Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_5g05640 Fragaria vesca HOM05D004430 ORTHO05D005088 0.0e+00 2880.5 1555 100.0
FAN18G1146 Fragaria x ananassa HOM05D004430 ORTHO05D005088 0.0e+00 2755.3 1555 97.0
FAN18G2048 Fragaria x ananassa HOM05D004430 ORTHO05D005088 0.0e+00 2726.8 1557 95.8
FAN13G0016 Fragaria x ananassa HOM05D004430 ORTHO05D005088 0.0e+00 2680.2 1555 92.8
FAN08G1542 Fragaria x ananassa HOM05D004430 ORTHO05D005088 0.0e+00 2667.1 1562 92.9
FAN04G2171 Fragaria x ananassa HOM05D004430 ORTHO05D005088 0.0e+00 2502.2 1558 88.5
RcHm_v2.0_Chr7g0193171 Rosa chinensis HOM05D004430 ORTHO05D005088 0.0e+00 2442.5 1565 84.6
Prupe.5G170400 Prunus persica HOM05D004430 ORTHO05D005088 0.0e+00 1796.6 1708 62.3
MD06G1170800 Malus domestica HOM05D004430 ORTHO05D005088 0.0e+00 1788.1 1620 63.7
MD14G1176500 Malus domestica HOM05D004430 ORTHO05D005088 0.0e+00 1712.6 1624 62.0
Atru.chr9.2519 Acer truncatum HOM05D004430 ORTHO05D005088 0.0e+00 1278.1 1680 51.4
Dinv20629 Davidia involucrata HOM05D004430 ORTHO05D005088 0.0e+00 1233.8 1625 50.6
QL10p008934 Quercus lobata HOM05D004430 ORTHO05D005088 0.0e+00 1221.5 1639 49.9
Thecc.03G018800 Theobroma cacao HOM05D004430 ORTHO05D005088 0.0e+00 1194.5 1602 49.2
Gorai.005G135600 Gossypium raimondii HOM05D004430 ORTHO05D005088 0.0e+00 1186.0 1625 49.1
Gohir.D02G117900 Gossypium hirsutum HOM05D004430 ORTHO05D005088 0.0e+00 1181.8 1626 49.0
Gohir.A03G089900 Gossypium hirsutum HOM05D004430 ORTHO05D005088 0.0e+00 1175.6 1628 48.9
Dinv38562 Davidia involucrata HOM05D004430 ORTHO05D005088 0.0e+00 1163.3 1715 46.3
COL.COLO4_30100 Corchorus olitorius HOM05D004430 ORTHO05D005088 0.0e+00 1148.7 1637 48.0
CSS0010843 Camellia sinensis var. sinensis HOM05D004430 ORTHO05D005088 0.0e+00 1141.3 1602 48.1
GSVIVG01007703001 Vitis vinifera HOM05D004430 ORTHO05D005088 0.0e+00 1134.4 1591 48.1
CANSAT80G0620 Cannabis sativa HOM05D004430 ORTHO05D005088 0.0e+00 1114.4 1632 48.5
Duzib205G1695 Durio zibethinus HOM05D004430 ORTHO05D005088 0.0e+00 1110.1 1632 47.2
Duzib084G1065 Durio zibethinus HOM05D004430 ORTHO05D005088 0.0e+00 1095.5 1631 46.4
Lj4g0003819 Lotus japonicus HOM05D004430 ORTHO05D005088 7.5e-308 1061.2 1633 46.1
Potri.015G079800 Populus trichocarpa HOM05D004430 ORTHO05D005088 7.8e-305 1051.2 1624 45.5
Glyma.17G087600 Glycine max HOM05D004430 ORTHO05D005088 2.6e-300 1036.2 1625 45.5
Manes.06G107200 Manihot esculenta HOM05D004430 ORTHO05D005088 8.6e-296 1021.1 1662 43.3
Duzib068G0887 Durio zibethinus HOM05D004430 ORTHO05D005088 1.5e-295 1020.4 1630 45.0
Potri.012G088500 Populus trichocarpa HOM05D004430 ORTHO05D005088 9.9e-292 1007.7 1619 44.7
Manes.06G107300 Manihot esculenta HOM05D004430 ORTHO05D005088 8.4e-291 1004.6 1676 43.4
