Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_5g05820 Fragaria vesca HOM05D004617 ORTHO05D005531 4.1e-165 584.7 311 100.0
FAN08G0972 Fragaria x ananassa HOM05D004617 ORTHO05D005531 4.3e-146 521.5 311 91.3
FAN05G0977 Fragaria x ananassa HOM05D004617 ORTHO05D005531 5.1e-139 498.0 308 86.4
FvH4_6g24101 Fragaria vesca HOM05D004617 ORTHO05D005531 2.0e-135 486.1 308 85.7
RcHm_v2.0_Chr7g0193001 Rosa chinensis HOM05D004617 ORTHO05D005531 4.8e-129 464.9 312 79.2
FAN13G0632 Fragaria x ananassa HOM05D004617 ORTHO05D005531 1.6e-124 449.9 255 93.3
FAN18G1615 Fragaria x ananassa HOM05D004617 ORTHO05D005531 1.0e-118 430.6 238 97.1
MD06G1170100 Malus domestica HOM05D004617 ORTHO05D005531 5.1e-99 365.2 312 65.7
MD14G1175700 Malus domestica HOM05D004617 ORTHO05D005531 1.2e-95 354.0 312 63.5
Prupe.5G169600 Prunus persica HOM05D004617 ORTHO05D005531 7.0e-80 301.6 312 59.3
CiPaw.12G028900 Carya illinoinensis HOM05D004617 ORTHO05D005531 1.1e-77 294.3 317 56.8
Haze_07552 Corylus avellana HOM05D004617 ORTHO05D005531 1.8e-75 287.0 339 52.5
CSS0013084 Camellia sinensis var. sinensis HOM05D004617 ORTHO05D005531 2.3e-75 286.6 316 54.7
QL10p008526 Quercus lobata HOM05D004617 ORTHO05D005531 2.0e-74 283.5 315 52.1
GSVIVG01007687001 Vitis vinifera HOM05D004617 ORTHO05D005531 2.0e-74 283.5 321 53.3
QL10p008663 Quercus lobata HOM05D004617 ORTHO05D005531 2.6e-74 283.1 314 52.5
Dinv38556 Davidia involucrata HOM05D004617 ORTHO05D005531 1.7e-73 280.4 321 53.0
TAR629G3522 Trochodendron aralioides HOM05D004617 ORTHO05D005531 2.2e-73 280.0 316 53.5
Ciclev10020950m.g Citrus clementina HOM05D004617 ORTHO05D005531 1.1e-72 277.7 289 56.7
CSS0042906 Camellia sinensis var. sinensis HOM05D004617 ORTHO05D005531 2.4e-72 276.6 316 52.5
CANSAT80G0933 Cannabis sativa HOM05D004617 ORTHO05D005531 5.9e-71 271.9 310 52.3
Duzib205G1820 Durio zibethinus HOM05D004617 ORTHO05D005531 1.0e-70 271.2 274 57.7
Dinv20620 Davidia involucrata HOM05D004617 ORTHO05D005531 2.3e-70 270.0 321 52.0
PGR044G1277 Punica granatum HOM05D004617 ORTHO05D005531 2.5e-69 266.5 319 49.8
Sed0022669 Sechium edule HOM05D004617 ORTHO05D005531 1.2e-68 264.2 316 49.4
Thecc.03G024100 Theobroma cacao HOM05D004617 ORTHO05D005531 2.1e-68 263.5 300 55.0
Rhsim12G0166500 Rhododendron simsii HOM05D004617 ORTHO05D005531 2.8e-68 263.1 355 46.8
CAN.G338.4 Capsicum annuum HOM05D004617 ORTHO05D005531 3.0e-67 259.6 309 50.2
CiPaw.11G022700 Carya illinoinensis HOM05D004617 ORTHO05D005531 6.8e-67 258.5 307 53.7
CsaV3_1G001290 Cucumis sativus L. HOM05D004617 ORTHO05D005531 3.4e-66 256.1 321 49.2
