Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_5g06990 Fragaria vesca HOM05D006000 ORTHO05D007749 0.0e+00 1338.2 658 100.0
FAN08G3509 Fragaria x ananassa HOM05D006000 ORTHO05D007749 0.0e+00 1268.4 662 95.8
FAN18G3028 Fragaria x ananassa HOM05D006000 ORTHO05D007749 0.0e+00 1244.6 645 95.8
FAN04G1552 Fragaria x ananassa HOM05D006000 ORTHO05D007749 0.0e+00 1217.2 658 92.7
RcHm_v2.0_Chr7g0191691 Rosa chinensis HOM05D006000 ORTHO05D007749 0.0e+00 1179.5 646 90.4
Prupe.5G160400 Prunus persica HOM05D006000 ORTHO05D007749 2.6e-302 1041.6 648 77.9
MD14G1166100 Malus domestica HOM05D006000 ORTHO05D007749 2.9e-301 1038.1 650 78.8
MD06G1160100 Malus domestica HOM05D006000 ORTHO05D007749 6.0e-299 1030.4 651 78.5
Cfa018908 Carpinus fangiana HOM05D006000 ORTHO05D007749 1.4e-274 949.5 649 72.4
QL10p005632 Quercus lobata HOM05D006000 ORTHO05D007749 1.3e-272 943.0 650 71.7
Haze_07292 Corylus avellana HOM05D006000 ORTHO05D007749 3.8e-269 931.4 678 69.3
CANSAT80G1864 Cannabis sativa HOM05D006000 ORTHO05D007749 2.5e-268 928.7 646 70.1
Gohir.A03G063200 Gossypium hirsutum HOM05D006000 ORTHO05D007749 3.5e-262 908.3 652 67.8
Gorai.003G108600 Gossypium raimondii HOM05D006000 ORTHO05D007749 1.3e-261 906.4 653 68.1
THA.LOC104818202 Tarenaya hassleriana HOM05D006000 ORTHO05D007749 2.9e-261 905.2 649 68.6
GSVIVG01007577001 Vitis vinifera HOM05D006000 ORTHO05D007749 1.9e-260 902.5 655 68.2
ClCG03G003330 Citrullus lanatus HOM05D006000 ORTHO05D007749 5.7e-257 891.0 655 67.2
Thhalv10010185m.g Eutrema salsugineum HOM05D006000 ORTHO05D007749 5.7e-257 891.0 653 66.8
TWI39G0152 Tripterygium wilfordii HOM05D006000 ORTHO05D007749 4.8e-256 887.9 651 66.8
AT3G48380 Arabidopsis thaliana HOM05D006000 ORTHO05D007749 3.1e-255 885.2 649 67.0
Ciclev10024180m.g Citrus clementina HOM05D006000 ORTHO05D007749 7.7e-254 880.6 649 67.3
BcaC07g39322 Brassica carinata HOM05D006000 ORTHO05D007749 1.5e-252 876.3 650 65.4
Carub.0005s1454 Capsella rubella HOM05D006000 ORTHO05D007749 1.9e-252 875.9 649 66.6
Manes.06G113400 Manihot esculenta HOM05D006000 ORTHO05D007749 1.9e-252 875.9 651 66.7
Sed0018918 Sechium edule HOM05D006000 ORTHO05D007749 2.5e-252 875.5 652 66.0
AL5G27780 Arabidopsis lyrata HOM05D006000 ORTHO05D007749 4.2e-252 874.8 649 66.4
Sp5g13670 Schrenkiella parvula HOM05D006000 ORTHO05D007749 5.5e-252 874.4 650 66.2
C08p23370 Brassica napus HOM05D006000 ORTHO05D007749 3.6e-251 871.7 651 65.3
TAR622G0802 Trochodendron aralioides HOM05D006000 ORTHO05D007749 1.8e-250 869.4 650 66.0
BcaB01g00818 Brassica carinata HOM05D006000 ORTHO05D007749 2.3e-250 869.0 651 65.9
Eucgr.B00167 Eucalyptus grandis HOM05D006000 ORTHO05D007749 2.3e-250 869.0 654 65.4
CARHR157150 Cardamine hirsuta HOM05D006000 ORTHO05D007749 3.0e-250 868.6 649 65.9
A06p19300 Brassica napus HOM05D006000 ORTHO05D007749 5.2e-250 867.8 651 64.7
Aa31LG4G16970 Aethionema arabicum HOM05D006000 ORTHO05D007749 1.2e-249 866.7 649 65.8
CSS0006429 Camellia sinensis var. sinensis HOM05D006000 ORTHO05D007749 3.4e-249 865.1 657 66.1
