Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_5g06710 Fragaria vesca HOM05D007617 ORTHO05D007195 2.2e-64 248.8 125 100.0
FAN08G2040 Fragaria x ananassa HOM05D007617 ORTHO05D007195 2.4e-63 245.4 125 97.6
FAN18G3066 Fragaria x ananassa HOM05D007617 ORTHO05D007195 3.1e-63 245.0 125 98.4
FAN13G2538 Fragaria x ananassa HOM05D007617 ORTHO05D007195 1.4e-60 236.1 125 95.2
FAN04G0785 Fragaria x ananassa HOM05D007617 ORTHO05D007195 5.5e-60 234.2 125 96.0
RcHm_v2.0_Chr7g0191931 Rosa chinensis HOM05D007617 ORTHO05D007195 4.7e-51 204.5 129 82.9
MD06G1161600 Malus domestica HOM05D007617 ORTHO05D007195 3.8e-29 131.7 135 55.6
Prupe.5G161500 Prunus persica HOM05D007617 ORTHO05D007195 9.2e-23 110.5 137 48.9
MD02G1049300 Malus domestica HOM05D007617 ORTHO05D007195 3.5e-22 108.6 133 51.9
MD14G1167200 Malus domestica HOM05D007617 ORTHO05D007195 1.1e-20 103.6 123 48.0
vmacro18302 Vaccinium macrocarpon HOM05D007617 ORTHO05D007195 2.2e-16 89.4 134 48.5
QL10p005918 Quercus lobata HOM05D007617 ORTHO05D007195 6.4e-16 87.8 139 41.7
CAN.G1057.14 Capsicum annuum HOM05D007617 ORTHO05D007195 1.4e-15 86.7 134 47.0
CANSAT80G0013 Cannabis sativa HOM05D007617 ORTHO05D007195 4.1e-15 85.1 137 43.8
Ciclev10022896m.g Citrus clementina HOM05D007617 ORTHO05D007195 4.1e-15 85.1 130 44.6
Haze_07632 Corylus avellana HOM05D007617 ORTHO05D007195 7.0e-15 84.3 143 42.7
DCAR_011273 Daucus carota HOM05D007617 ORTHO05D007195 2.7e-14 82.4 135 48.1
TAR374G0075 Trochodendron aralioides HOM05D007617 ORTHO05D007195 4.6e-14 81.6 139 43.9
QL02p073546 Quercus lobata HOM05D007617 ORTHO05D007195 6.0e-14 81.3 132 40.9
Potri.012G090700 Populus trichocarpa HOM05D007617 ORTHO05D007195 7.8e-14 80.9 116 44.8
Solyc02g067910.1 Solanum lycopersicum HOM05D007617 ORTHO05D007195 3.9e-13 78.6 128 44.5
Phvul.004G059700 Phaseolus vulgaris HOM05D007617 ORTHO05D007195 5.1e-13 78.2 125 39.2
Hma1.2p1_0818F.1_g223400 Hydrangea macrophylla HOM05D007617 ORTHO05D007195 6.6e-13 77.8 137 44.5
Manes.14G057300 Manihot esculenta HOM05D007617 ORTHO05D007195 8.6e-13 77.4 137 39.4
Sopen02g038090 Solanum pennellii HOM05D007617 ORTHO05D007195 1.1e-12 77.0 66 66.7
Manes.06G112400 Manihot esculenta HOM05D007617 ORTHO05D007195 1.5e-12 76.6 142 43.7
PGR142G0897 Punica granatum HOM05D007617 ORTHO05D007195 1.5e-12 76.6 65 64.6
Aqoxy5G03650 Aquilegia oxysepala HOM05D007617 ORTHO05D007195 1.9e-12 76.3 105 50.5
Nitab4.5_0004496g0030 Nicotiana tabacum HOM05D007617 ORTHO05D007195 1.9e-12 76.3 139 41.0
CANSAT64G0294 Cannabis sativa HOM05D007617 ORTHO05D007195 2.5e-12 75.9 139 39.6
Sopen02g017030 Solanum pennellii HOM05D007617 ORTHO05D007195 4.3e-12 75.1 128 43.0