COL.COLO4_30121 Corchorus olitorius HOM05D004617 ORTHO05D005531 7.5e-66 255.0 288 54.9
Atru.chr9.2539 Acer truncatum HOM05D004617 ORTHO05D005531 1.7e-65 253.8 304 52.0
Gohir.A12G272900 Gossypium hirsutum HOM05D004617 ORTHO05D005531 2.8e-65 253.1 299 52.5
Sopen03g031610 Solanum pennellii HOM05D004617 ORTHO05D005531 1.4e-64 250.8 310 47.7
Gorai.008G294000 Gossypium raimondii HOM05D004617 ORTHO05D005531 1.8e-64 250.4 298 52.3
Potri.012G088000 Populus trichocarpa HOM05D004617 ORTHO05D005531 2.4e-64 250.0 323 48.3
PGSC0003DMG400018106 Solanum tuberosum HOM05D004617 ORTHO05D005531 2.4e-64 250.0 307 48.5
MELO3C026277.2 Cucumis melo HOM05D004617 ORTHO05D005531 3.2e-64 249.6 320 49.1
Solyc03g112550.3 Solanum lycopersicum HOM05D004617 ORTHO05D005531 3.2e-64 249.6 310 47.7
Hma1.2p1_0046F.1_g026830 Hydrangea macrophylla HOM05D004617 ORTHO05D005531 7.0e-64 248.4 328 46.3
Nn4g22667 Nelumbo nucifera HOM05D004617 ORTHO05D005531 9.2e-64 248.1 292 48.6
Manes.06G108000 Manihot esculenta HOM05D004617 ORTHO05D005531 2.7e-63 246.5 297 51.2
Nitab4.5_0001284g0070 Nicotiana tabacum HOM05D004617 ORTHO05D005531 2.7e-63 246.5 317 47.9
Cpa.g.sc153.19 Carica papaya HOM05D004617 ORTHO05D005531 3.5e-63 246.1 300 48.3
Gohir.D12G273600 Gossypium hirsutum HOM05D004617 ORTHO05D005531 1.0e-62 244.6 298 50.7
Nitab4.5_0011992g0040 Nicotiana tabacum HOM05D004617 ORTHO05D005531 1.0e-62 244.6 317 45.7
Potri.015G080900 Populus trichocarpa HOM05D004617 ORTHO05D005531 1.0e-62 244.6 321 47.4
Cc04_g12560 Coffea canephora HOM05D004617 ORTHO05D005531 2.9e-62 243.0 302 50.3
Lsat_1_v5_gn_5_15901 Lactuca sativa HOM05D004617 ORTHO05D005531 3.9e-62 242.7 313 47.0
Potri.T124408 Populus trichocarpa HOM05D004617 ORTHO05D005531 3.9e-62 242.7 301 48.5
ECA246G2887 Erigeron canadensis HOM05D004617 ORTHO05D005531 5.0e-62 242.3 316 45.9
TWI39G0523 Tripterygium wilfordii HOM05D004617 ORTHO05D005531 1.1e-61 241.1 276 52.9
Hund09456 Selenicereus undatus HOM05D004617 ORTHO05D005531 1.5e-61 240.7 311 45.7
HanXRQChr05g0154591 Helianthus annuus HOM05D004617 ORTHO05D005531 4.3e-61 239.2 314 46.2
vmacro16629 Vaccinium macrocarpon HOM05D004617 ORTHO05D005531 5.6e-61 238.8 339 45.1
DCAR_021575 Daucus carota HOM05D004617 ORTHO05D005531 4.7e-60 235.7 312 46.5
MSTRG.23154 Avicennia marina HOM05D004617 ORTHO05D005531 6.1e-60 235.3 263 49.4
ClCG06G017200 Citrullus lanatus HOM05D004617 ORTHO05D005531 6.1e-60 235.3 324 45.4
PSO017G2275 Papaver somniferum HOM05D004617 ORTHO05D005531 8.0e-60 235.0 303 47.5
Glyma.05G040000 Glycine max HOM05D004617 ORTHO05D005531 1.8e-59 233.8 306 46.7
Gohir.A09G172500 Gossypium hirsutum HOM05D004617 ORTHO05D005531 3.1e-59 233.0 312 48.1