BolC8t49966H Brassica oleracea HOM05D006000 ORTHO05D007749 6.3e-248 860.9 662 64.0
CSS0019701 Camellia sinensis var. sinensis HOM05D006000 ORTHO05D007749 1.4e-247 859.8 657 65.6
Thecc.03G120400 Theobroma cacao HOM05D006000 ORTHO05D007749 4.1e-247 858.2 649 65.0
Lj9C473G6 Lonicera japonica HOM05D006000 ORTHO05D007749 4.5e-246 854.7 648 66.0
Hund05620 Selenicereus undatus HOM05D006000 ORTHO05D007749 5.9e-246 854.4 650 64.0
Phvul.009G170100 Phaseolus vulgaris HOM05D006000 ORTHO05D007749 1.7e-245 852.8 641 66.0
BraA06t25013Z Brassica rapa HOM05D006000 ORTHO05D007749 2.2e-245 852.4 662 63.3
CsaV3_1G009140 Cucumis sativus L. HOM05D006000 ORTHO05D007749 2.2e-245 852.4 650 64.3
Glyma.04G191400 Glycine max HOM05D006000 ORTHO05D007749 5.5e-244 847.8 640 65.8
Gohir.D03G103100 Gossypium hirsutum HOM05D006000 ORTHO05D007749 7.2e-244 847.4 619 67.2
VMungo1309G2614 Vigna mungo HOM05D006000 ORTHO05D007749 3.6e-243 845.1 640 65.6
Psat5g139520 Pisum sativum HOM05D006000 ORTHO05D007749 6.1e-243 844.3 647 64.3
Glyma.06G174400 Glycine max HOM05D006000 ORTHO05D007749 1.4e-242 843.2 641 65.4
Medtr3g075250 Medicago truncatula HOM05D006000 ORTHO05D007749 6.8e-242 840.9 641 66.1
arahy.Tifrunner.gnm1.ann1.1AQ6ST Arachis hypogaea HOM05D006000 ORTHO05D007749 8.8e-242 840.5 626 68.1
arahy.Tifrunner.gnm1.ann1.9XY5HM Arachis hypogaea HOM05D006000 ORTHO05D007749 2.0e-241 839.3 625 67.8
Ca_16102_v3 Cicer arietinum L. HOM05D006000 ORTHO05D007749 5.7e-241 837.8 634 65.5
Ca_30078_v3 Cicer arietinum L. HOM05D006000 ORTHO05D007749 5.7e-241 837.8 634 65.5
Lalb_Chr11g0069771 Lupinus albus HOM05D006000 ORTHO05D007749 1.8e-239 832.8 625 65.8
MELO3C002321.2 Cucumis melo HOM05D006000 ORTHO05D007749 9.1e-239 830.5 658 63.4
Lj1g0007517 Lotus japonicus HOM05D006000 ORTHO05D007749 7.7e-238 827.4 640 65.2
CiPaw.12G034200 Carya illinoinensis HOM05D006000 ORTHO05D007749 1.3e-237 826.6 538 74.2
Sc10g0010320 Simmondsia chinensis HOM05D006000 ORTHO05D007749 1.5e-236 823.2 654 63.1
PGR083G2177 Punica granatum HOM05D006000 ORTHO05D007749 4.7e-235 818.1 656 62.8
vmacro16696 Vaccinium macrocarpon HOM05D006000 ORTHO05D007749 8.0e-235 817.4 654 62.7
Sabra15G0111200 Salix brachista HOM05D006000 ORTHO05D007749 8.9e-234 813.9 615 66.8
PSO782G4995 Papaver somniferum HOM05D006000 ORTHO05D007749 1.5e-233 813.1 652 60.4
Nitab4.5_0001360g0160 Nicotiana tabacum HOM05D006000 ORTHO05D007749 3.4e-233 812.0 644 62.9
EL10Ac7g18048 Beta vulgaris HOM05D006000 ORTHO05D007749 4.4e-233 811.6 644 62.1
PGSC0003DMG400015231 Solanum tuberosum HOM05D006000 ORTHO05D007749 7.5e-233 810.8 657 61.6
AUR62001257 Chenopodium quinoa HOM05D006000 ORTHO05D007749 1.3e-232 810.1 646 62.5
Oeu053502.2 Olea europaea HOM05D006000 ORTHO05D007749 2.2e-232 809.3 655 62.7
Migut.D02037 Erythranthe guttata HOM05D006000 ORTHO05D007749 3.2e-231 805.4 652 62.7
Lsat_1_v5_gn_5_13060 Lactuca sativa HOM05D006000 ORTHO05D007749 1.6e-230 803.1 648 61.4
