes.06G012400 Manihot esculenta HOM05D004981 ORTHO05D005635 1.3e-62 244.6 436 47.0
Gohir.D13G054600 Gossypium hirsutum HOM05D004981 ORTHO05D005635 1.7e-62 244.2 413 47.9
Potri.003G023700 Populus trichocarpa HOM05D004981 ORTHO05D005635 1.7e-62 244.2 415 46.7
PGSC0003DMG400011507 Solanum tuberosum HOM05D004981 ORTHO05D005635 1.7e-62 244.2 412 47.6
Gohir.D02G196800 Gossypium hirsutum HOM05D004981 ORTHO05D005635 2.2e-62 243.8 417 46.8
Gorai.013G061400 Gossypium raimondii HOM05D004981 ORTHO05D005635 2.2e-62 243.8 413 47.9
ClCG09G015370 Citrullus lanatus HOM05D004981 ORTHO05D005635 6.4e-62 242.3 418 47.6
Phvul.006G206700 Phaseolus vulgaris HOM05D004981 ORTHO05D005635 2.4e-61 240.4 390 48.5
Thecc.02G139100 Theobroma cacao HOM05D004981 ORTHO05D005635 2.4e-61 240.4 432 47.5
Solyc04g009060.4 Solanum lycopersicum HOM05D004981 ORTHO05D005635 3.2e-61 240.0 414 47.6
Sopen04g004240 Solanum pennellii HOM05D004981 ORTHO05D005635 3.2e-61 240.0 414 48.3
TAR114G0002 Trochodendron aralioides HOM05D004981 ORTHO05D005635 7.1e-61 238.8 290 53.8
MBI02_g08724_MAGBIO Magnolia biondii HOM05D004981 ORTHO05D005635 9.3e-61 238.4 399 47.6
Cfa005605 Carpinus fangiana HOM05D004981 ORTHO05D005635 1.6e-60 237.7 270 57.0
MD14G1166200 Malus domestica HOM05D004981 ORTHO05D005635 1.6e-60 237.7 410 47.1
CiPaw.06G153000 Carya illinoinensis HOM05D004981 ORTHO05D005635 2.7e-60 236.9 331 49.8
Gohir.A13G067000 Gossypium hirsutum HOM05D004981 ORTHO05D005635 2.7e-60 236.9 425 46.6
CAN.G274.6 Capsicum annuum HOM05D004981 ORTHO05D005635 3.9e-59 233.0 404 46.3
Medtr2g008810 Medicago truncatula HOM05D004981 ORTHO05D005635 3.9e-59 233.0 391 48.3
QL11p020696 Quercus lobata HOM05D004981 ORTHO05D005635 3.9e-59 233.0 391 44.0
Glyma.15G053300 Glycine max HOM05D004981 ORTHO05D005635 6.6e-59 232.3 434 44.9
Lalb_Chr20g0123041 Lupinus albus HOM05D004981 ORTHO05D005635 8.7e-59 231.9 417 47.7
COL.COLO4_24958 Corchorus olitorius HOM05D004981 ORTHO05D005635 1.1e-58 231.5 300 52.0
Lj5A239G83 Lonicera japonica HOM05D004981 ORTHO05D005635 1.5e-58 231.1 274 55.1
HanXRQChr16g0514321 Helianthus annuus HOM05D004981 ORTHO05D005635 2.5e-58 230.3 390 47.4
Duzib248G0633 Durio zibethinus HOM05D004981 ORTHO05D005635 3.3e-58 229.9 380 45.3
Nn5g30124 Nelumbo nucifera HOM05D004981 ORTHO05D005635 7.3e-58 228.8 419 44.6
CDE10G0645 Ceratophyllum demersum HOM05D004981 ORTHO05D005635 9.6e-58 228.4 424 44.8
Oeu047361.1 Olea europaea HOM05D004981 ORTHO05D005635 9.6e-58 228.4 382 43.5
Glyma.08G179200 Glycine max HOM05D004981 ORTHO05D005635 2.8e-57 226.9 432 44.4
Nitab4.5_0008051g0010 Nicotiana tabacum HOM05D004981 ORTHO05D005635 3.6e-57 226.5 318 48.1
Ciclev10025761m.g Citrus clementina HOM05D004981 ORTHO05D005635 1.2e-55 221.5 417 43.2
Hma1.2p1_0704F.1_g206680 Hydrangea macrophylla HOM05D004981 ORTHO05D005635 2.0e-55 220.7 345 48.7