Sc04g0001670 Simmondsia chinensis HOM05D004617 ORTHO05D005531 6.8e-59 231.9 312 45.5
arahy.Tifrunner.gnm1.ann1.P4R84V Arachis hypogaea HOM05D004617 ORTHO05D005531 8.9e-59 231.5 295 47.8
FAN02G3554 Fragaria x ananassa HOM05D004617 ORTHO05D005531 8.9e-59 231.5 134 87.3
arahy.Tifrunner.gnm1.ann1.B97T9I Arachis hypogaea HOM05D004617 ORTHO05D005531 1.2e-58 231.1 299 47.2
PSO478G3702 Papaver somniferum HOM05D004617 ORTHO05D005531 1.2e-58 231.1 305 47.9
Gorai.006G189800 Gossypium raimondii HOM05D004617 ORTHO05D005531 2.0e-58 230.3 312 48.4
Lj4g0013782 Lotus japonicus HOM05D004617 ORTHO05D005531 9.8e-58 228.0 309 46.9
Eucgr.K02817 Eucalyptus grandis HOM05D004617 ORTHO05D005531 1.1e-56 224.6 332 44.0
VMungo1215G2409 Vigna mungo HOM05D004617 ORTHO05D005531 1.9e-56 223.8 297 46.5
TWI23G0363 Tripterygium wilfordii HOM05D004617 ORTHO05D005531 2.4e-56 223.4 283 50.5
Peaxi162Scf00089g01634 Petunia axillaris HOM05D004617 ORTHO05D005531 3.2e-56 223.0 316 45.9
Phvul.003G203200 Phaseolus vulgaris HOM05D004617 ORTHO05D005531 9.2e-56 221.5 274 46.7
Oeu001681.1 Olea europaea HOM05D004617 ORTHO05D005531 7.8e-55 218.4 320 44.4
Phvul.009G175700 Phaseolus vulgaris HOM05D004617 ORTHO05D005531 1.3e-54 217.6 300 46.3
Lalb_Chr23g0273321 Lupinus albus HOM05D004617 ORTHO05D005531 3.0e-54 216.5 321 45.5
EL10Ac5g10692 Beta vulgaris HOM05D004617 ORTHO05D005531 5.0e-54 215.7 235 50.2
Sabra15G0104900 Salix brachista HOM05D004617 ORTHO05D005531 5.0e-54 215.7 300 44.7
PGSC0003DMG400027080 Solanum tuberosum HOM05D004617 ORTHO05D005531 5.0e-54 215.7 307 42.0
Solyc06g071600.3 Solanum lycopersicum HOM05D004617 ORTHO05D005531 8.6e-54 214.9 313 41.9
Sabra12G0062800 Salix brachista HOM05D004617 ORTHO05D005531 7.3e-53 211.8 364 40.7
AUR62029851 Chenopodium quinoa HOM05D004617 ORTHO05D005531 2.1e-52 210.3 309 44.0
Sopen06g027890 Solanum pennellii HOM05D004617 ORTHO05D005531 2.8e-52 209.9 309 41.1
Migut.O00131 Erythranthe guttata HOM05D004617 ORTHO05D005531 4.7e-52 209.1 309 43.7
Aqoxy3G01097 Aquilegia oxysepala HOM05D004617 ORTHO05D005531 6.2e-52 208.8 256 45.7
Sc12g0005180 Simmondsia chinensis HOM05D004617 ORTHO05D005531 8.1e-52 208.4 294 42.5
Lj9A445T80 Lonicera japonica HOM05D004617 ORTHO05D005531 1.4e-51 207.6 368 40.5
THA.LOC104798968 Tarenaya hassleriana HOM05D004617 ORTHO05D005531 1.4e-51 207.6 276 45.7
THA.LOC104818211 Tarenaya hassleriana HOM05D004617 ORTHO05D005531 2.3e-51 206.8 287 44.3
MSTRG.11480 Avicennia marina HOM05D004617 ORTHO05D005531 6.8e-51 205.3 307 42.7
Aa31LG4G16830 Aethionema arabicum HOM05D004617 ORTHO05D005531 2.6e-50 203.4 313 43.1
