Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_5g06921 Fragaria vesca HOM05D006000 ORTHO05D007749 7.1e-167 590.5 294 100.0
FAN08G3509 Fragaria x ananassa HOM05D006000 ORTHO05D007749 2.0e-145 519.2 284 92.6
FvH4_5g06990 Fragaria vesca HOM05D006000 ORTHO05D007749 6.1e-142 507.7 284 91.2
FAN18G3028 Fragaria x ananassa HOM05D006000 ORTHO05D007749 8.8e-141 503.8 271 93.7
FAN04G1552 Fragaria x ananassa HOM05D006000 ORTHO05D007749 2.0e-124 449.5 284 84.2
RcHm_v2.0_Chr7g0191691 Rosa chinensis HOM05D006000 ORTHO05D007749 2.4e-122 442.6 269 84.4
FvH4_5g06950 Fragaria vesca HOM05D006000 ORTHO05D007749 6.6e-104 381.3 225 86.2
Prupe.5G160400 Prunus persica HOM05D006000 ORTHO05D007749 6.4e-99 364.8 268 69.0
MD14G1166100 Malus domestica HOM05D006000 ORTHO05D007749 6.6e-96 354.8 275 65.8
MD06G1160100 Malus domestica HOM05D006000 ORTHO05D007749 2.2e-91 339.7 276 64.5
Cfa018908 Carpinus fangiana HOM05D006000 ORTHO05D007749 5.1e-80 302.0 271 57.6
Atru.chr9.985 Acer truncatum HOM05D006000 ORTHO05D007749 8.1e-78 294.7 274 56.2
Haze_07292 Corylus avellana HOM05D006000 ORTHO05D007749 2.2e-75 286.6 300 52.3
Gohir.A03G063200 Gossypium hirsutum HOM05D006000 ORTHO05D007749 9.2e-74 281.2 267 52.4
CANSAT80G1864 Cannabis sativa HOM05D006000 ORTHO05D007749 3.5e-73 279.3 281 51.2
Gohir.D03G103100 Gossypium hirsutum HOM05D006000 ORTHO05D007749 4.6e-73 278.9 267 52.4
THA.LOC104818202 Tarenaya hassleriana HOM05D006000 ORTHO05D007749 1.7e-72 276.9 276 51.4
Gorai.003G108600 Gossypium raimondii HOM05D006000 ORTHO05D007749 8.6e-72 274.6 267 51.7
Thecc.03G120400 Theobroma cacao HOM05D006000 ORTHO05D007749 3.6e-70 269.2 271 49.8
QL10p005632 Quercus lobata HOM05D006000 ORTHO05D007749 2.4e-69 266.5 273 50.2
Cpa.g.sc4.40 Carica papaya HOM05D006000 ORTHO05D007749 1.4e-66 257.3 270 47.4
Thhalv10010185m.g Eutrema salsugineum HOM05D006000 ORTHO05D007749 1.4e-66 257.3 270 47.4
Potri.015G088200 Populus trichocarpa HOM05D006000 ORTHO05D007749 3.2e-66 256.1 277 48.7
Carub.0005s1454 Capsella rubella HOM05D006000 ORTHO05D007749 1.6e-65 253.8 270 48.1
TAR622G0802 Trochodendron aralioides HOM05D006000 ORTHO05D007749 4.6e-65 252.3 270 48.9
GSVIVG01007577001 Vitis vinifera HOM05D006000 ORTHO05D007749 7.8e-65 251.5 264 49.6
CARHR157150 Cardamine hirsuta HOM05D006000 ORTHO05D007749 1.0e-64 251.1 270 47.0
AL5G27780 Arabidopsis lyrata HOM05D006000 ORTHO05D007749 1.7e-64 250.4 270 48.1
AT3G48380 Arabidopsis thaliana HOM05D006000 ORTHO05D007749 3.0e-64 249.6 270 48.1
ClCG03G003330 Citrullus lanatus HOM05D006000 ORTHO05D007749 3.9e-64 249.2 276 46.7
Eucgr.B00167 Eucalyptus grandis HOM05D006000 ORTHO05D007749 3.9e-64 249.2 275 48.4
Sed0018918 Sechium edule HOM05D006000 ORTHO05D007749 5.1e-64 248.8 276 45.7
Sabra15G0111200 Salix brachista HOM05D006000 ORTHO05D007749 3.3e-63 246.1 272 47.8
BcaC07g39322 Brassica carinata HOM05D006000 ORTHO05D007749 4.3e-63 245.7 277 45.5
BcaB01g00818 Brassica carinata HOM05D006000 ORTHO05D007749 9.6e-63 244.6 278 47.1
Ciclev10024180m.g Citrus clementina HOM05D006000 ORTHO05D007749 9.6e-63 244.6 277 48.4
TWI39G0152 Tripterygium wilfordii HOM05D006000 ORTHO05D007749 9.6e-63 244.6 276 45.7