VMungo0464G0279 Vigna mungo HOM05D007617 ORTHO05D007195 5.6e-12 74.7 125 39.2
SGA_v2.0_scaffold47G17524 Striga asiatica HOM05D007617 ORTHO05D007195 7.3e-12 74.3 130 42.3
Thecc.03G118700 Theobroma cacao HOM05D011792 ORTHO05D007195 9.5e-12 73.9 146 39.7
Lsat_1_v5_gn_2_91001 Lactuca sativa HOM05D007617 ORTHO05D007195 1.6e-11 73.2 130 47.7
Glyma.05G114700 Glycine max HOM05D007617 ORTHO05D007195 2.1e-11 72.8 65 56.9
Glyma.19G053100 Glycine max HOM05D007617 ORTHO05D007195 2.1e-11 72.8 65 60.0
Prupe.3G296000 Prunus persica HOM05D007617 ORTHO05D007195 2.1e-11 72.8 65 61.5
Lsat_1_v5_gn_2_94241 Lactuca sativa HOM05D007617 ORTHO05D007195 2.8e-11 72.4 133 46.6
Nitab4.5_0014774g0010 Nicotiana tabacum HOM05D007617 ORTHO05D007195 4.7e-11 71.6 131 42.0
Nitab4.5_0000040g0620 Nicotiana tabacum HOM05D007617 ORTHO05D007195 6.2e-11 71.2 139 41.0
Oeu050454.1 Olea europaea HOM05D007617 ORTHO05D007195 8.1e-11 70.9 131 41.2
PGSC0003DMG400012616 Solanum tuberosum HOM05D007617 ORTHO05D007195 8.1e-11 70.9 66 62.1
ATR1145G009 Amborella trichopoda HOM05D007617 ORTHO05D007195 1.1e-10 70.5 133 41.4
Oeu023836.1 Olea europaea HOM05D007617 ORTHO05D007195 1.1e-10 70.5 162 40.1
Ciclev10017789m.g Citrus clementina HOM05D007617 ORTHO05D007195 1.8e-10 69.7 105 44.8
Lalb_Chr21g0317701 Lupinus albus HOM05D007617 ORTHO05D007195 1.8e-10 69.7 131 40.5
SGA_v2.0_scaffold30G12404 Striga asiatica HOM05D007617 ORTHO05D007195 1.8e-10 69.7 127 42.5
Atru.chr9.1807 Acer truncatum HOM05D007617 ORTHO05D007195 2.3e-10 69.3 138 43.5
BcaB01g00826 Brassica carinata HOM05D010525 ORTHO05D007195 2.3e-10 69.3 135 42.2
Atru.chr6.2453 Acer truncatum HOM05D007617 ORTHO05D007195 3.1e-10 68.9 101 46.5
BcaC07g39315 Brassica carinata HOM05D010525 ORTHO05D007195 5.2e-10 68.2 136 39.7
C08p23300 Brassica napus HOM05D010525 ORTHO05D007195 5.2e-10 68.2 136 39.7
BolC8t49961H Brassica oleracea HOM05D010525 ORTHO05D007195 5.2e-10 68.2 136 39.7
Lalb_Chr02g0158101 Lupinus albus HOM05D007617 ORTHO05D007195 5.2e-10 68.2 66 60.6
EL10As2g23175 Beta vulgaris HOM05D007617 ORTHO05D007195 6.8e-10 67.8 124 41.9
TPR.G31739 Trifolium pratense HOM05D007617 ORTHO05D007195 6.8e-10 67.8 131 40.5
CiPaw.11G014400 Carya illinoinensis HOM05D007617 ORTHO05D007195 8.9e-10 67.4 142 38.0
Medtr1g093790 Medicago truncatula HOM05D007617 ORTHO05D007195 1.2e-09 67.0 132 40.9
PGSC0003DMG400006919 Solanum tuberosum HOM05D007617 ORTHO05D007195 1.2e-09 67.0 129 38.8
Sp5g13710 Schrenkiella parvula HOM05D010525 ORTHO05D007195 1.5e-09 66.6 139 43.2
Oeu054643.1 Olea europaea HOM05D007617 ORTHO05D007195 3.4e-09 65.5 132 38.6
AL5G27740 Arabidopsis lyrata HOM05D010525 ORTHO05D007195 4.4e-09 65.1 135 39.3