AUR62028750 Chenopodium quinoa HOM05D004617 ORTHO05D005531 2.6e-50 203.4 257 46.3
Ca_21946_v3 Cicer arietinum L. HOM05D004617 ORTHO05D005531 2.6e-50 203.4 284 44.0
Ca_29672_v3 Cicer arietinum L. HOM05D004617 ORTHO05D005531 2.6e-50 203.4 284 44.0
AUR62008173 Chenopodium quinoa HOM05D004617 ORTHO05D005531 3.4e-50 203.0 253 46.2
TPR.G37539 Trifolium pratense HOM05D004617 ORTHO05D005531 3.4e-50 203.0 274 44.9
VMungo1309G0654 Vigna mungo HOM05D004617 ORTHO05D005531 4.4e-50 202.6 322 42.5
C03p66610 Brassica napus HOM05D004617 ORTHO05D005531 2.2e-49 200.3 273 43.6
BcaC01g02324 Brassica carinata HOM05D004617 ORTHO05D005531 2.9e-49 199.9 273 43.6
BolC3t18931H Brassica oleracea HOM05D004617 ORTHO05D005531 2.9e-49 199.9 273 43.6
CAN.G993.37 Capsicum annuum HOM05D004617 ORTHO05D005531 6.4e-49 198.7 314 39.2
AT3G48210 Arabidopsis thaliana HOM05D004617 ORTHO05D005531 1.1e-48 198.0 314 42.0
AL5G27600 Arabidopsis lyrata HOM05D004617 ORTHO05D005531 1.4e-48 197.6 299 41.8
BcaB02g10666 Brassica carinata HOM05D004617 ORTHO05D005531 1.4e-48 197.6 273 43.2
Sp5g13810 Schrenkiella parvula HOM05D004617 ORTHO05D005531 2.4e-48 196.8 273 43.6
Carub.0005s1437 Capsella rubella HOM05D004617 ORTHO05D005531 5.4e-48 195.7 300 41.7
MBI16_g23858_MAGBIO Magnolia biondii HOM05D004617 ORTHO05D005531 5.4e-48 195.7 318 41.2
Lj5A127T55 Lonicera japonica HOM05D004617 ORTHO05D005531 9.2e-48 194.9 245 50.2
CARHR156970 Cardamine hirsuta HOM05D004617 ORTHO05D005531 2.7e-47 193.4 262 44.3
Actinidia19118 Actinidia chinensis HOM05D004617 ORTHO05D005531 3.5e-47 193.0 235 51.1
BraA06t25690Z Brassica rapa HOM05D004617 ORTHO05D005531 3.5e-47 193.0 313 39.9
Thhalv10010559m.g Eutrema salsugineum HOM05D004617 ORTHO05D005531 4.6e-47 192.6 274 42.3
SGA_v2.0_scaffold90G27877 Striga asiatica HOM05D004617 ORTHO05D005531 6.0e-47 192.2 303 40.3
A06p27500 Brassica napus HOM05D004617 ORTHO05D005531 3.0e-46 189.9 313 39.3
Medtr4g105330 Medicago truncatula HOM05D004617 ORTHO05D005531 6.6e-46 188.7 299 42.8
Thhalv10010553m.g Eutrema salsugineum HOM05D004617 ORTHO05D005531 2.1e-44 183.7 274 42.3
Psat4g059160 Pisum sativum HOM05D004617 ORTHO05D005531 1.4e-43 181.0 303 41.3
Gohir.D09G168200 Gossypium hirsutum HOM05D004617 ORTHO05D005531 3.1e-43 179.9 312 43.3
DCAR_004467 Daucus carota HOM05D004617 ORTHO05D005531 2.0e-42 177.2 228 49.1
HPP92_011588 Vanilla planifolia HOM05D004617 ORTHO05D005531 3.7e-41 172.9 309 37.5
Nitab4.5_0003918g0030 Nicotiana tabacum HOM05D004617 ORTHO05D005531 1.4e-40 171.0 313 37.7
SalBow5G0770 Salvia bowleyana HOM05D004617 ORTHO05D005531 1.7e-38 164.1 243 43.6