Nitab4.5_0006717g0030 Nicotiana tabacum HOM05D006000 ORTHO05D007749 7.8e-230 800.8 646 62.5
Sopen03g030780 Solanum pennellii HOM05D006000 ORTHO05D007749 8.6e-229 797.3 631 62.8
Solyc03g111660.3 Solanum lycopersicum HOM05D006000 ORTHO05D007749 1.5e-228 796.6 634 62.9
CAN.G472.50 Capsicum annuum HOM05D006000 ORTHO05D007749 2.5e-228 795.8 646 62.2
HanXRQChr05g0156141 Helianthus annuus HOM05D006000 ORTHO05D007749 3.3e-228 795.4 653 62.2
ECA246G4586 Erigeron canadensis HOM05D006000 ORTHO05D007749 6.8e-226 787.7 650 61.2
Peaxi162Scf00089g00935 Petunia axillaris HOM05D006000 ORTHO05D007749 8.9e-226 787.3 634 62.8
MSTRG.4336 Avicennia marina HOM05D006000 ORTHO05D007749 2.0e-225 786.2 655 60.8
Rhsim12G0171000 Rhododendron simsii HOM05D006000 ORTHO05D007749 2.4e-223 779.2 613 63.3
TPR.G38611 Trifolium pratense HOM05D006000 ORTHO05D007749 1.7e-221 773.1 664 60.1
Cc04_g10700 Coffea canephora HOM05D006000 ORTHO05D007749 2.1e-219 766.1 661 58.5
HPP92_027096 Vanilla planifolia HOM05D006000 ORTHO05D007749 2.5e-212 742.7 653 56.2
CDE09G0792 Ceratophyllum demersum HOM05D006000 ORTHO05D007749 1.8e-210 736.5 661 55.8
Ah.15g095430 Amaranthus hybridus HOM05D006000 ORTHO05D007749 4.0e-210 735.3 641 58.3
ATR0824G112 Amborella trichopoda HOM05D006000 ORTHO05D007749 3.4e-201 705.7 652 55.8
Os12g0285500 Oryza sativa ssp. japonica HOM05D006000 ORTHO05D007749 8.4e-200 701.0 642 56.9
Nn4g22511 Nelumbo nucifera HOM05D006000 ORTHO05D007749 5.6e-196 688.3 577 59.6
Atru.chr9.985 Acer truncatum HOM05D006000 ORTHO05D007749 1.3e-187 660.6 504 65.5
Zm00001eb133430 Zea mays HOM05D006000 ORTHO05D007749 6.7e-181 638.3 680 51.9
HPP92_021434 Vanilla planifolia HOM05D006000 ORTHO05D007749 5.6e-180 635.2 586 54.1
Dinv11120 Davidia involucrata HOM05D006000 ORTHO05D007749 1.4e-178 630.6 498 63.5
Actinidia08849 Actinidia chinensis HOM05D006000 ORTHO05D007749 4.3e-172 609.0 618 54.0
Actinidia36773 Actinidia chinensis HOM05D006000 ORTHO05D007749 1.2e-166 590.9 574 54.9
SGA_v2.0_scaffold7G04178 Striga asiatica HOM05D006000 ORTHO05D007749 4.5e-161 572.4 665 47.8
Potri.015G088200 Populus trichocarpa HOM05D006000 ORTHO05D007749 3.2e-151 539.7 470 60.0
Dinv12561 Davidia involucrata HOM05D006000 ORTHO05D007749 3.6e-150 536.2 589 50.3
Mapoly0004s0201 Marchantia polymorpha HOM05D006000 ORTHO05D007749 1.3e-144 517.7 630 43.7
FvH4_5g06921 Fragaria vesca HOM05D006000 ORTHO05D007749 6.1e-142 508.8 284 91.2
SMO201G0062 Selaginella moellendorffii HOM05D006000 ORTHO05D007749 3.8e-136 489.6 633 43.3
Pp3c6_16550 Physcomitrium patens HOM05D006000 ORTHO05D007749 5.5e-135 485.7 631 44.7
DCAR_016428 Daucus carota HOM05D006000 ORTHO05D007749 7.5e-124 448.7 254 84.3
SalBow8G1380 Salvia bowleyana HOM05D006000 ORTHO05D007749 2.8e-123 446.8 552 46.6
CBR_g41805 Chara braunii HOM05D006000 ORTHO05D007749 9.5e-111 405.2 390 50.8
Cpa.g.sc4.40 Carica papaya HOM05D006000 ORTHO05D007749 1.1e-103 381.7 358 53.4
FvH4_5g06950 Fragaria vesca HOM05D006000 ORTHO05D007749 1.2e-102 378.3 232 84.9