TWI39G0976 Tripterygium wilfordii HOM05D004430 ORTHO05D005088 1.2e-289 1000.7 1637 44.6
Lj9C446G12 Lonicera japonica HOM05D004430 ORTHO05D005088 1.3e-288 997.3 1601 44.5
Sabra15G0104100 Salix brachista HOM05D004430 ORTHO05D005088 1.4e-285 987.3 1604 44.6
arahy.Tifrunner.gnm1.ann1.FBBL0Z Arachis hypogaea HOM05D004430 ORTHO05D005088 3.4e-284 982.6 1632 44.8
Lalb_Chr12g0201701 Lupinus albus HOM05D004430 ORTHO05D005088 6.4e-283 978.4 1636 44.7
Sabra12G0063700 Salix brachista HOM05D004430 ORTHO05D005088 2.1e-281 973.4 1647 43.5
TWI14G0761 Tripterygium wilfordii HOM05D004430 ORTHO05D005088 1.0e-280 971.1 1649 42.9
ClCG06G017130 Citrullus lanatus HOM05D004430 ORTHO05D005088 5.1e-280 968.8 1606 43.8
CiPaw.11G023400 Carya illinoinensis HOM05D004430 ORTHO05D005088 1.9e-279 966.8 1550 43.9
TAR374G1038 Trochodendron aralioides HOM05D004430 ORTHO05D005088 3.1e-277 959.5 1663 43.5
Ciclev10018497m.g Citrus clementina HOM05D004430 ORTHO05D005088 3.8e-275 952.6 1429 46.7
VMungo1215G2998 Vigna mungo HOM05D004430 ORTHO05D005088 2.1e-273 946.8 1661 43.2
Glyma.05G039400 Glycine max HOM05D004430 ORTHO05D005088 3.1e-269 932.9 1618 43.6
Lalb_Chr07g0182821 Lupinus albus HOM05D004430 ORTHO05D005088 1.3e-267 927.5 1634 41.9
vmacro19413 Vaccinium macrocarpon HOM05D004430 ORTHO05D005088 1.4e-266 924.1 1629 42.5
Ca_16154_v3 Cicer arietinum L. HOM05D004430 ORTHO05D005088 1.8e-264 917.1 1611 42.8
CsaV3_1G001360 Cucumis sativus L. HOM05D004430 ORTHO05D005088 8.2e-262 908.3 1618 41.8
MELO3C026283.2 Cucumis melo HOM05D004430 ORTHO05D005088 1.4e-261 907.5 1617 41.7
Sed0016557 Sechium edule HOM05D004430 ORTHO05D005088 1.0e-256 891.3 1612 42.0
Lalb_Chr13g0297721 Lupinus albus HOM05D004430 ORTHO05D005088 2.5e-255 886.7 1650 42.6
TPR.G28716 Trifolium pratense HOM05D004430 ORTHO05D005088 2.5e-255 886.7 1609 41.6
Nitab4.5_0003229g0080 Nicotiana tabacum HOM05D004430 ORTHO05D005088 2.5e-250 870.2 1617 41.5
Ca_16155_v3 Cicer arietinum L. HOM05D004430 ORTHO05D005088 3.3e-247 859.8 1600 41.7
Phvul.003G202300 Phaseolus vulgaris HOM05D004430 ORTHO05D005088 5.7e-247 859.0 1680 41.2
Sed0007760 Sechium edule HOM05D004430 ORTHO05D005088 7.4e-247 858.6 1612 41.5
Rhsim08G0174600 Rhododendron simsii HOM05D004430 ORTHO05D005088 3.8e-243 846.3 1627 41.7
Sopen03g031740 Solanum pennellii HOM05D004430 ORTHO05D005088 1.4e-242 844.3 1632 40.0
Solyc03g112660.3 Solanum lycopersicum HOM05D004430 ORTHO05D005088 3.2e-242 843.2 1631 39.7
Nitab4.5_0001207g0060 Nicotiana tabacum HOM05D004430 ORTHO05D005088 6.1e-241 839.0 1646 40.0
Medtr3g077440 Medicago truncatula HOM05D004430 ORTHO05D005088 5.3e-237 825.9 1607 39.9
Eucgr.B00248 Eucalyptus grandis HOM05D004430 ORTHO05D005088 2.2e-235 820.5 1630 39.8
AUR62028764 Chenopodium quinoa HOM05D004430 ORTHO05D005088 5.0e-235 819.3 1632 40.0