SalBow5G2990 Salvia bowleyana HOM05D004617 ORTHO05D005531 2.3e-38 163.7 223 43.9
TAR371G0263 Trochodendron aralioides HOM05D004617 ORTHO05D005531 6.6e-38 162.2 190 48.9
Cpa.g.sc153.20 Carica papaya HOM05D004617 ORTHO05D005531 7.3e-37 158.7 184 47.3
unitig_0.g2533 Utricularia gibba HOM05D004617 ORTHO05D005531 3.1e-35 153.3 206 43.7
Os01g0973200 Oryza sativa ssp. japonica HOM05D004617 ORTHO05D005531 9.9e-34 148.3 309 35.9
ATR1152G034 Amborella trichopoda HOM05D004617 ORTHO05D005531 4.9e-33 146.0 270 37.8
CDE05G2613 Ceratophyllum demersum HOM05D004617 ORTHO05D005531 1.0e-30 138.3 266 36.8
SEGI_25965 Sequoiadendron giganteum HOM05D004617 ORTHO05D005531 6.6e-30 135.6 194 40.7
Psat4g095560 Pisum sativum HOM05D004617 ORTHO05D005531 8.7e-30 135.2 320 35.0
Os05g0110700 Oryza sativa ssp. japonica HOM05D004617 ORTHO05D005531 1.1e-29 134.8 224 37.5
Zm00001eb139780 Zea mays HOM05D004617 ORTHO05D005531 2.1e-28 130.6 228 33.3
CDE02G4133 Ceratophyllum demersum HOM05D004617 ORTHO05D005531 4.0e-27 126.3 197 42.1
Zm00001eb362200 Zea mays HOM05D004617 ORTHO05D005531 1.7e-25 120.9 282 33.3
Glyma.04G186200 Glycine max HOM05D004617 ORTHO05D005531 2.9e-25 120.2 149 46.3
Aqoxy5G01948 Aquilegia oxysepala HOM05D004617 ORTHO05D005531 4.2e-24 116.3 175 41.7
BcaC07g39309 Brassica carinata HOM05D004617 ORTHO05D005531 2.8e-20 103.6 183 35.5
arahy.Tifrunner.gnm1.ann1.H09BLY Arachis hypogaea HOM05D004617 ORTHO05D005531 9.0e-19 98.6 105 49.5
Glyma.06G179933 Glycine max HOM05D004617 ORTHO05D005531 2.6e-18 97.1 134 45.5
A06p19470 Brassica napus HOM05D004617 ORTHO05D005531 5.8e-18 95.9 237 30.8
BraA06t25026Z Brassica rapa HOM05D004617 ORTHO05D005531 9.9e-18 95.1 223 31.8
C08p23230 Brassica napus HOM05D004617 ORTHO05D005531 2.9e-17 93.6 184 33.7
Zm00001eb355840 Zea mays HOM05D004617 ORTHO05D005531 4.6e-15 86.3 216 31.9
vmacro20892 Vaccinium macrocarpon HOM05D000448 ORTHO05D000291 1.8e-14 84.3 65 61.5
SMO200G0114 Selaginella moellendorffii HOM05D004617 ORTHO05D005531 1.6e-12 77.8 106 37.7
Atru.chr9.2524 Acer truncatum HOM05D004617 ORTHO05D005531 5.3e-11 72.8 98 46.9
Glyma.17G086900 Glycine max HOM05D004617 ORTHO05D005531 1.3e-09 68.2 65 55.4
Mapoly0029s0121 Marchantia polymorpha HOM05D004617 ORTHO05D005531 1.3e-09 68.2 178 29.2
Pp3c3_37370 Physcomitrium patens HOM05D004617 ORTHO05D005531 1.9e-08 64.3 205 29.3
Pp3c8_1270 Physcomitrium patens HOM05D004617 ORTHO05D005531 3.5e-07 60.1 170 27.1
arahy.Tifrunner.gnm1.ann1.8UC028 Arachis hypogaea HOM05D004617 ORTHO05D005531 7.9e-07 58.9 99 39.4


User provided reference genes

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