Eucgr.I02666 Eucalyptus grandis HOM05D004981 ORTHO05D005635 2.6e-55 220.3 251 55.8
Lsat_1_v5_gn_5_107300 Lactuca sativa HOM05D004981 ORTHO05D005635 3.4e-55 219.9 398 47.0
Migut.B00612 Erythranthe guttata HOM05D004981 ORTHO05D005635 9.9e-55 218.4 402 44.5
Peaxi162Scf00152g01024 Petunia axillaris HOM05D004981 ORTHO05D005635 9.9e-55 218.4 342 45.6
Sc20g0002060 Simmondsia chinensis HOM05D004981 ORTHO05D005635 9.9e-55 218.4 314 47.8
ECA234G4021 Erigeron canadensis HOM05D004981 ORTHO05D005635 2.9e-54 216.9 402 45.8
Dinv09034 Davidia involucrata HOM05D004981 ORTHO05D005635 6.4e-54 215.7 252 54.4
PSO781G0052 Papaver somniferum HOM05D004981 ORTHO05D005635 1.1e-53 214.9 414 47.6
TPR.G9514 Trifolium pratense HOM05D004981 ORTHO05D005635 3.2e-53 213.4 339 47.8
SGA_v2.0_scaffold83G26298 Striga asiatica HOM05D004981 ORTHO05D005635 1.2e-52 211.5 421 40.6
Zm00001eb311320 Zea mays HOM05D004981 ORTHO05D005635 6.0e-52 209.1 401 43.4
SalBow5G0436 Salvia bowleyana HOM05D004981 ORTHO05D005635 1.0e-51 208.4 390 44.6
ATR0753G166 Amborella trichopoda HOM05D004981 ORTHO05D005635 1.3e-51 208.0 436 41.5
Psat1g216680 Pisum sativum HOM05D004981 ORTHO05D005635 1.3e-51 208.0 351 42.7
Sabra01G0158000 Salix brachista HOM05D004981 ORTHO05D005635 2.3e-51 207.2 409 42.1
EL10Ac9g21471 Beta vulgaris HOM05D004981 ORTHO05D005635 2.5e-50 203.8 385 44.7
AUR62010122 Chenopodium quinoa HOM05D004981 ORTHO05D005635 9.6e-50 201.8 382 43.5
Aa31LG3G17630 Aethionema arabicum HOM05D004981 ORTHO05D005635 2.8e-49 200.3 392 42.6
BolC9t59557H Brassica oleracea HOM05D004981 ORTHO05D005635 3.7e-49 199.9 282 47.2
A10p27880 Brassica napus HOM05D004981 ORTHO05D005635 4.8e-49 199.5 393 41.2
RcHm_v2.0_Chr7g0224681 Rosa chinensis HOM05D004981 ORTHO05D005635 8.1e-49 198.7 221 56.1
MSTRG.20297 Avicennia marina HOM05D004981 ORTHO05D005635 1.1e-48 198.4 263 47.9
BraA10t44837Z Brassica rapa HOM05D004981 ORTHO05D005635 1.8e-48 197.6 281 48.8
Sp6g33940 Schrenkiella parvula HOM05D004981 ORTHO05D005635 3.1e-48 196.8 389 43.2
C09p67980 Brassica napus HOM05D004981 ORTHO05D005635 4.0e-48 196.4 282 46.8
Nitab4.5_0000480g0020 Nicotiana tabacum HOM05D004981 ORTHO05D005635 4.0e-48 196.4 334 42.2
Oeu011769.5 Olea europaea HOM05D004981 ORTHO05D005635 9.0e-48 195.3 397 40.3
SEGI_39436 Sequoiadendron giganteum HOM05D004981 ORTHO05D005635 1.0e-46 191.8 370 39.7
PSO541G0435 Papaver somniferum HOM05D004981 ORTHO05D005635 1.3e-46 191.4 410 44.6
THA.LOC104818438 Tarenaya hassleriana HOM05D004981 ORTHO05D005635 1.7e-46 191.0 407 41.0
vmacro19928 Vaccinium macrocarpon HOM05D004981 ORTHO05D005635 1.7e-46 191.0 525 38.3
DCAR_021855 Daucus carota HOM05D004981 ORTHO05D005635 4.9e-46 189.5 390 40.0
Aqoxy6G00803 Aquilegia oxysepala HOM05D004981 ORTHO05D005635 8.4e-46 188.7 392 40.8
AUR62013118 Chenopodium quinoa HOM05D004981 ORTHO05D005635 1.9e-45 187.6 437 38.0