Psat6g179560 Pisum sativum HOM05D007617 ORTHO05D007195 4.4e-09 65.1 67 58.2
CiPaw.03G047400 Carya illinoinensis HOM05D007617 ORTHO05D007195 5.8e-09 64.7 65 56.9
CiPaw.09G026700 Carya illinoinensis HOM05D007617 ORTHO05D007195 5.8e-09 64.7 65 56.9
Thhalv10010898m.g Eutrema salsugineum HOM05D010525 ORTHO05D007195 5.8e-09 64.7 139 38.1
Sc04g0009720 Simmondsia chinensis HOM05D007617 ORTHO05D007195 5.8e-09 64.7 73 60.3
Migut.K00629 Erythranthe guttata HOM05D007617 ORTHO05D007195 7.5e-09 64.3 110 43.6
TAR371G0337 Trochodendron aralioides HOM05D007617 ORTHO05D007195 7.5e-09 64.3 136 39.0
A06p19360 Brassica napus HOM05D010525 ORTHO05D007195 3.7e-08 62.0 130 40.8
Gohir.D12G189700 Gossypium hirsutum HOM05D011792 ORTHO05D007195 3.7e-08 62.0 145 35.9
Ca_11155_v3 Cicer arietinum L. HOM05D007617 ORTHO05D007195 4.9e-08 61.6 130 36.9
Ca_11158_v3 Cicer arietinum L. HOM05D007617 ORTHO05D007195 4.9e-08 61.6 130 36.9
Lj2g0010313 Lotus japonicus HOM05D007617 ORTHO05D007195 4.9e-08 61.6 68 58.8
Os03g0670000 Oryza sativa ssp. japonica HOM05D007617 ORTHO05D007195 4.9e-08 61.6 110 41.8
Rhsim08G0047600 Rhododendron simsii HOM05D007617 ORTHO05D007195 4.9e-08 61.6 131 39.7
Cfa007314 Carpinus fangiana HOM05D000615 ORTHO05D007195 1.1e-07 60.5 135 39.3
MSTRG.549 Avicennia marina HOM05D007617 ORTHO05D007195 1.4e-07 60.1 70 54.3
Nn3g16639 Nelumbo nucifera HOM05D007617 ORTHO05D007195 1.4e-07 60.1 141 40.4
Cc07_g00130 Coffea canephora HOM05D007617 ORTHO05D007195 2.4e-07 59.3 68 60.3
BraA06t25018Z Brassica rapa HOM05D010525 ORTHO05D007195 3.2e-07 58.9 130 40.0
Duzib205G1108 Durio zibethinus HOM05D011792 ORTHO05D007195 3.2e-07 58.9 147 36.1
TWI39G0914 Tripterygium wilfordii HOM05D007617 ORTHO05D007195 3.2e-07 58.9 131 36.6
Aa31LG1G18820 Aethionema arabicum HOM05D010525 ORTHO05D007195 4.1e-07 58.5 146 39.7
ClCG05G013140 Citrullus lanatus HOM05D007617 ORTHO05D007195 4.1e-07 58.5 52 55.8
Carub.0008s2391 Capsella rubella HOM05D010525 ORTHO05D007195 7.1e-07 57.8 68 54.4
Dinv33408 Davidia involucrata HOM05D007617 ORTHO05D007195 1.2e-06 57.0 101 41.6
Zm00001eb306910 Zea mays HOM05D007617 ORTHO05D007195 1.2e-06 57.0 60 61.7
Sed0018064 Sechium edule HOM05D007617 ORTHO05D007195 1.6e-06 56.6 64 54.7
THA.LOC109117150 Tarenaya hassleriana HOM05D007617 ORTHO05D007195 2.7e-06 55.8 137 39.4
AL8G40240 Arabidopsis lyrata HOM05D010525 ORTHO05D007195 4.6e-06 55.1 68 52.9
Potri.001G340100 Populus trichocarpa HOM05D007617 ORTHO05D007195 6.0e-06 54.7 112 42.9
Sed0015223 Sechium edule HOM05D007617 ORTHO05D007195 6.0e-06 54.7 64 53.1
Hund06047 Selenicereus undatus HOM05D007617 ORTHO05D007195 7.8e-06 54.3 55 56.4


User provided reference genes

Program Settings