DCAR_016429 Daucus carota HOM05D006000 ORTHO05D007749 1.3e-62 244.2 271 44.6
Sp5g13670 Schrenkiella parvula HOM05D006000 ORTHO05D007749 1.3e-62 244.2 277 45.8
Actinidia36773 Actinidia chinensis HOM05D006000 ORTHO05D007749 1.6e-62 243.8 272 46.3
Hund05620 Selenicereus undatus HOM05D006000 ORTHO05D007749 4.8e-62 242.3 273 45.1
Aa31LG4G16970 Aethionema arabicum HOM05D006000 ORTHO05D007749 6.2e-62 241.9 276 46.4
A06p19300 Brassica napus HOM05D006000 ORTHO05D007749 6.2e-62 241.9 278 44.6
C08p23370 Brassica napus HOM05D006000 ORTHO05D007749 1.1e-61 241.1 278 45.3
BolC8t49966H Brassica oleracea HOM05D006000 ORTHO05D007749 1.1e-61 241.1 278 45.3
BraA06t25013Z Brassica rapa HOM05D006000 ORTHO05D007749 1.1e-61 241.1 278 44.2
Lj9C473G6 Lonicera japonica HOM05D006000 ORTHO05D007749 5.8e-60 235.3 258 48.1
Manes.06G113400 Manihot esculenta HOM05D006000 ORTHO05D007749 9.9e-60 234.6 276 46.7
Sc10g0010320 Simmondsia chinensis HOM05D006000 ORTHO05D007749 1.4e-58 230.7 275 45.8
CSS0006429 Camellia sinensis var. sinensis HOM05D006000 ORTHO05D007749 7.1e-58 228.4 271 44.6
CSS0019701 Camellia sinensis var. sinensis HOM05D006000 ORTHO05D007749 1.6e-57 227.3 271 44.3
AUR62001257 Chenopodium quinoa HOM05D006000 ORTHO05D007749 1.6e-57 227.3 263 44.1
VMungo1309G2614 Vigna mungo HOM05D006000 ORTHO05D007749 4.6e-57 225.7 267 47.9
Nn4g22511 Nelumbo nucifera HOM05D006000 ORTHO05D007749 1.0e-56 224.6 257 44.7
Lj1g0007517 Lotus japonicus HOM05D006000 ORTHO05D007749 1.3e-56 224.2 271 47.2
Phvul.009G170100 Phaseolus vulgaris HOM05D006000 ORTHO05D007749 6.7e-56 221.9 268 47.0
Psat5g139520 Pisum sativum HOM05D006000 ORTHO05D007749 6.7e-56 221.9 263 44.5
Ah.15g095430 Amaranthus hybridus HOM05D006000 ORTHO05D007749 8.7e-56 221.5 273 42.5
MELO3C002321.2 Cucumis melo HOM05D006000 ORTHO05D007749 8.7e-56 221.5 266 42.9
PSO782G4995 Papaver somniferum HOM05D006000 ORTHO05D007749 1.5e-55 220.7 268 41.8
Medtr3g075250 Medicago truncatula HOM05D006000 ORTHO05D007749 2.5e-55 219.9 261 47.9
CsaV3_1G009140 Cucumis sativus L. HOM05D006000 ORTHO05D007749 1.6e-54 217.2 271 41.0
arahy.Tifrunner.gnm1.ann1.9XY5HM Arachis hypogaea HOM05D006000 ORTHO05D007749 2.1e-54 216.9 246 50.0
arahy.Tifrunner.gnm1.ann1.1AQ6ST Arachis hypogaea HOM05D006000 ORTHO05D007749 2.8e-54 216.5 247 50.6
Ca_16102_v3 Cicer arietinum L. HOM05D006000 ORTHO05D007749 8.1e-54 214.9 259 45.9
Ca_30078_v3 Cicer arietinum L. HOM05D006000 ORTHO05D007749 8.1e-54 214.9 259 45.9
vmacro16696 Vaccinium macrocarpon HOM05D006000 ORTHO05D007749 1.1e-53 214.5 274 42.7
Lsat_1_v5_gn_5_13060 Lactuca sativa HOM05D006000 ORTHO05D007749 4.0e-53 212.6 264 40.9
Glyma.04G191400 Glycine max HOM05D006000 ORTHO05D007749 9.0e-53 211.5 272 44.9
Dinv11120 Davidia involucrata HOM05D006000 ORTHO05D007749 1.2e-52 211.1 205 49.8
Glyma.06G174400 Glycine max HOM05D006000 ORTHO05D007749 1.5e-52 210.7 268 45.5
PGR083G2177 Punica granatum HOM05D006000 ORTHO05D007749 9.9e-52 208.0 277 43.0
Oeu053502.2 Olea europaea HOM05D006000 ORTHO05D007749 1.3e-51 207.6 279 41.2
Migut.D02037 Erythranthe guttata HOM05D006000 ORTHO05D007749 1.7e-51 207.2 264 42.4
Lalb_Chr11g0069771 Lupinus albus HOM05D006000 ORTHO05D007749 1.7e-51 207.2 267 42.7