TPR.G21754 Trifolium pratense HOM05D004981 ORTHO05D005635 3.2e-45 186.8 238 52.5
Sabra03G0014800 Salix brachista HOM05D004981 ORTHO05D005635 5.5e-45 186.0 235 52.3
Mapoly0041s0053 Marchantia polymorpha HOM05D004981 ORTHO05D005635 4.6e-44 183.0 395 42.8
BcaB08g37209 Brassica carinata HOM05D004981 ORTHO05D005635 6.0e-44 182.6 374 41.4
AT5G09390 Arabidopsis thaliana HOM05D004981 ORTHO05D005635 1.6e-41 174.5 389 40.6
Hund00058 Selenicereus undatus HOM05D004981 ORTHO05D005635 1.6e-41 174.5 269 48.0
Carub.0006s0794 Capsella rubella HOM05D004981 ORTHO05D005635 3.1e-40 170.2 230 50.4
FvH4_4g13240 Fragaria vesca HOM05D004981 ORTHO05D005635 3.1e-40 170.2 273 46.9
Os09g0372400 Oryza sativa ssp. japonica HOM05D004981 ORTHO05D005635 5.3e-40 169.5 323 43.7
AL6G19780 Arabidopsis lyrata HOM05D004981 ORTHO05D005635 1.5e-39 167.9 389 40.9
Medtr5g017190 Medicago truncatula HOM05D004981 ORTHO05D005635 2.0e-39 167.5 242 48.3
Thhalv10013574m.g Eutrema salsugineum HOM05D004981 ORTHO05D005635 7.6e-39 165.6 228 48.2
COL.COLO4_15286 Corchorus olitorius HOM05D004981 ORTHO05D005635 3.2e-37 160.2 262 44.7
Pp3c22_4170 Physcomitrium patens HOM05D004981 ORTHO05D005635 7.1e-37 159.1 390 39.5
CARHR204020 Cardamine hirsuta HOM05D004981 ORTHO05D005635 2.3e-35 154.1 372 37.6
CBR_g31506 Chara braunii HOM05D004981 ORTHO05D005635 5.1e-35 152.9 277 39.0
HPP92_013108 Vanilla planifolia HOM05D004981 ORTHO05D005635 3.7e-33 146.7 231 44.2
AagrBONN_evm.TU.Sc2ySwM_117.1804 Anthoceros agrestis HOM05D004981 ORTHO05D005635 1.8e-32 144.4 226 43.4
FAN12G0625 Fragaria x ananassa HOM05D004981 ORTHO05D005635 1.5e-31 141.4 111 74.8
Lj1g0016172 Lotus japonicus HOM05D004981 ORTHO05D005635 7.7e-31 139.0 254 43.3
FAN17G2803 Fragaria x ananassa HOM05D004981 ORTHO05D005635 8.5e-30 135.6 152 56.6
SMO356G0631 Selaginella moellendorffii HOM05D004981 ORTHO05D005635 7.9e-28 129.0 239 41.8
HPP92_013085 Vanilla planifolia HOM05D004981 ORTHO05D005635 1.8e-27 127.9 322 34.5
Ah.01g009580 Amaranthus hybridus HOM05D004981 ORTHO05D005635 4.5e-23 113.2 264 37.5
FAN07G1886 Fragaria x ananassa HOM05D004981 ORTHO05D005635 1.7e-17 94.7 74 75.7
VMungo1383G1991 Vigna mungo HOM05D004981 ORTHO05D005635 2.2e-17 94.4 142 47.9
Ah.01g009610 Amaranthus hybridus HOM05D004981 ORTHO05D005635 2.2e-14 84.3 158 41.1
Thecc.06G050700 Theobroma cacao HOM05D004981 ORTHO05D005635 1.6e-12 78.2 88 51.1
Lsat_1_v5_gn_5_82561 Lactuca sativa HOM05D004981 ORTHO05D005635 2.7e-12 77.4 79 60.8
C05p07220 Brassica napus HOM05D001624 ORTHO05D005635 2.2e-09 67.8 108 44.4
Dinv07233 Davidia involucrata HOM05D004981 ORTHO05D005635 3.5e-07 60.5 67 50.7
Cre06.g299450 Chlamydomonas reinhardtii HOM05D004981 ORTHO05D005635 4.5e-07 60.1 139 32.4
PRCOL_00000241 Prasinoderma coloniale HOM05D004981 ORTHO05D005635 3.8e-06 57.0 196 29.1


User provided reference genes

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