unitig_21.g20436 Utricularia gibba HOM05D006000 ORTHO05D007749 7.1e-98 362.5 477 44.2
AagrBONN_evm.TU.Sc2ySwM_362.2604 Anthoceros agrestis HOM05D006000 ORTHO05D007749 4.6e-97 359.8 632 39.1
arahy.Tifrunner.gnm1.ann1.HVEI7F Arachis hypogaea HOM05D006000 ORTHO05D007749 4.3e-95 353.2 296 62.2
DCAR_016429 Daucus carota HOM05D006000 ORTHO05D007749 1.8e-93 347.8 427 43.3
Cre03.g197900 Chlamydomonas reinhardtii HOM05D006000 ORTHO05D007749 8.9e-93 345.5 344 51.2
unitig_21.g20435 Utricularia gibba HOM05D006000 ORTHO05D007749 3.8e-91 340.1 178 86.0
HPP92_021417 Vanilla planifolia HOM05D006000 ORTHO05D007749 2.5e-79 300.8 197 72.1
Cpa.g.sc4.27 Carica papaya HOM05D006000 ORTHO05D008793 1.3e-54 218.8 170 64.1
SalBow8G5300 Salvia bowleyana HOM05D006000 ORTHO05D007749 1.2e-52 212.2 103 92.2
Cpa.g.sc4.41 Carica papaya HOM05D006000 ORTHO05D007749 1.3e-51 208.8 106 85.8
arahy.Tifrunner.gnm1.ann1.1X7LEL Arachis hypogaea HOM05D000074 ORTHO05D007749 4.6e-41 173.7 495 30.7
FvH4_5g06930 Fragaria vesca HOM05D006000 ORTHO05D007749 1.1e-37 162.5 137 62.8
PRCOL_00005175 Prasinoderma coloniale HOM05D006000 ORTHO05D007749 3.8e-35 154.1 200 42.0
FvH4_5g06922 Fragaria vesca HOM05D006000 ORTHO05D007749 2.5e-34 151.4 100 77.0
SMO201G0174 Selaginella moellendorffii HOM05D006000 ORTHO05D007749 3.6e-33 147.5 189 43.4
TAR622G0554 Trochodendron aralioides HOM05D006000 ORTHO05D007749 2.2e-30 138.3 151 49.7
CAN.G546.38 Capsicum annuum HOM05D006000 ORTHO05D007749 2.9e-27 127.9 86 70.9
SGA_v2.0_scaffold115G32113 Striga asiatica HOM05D005956 ORTHO05D007197 2.1e-25 121.7 58 87.9
SMO328G0007 Selaginella moellendorffii HOM05D006000 ORTHO05D007749 1.5e-23 115.5 83 63.9
Nitab4.5_0001094g0140 Nicotiana tabacum HOM05D006000 ORTHO05D007749 1.1e-21 109.4 102 52.0
arahy.Tifrunner.gnm1.ann1.0Z5YS0 Arachis hypogaea HOM05D001248 ORTHO05D007749 2.1e-17 95.1 72 61.1
Lsat_1_v5_gn_4_166800 Lactuca sativa HOM05D006000 ORTHO05D018009 6.8e-16 90.1 75 61.3
Lsat_1_v5_gn_3_61521 Lactuca sativa HOM05D006000 ORTHO05D018009 1.2e-15 89.4 74 62.2
Lsat_1_v5_gn_4_154121 Lactuca sativa HOM05D006000 ORTHO05D018009 1.5e-15 89.0 74 60.8
Lsat_1_v5_gn_2_53660 Lactuca sativa HOM05D003480 ORTHO05D018009 5.7e-15 87.0 74 60.8
Lsat_1_v5_gn_4_114361 Lactuca sativa HOM05D003480 ORTHO05D018009 7.5e-15 86.7 74 59.5
Lsat_1_v5_gn_6_19961 Lactuca sativa HOM05D003480 ORTHO05D018009 4.8e-14 84.0 74 59.5
CAN.G1014.24 Capsicum annuum HOM05D000846 ORTHO05D028464 2.5e-10 71.6 91 45.1
CAN.G755.4 Capsicum annuum HOM05D006000 ORTHO05D028464 7.2e-10 70.1 73 49.3
arahy.Tifrunner.gnm1.ann1.XFG60B Arachis hypogaea HOM05D006000 ORTHO05D007749 6.8e-08 63.5 92 43.5
arahy.Tifrunner.gnm1.ann1.L5KNWH Arachis hypogaea HOM05D006000 ORTHO05D007749 4.4e-07 60.8 88 43.2
BcaB01g00966 Brassica carinata HOM05D006000 ORTHO05D007749 4.4e-07 60.8 155 33.5
Lsat_1_v5_gn_5_95420 Lactuca sativa HOM05D004927 ORTHO05D005798 2.8e-06 58.2 82 37.8


User provided reference genes

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