PGSC0003DMG400015231 Solanum tuberosum HOM05D006000 ORTHO05D007749 4.2e-50 202.6 268 42.2
HanXRQChr05g0156141 Helianthus annuus HOM05D006000 ORTHO05D007749 1.8e-48 197.2 278 40.3
EL10Ac7g18048 Beta vulgaris HOM05D006000 ORTHO05D007749 3.0e-48 196.4 259 38.2
Nitab4.5_0001360g0160 Nicotiana tabacum HOM05D006000 ORTHO05D007749 6.7e-48 195.3 268 40.7
SGA_v2.0_scaffold7G04178 Striga asiatica HOM05D006000 ORTHO05D007749 6.7e-48 195.3 278 40.6
Solyc03g111660.3 Solanum lycopersicum HOM05D006000 ORTHO05D007749 1.1e-47 194.5 260 41.2
MSTRG.4336 Avicennia marina HOM05D006000 ORTHO05D007749 1.9e-47 193.7 268 40.7
CAN.G472.50 Capsicum annuum HOM05D006000 ORTHO05D007749 3.3e-47 193.0 268 41.4
Dinv12561 Davidia involucrata HOM05D006000 ORTHO05D007749 3.3e-47 193.0 212 45.8
Peaxi162Scf00089g00935 Petunia axillaris HOM05D006000 ORTHO05D007749 9.6e-47 191.4 268 42.2
Sopen03g030780 Solanum pennellii HOM05D006000 ORTHO05D007749 9.6e-47 191.4 255 41.2
ECA246G4586 Erigeron canadensis HOM05D006000 ORTHO05D007749 3.7e-46 189.5 269 39.0
Nitab4.5_0006717g0030 Nicotiana tabacum HOM05D006000 ORTHO05D007749 4.8e-46 189.1 268 41.0
CDE09G0792 Ceratophyllum demersum HOM05D006000 ORTHO05D007749 1.8e-45 187.2 269 37.9
HPP92_027096 Vanilla planifolia HOM05D006000 ORTHO05D007749 4.0e-45 186.0 269 40.1
Cc04_g10700 Coffea canephora HOM05D006000 ORTHO05D007749 1.3e-43 181.0 271 37.6
CiPaw.12G034200 Carya illinoinensis HOM05D006000 ORTHO05D007749 1.9e-42 177.2 158 54.4
SalBow8G1380 Salvia bowleyana HOM05D006000 ORTHO05D007749 1.6e-41 174.1 269 37.5
Rhsim12G0171000 Rhododendron simsii HOM05D006000 ORTHO05D007749 6.0e-41 172.2 233 39.1
unitig_21.g20436 Utricularia gibba HOM05D006000 ORTHO05D007749 1.4e-37 161.0 254 38.2
ATR0824G112 Amborella trichopoda HOM05D006000 ORTHO05D007749 4.1e-37 159.5 258 38.8
Os12g0285500 Oryza sativa ssp. japonica HOM05D006000 ORTHO05D007749 3.8e-35 152.9 252 38.5
TPR.G38611 Trifolium pratense HOM05D006000 ORTHO05D007749 3.8e-35 152.9 284 36.6
Zm00001eb133430 Zea mays HOM05D006000 ORTHO05D007749 8.7e-32 141.7 263 35.7
HPP92_021434 Vanilla planifolia HOM05D006000 ORTHO05D007749 3.4e-20 103.2 147 36.7
arahy.Tifrunner.gnm1.ann1.1X7LEL Arachis hypogaea HOM05D000074 ORTHO05D007749 1.6e-17 94.4 157 42.0
Pp3c6_16550 Physcomitrium patens HOM05D006000 ORTHO05D007749 9.1e-13 78.6 186 30.1
Mapoly0004s0201 Marchantia polymorpha HOM05D006000 ORTHO05D007749 2.6e-12 77.0 206 26.7
SMO201G0062 Selaginella moellendorffii HOM05D006000 ORTHO05D007749 2.2e-11 73.9 264 26.1
AagrBONN_evm.TU.Sc2ySwM_362.2604 Anthoceros agrestis HOM05D006000 ORTHO05D007749 1.9e-10 70.9 230 27.4
Actinidia08849 Actinidia chinensis HOM05D006000 ORTHO05D007749 3.6e-09 66.6 225 28.9
Lsat_1_v5_gn_5_95420 Lactuca sativa HOM05D004927 ORTHO05D005798 2.3e-08 63.9 82 40.2
BcaB01g00966 Brassica carinata HOM05D006000 ORTHO05D007749 1.2e-07 61.6 155 36.8
arahy.Tifrunner.gnm1.ann1.XFG60B Arachis hypogaea HOM05D006000 ORTHO05D007749 9.7e-07 58.5 122 37.7
arahy.Tifrunner.gnm1.ann1.L5KNWH Arachis hypogaea HOM05D006000 ORTHO05D007749 3.7e-06 56.6 88 42.0


User provided reference genes

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