Nn3g16781 Nelumbo nucifera HOM05D004430 ORTHO05D005088 2.2e-230 803.9 1706 39.3
PGR083G1025 Punica granatum HOM05D004430 ORTHO05D005088 1.8e-229 800.8 1627 40.4
Peaxi162Scf00089g00174 Petunia axillaris HOM05D004430 ORTHO05D005088 3.5e-228 796.6 1632 39.5
CiPaw.12G028500 Carya illinoinensis HOM05D004430 ORTHO05D005088 1.9e-226 790.8 1386 42.5
AUR62008183 Chenopodium quinoa HOM05D004430 ORTHO05D005088 2.7e-225 786.9 1607 39.4
Oeu036008.4 Olea europaea HOM05D004430 ORTHO05D005088 1.3e-219 768.1 1604 39.4
CAN.G1166.22 Capsicum annuum HOM05D004430 ORTHO05D005088 5.2e-216 756.1 1614 38.9
Oeu024704.1 Olea europaea HOM05D004430 ORTHO05D005088 2.8e-209 733.8 1635 37.7
Migut.D01964 Erythranthe guttata HOM05D004430 ORTHO05D005088 8.0e-209 732.3 1647 38.7
THA.LOC104809247 Tarenaya hassleriana HOM05D004430 ORTHO05D005088 1.4e-208 731.5 1607 37.5
Cc04_g12380 Coffea canephora HOM05D004430 ORTHO05D005088 2.6e-207 727.2 1274 42.2
SalBow6G6905 Salvia bowleyana HOM05D004430 ORTHO05D005088 1.8e-205 721.1 1643 37.9
SalBow6G6763 Salvia bowleyana HOM05D004430 ORTHO05D005088 5.4e-205 719.5 1643 37.9
EL10Ac5g10708 Beta vulgaris HOM05D004430 ORTHO05D005088 2.9e-203 713.8 1621 37.8
TPR.G28721 Trifolium pratense HOM05D004430 ORTHO05D005088 3.2e-197 693.7 1592 37.8
MBI19_g24062_MAGBIO Magnolia biondii HOM05D004430 ORTHO05D005088 1.6e-196 691.4 1750 36.2
THA.LOC104809778 Tarenaya hassleriana HOM05D004430 ORTHO05D005088 7.8e-196 689.1 1590 36.9
Psat5g115080 Pisum sativum HOM05D004430 ORTHO05D005088 1.5e-194 684.9 1601 37.3
Actinidia19338 Actinidia chinensis HOM05D004430 ORTHO05D005088 1.9e-194 684.5 1219 41.9
Sc04g0001690 Simmondsia chinensis HOM05D004430 ORTHO05D005088 4.7e-193 679.9 1587 37.8
MSTRG.4361 Avicennia marina HOM05D004430 ORTHO05D005088 7.5e-191 672.5 1635 36.6
Hund02762 Selenicereus undatus HOM05D004430 ORTHO05D005088 9.8e-191 672.2 1587 37.6
Medtr3g077450 Medicago truncatula HOM05D004430 ORTHO05D005088 6.4e-190 669.5 1599 37.0
Psat5g115040 Pisum sativum HOM05D004430 ORTHO05D005088 1.7e-187 661.4 1590 36.4
Ah.11g051460 Amaranthus hybridus HOM05D004430 ORTHO05D005088 6.6e-187 659.4 1628 36.0
Aqoxy3G01105 Aquilegia oxysepala HOM05D004430 ORTHO05D005088 9.6e-178 629.0 1668 35.8
ECA232G4503 Erigeron canadensis HOM05D004430 ORTHO05D005088 4.9e-174 616.7 1592 37.2
PGSC0003DMG402018164 Solanum tuberosum HOM05D004430 ORTHO05D005088 1.9e-173 614.8 1359 37.4
PSO017G2086 Papaver somniferum HOM05D004430 ORTHO05D005088 1.5e-170 605.1 1737 34.3
PSO478G3312 Papaver somniferum HOM05D004430 ORTHO05D005088 8.1e-169 599.4 1739 34.1
Sp7g22670 Schrenkiella parvula HOM05D004430 ORTHO05D005088 3.4e-167 594.0 1607 35.4
AT4G24680 Arabidopsis thaliana HOM05D004430 ORTHO05D005088 2.2e-166 591.3 1603 34.7
AL7G28520 Arabidopsis lyrata HOM05D004430 ORTHO05D005088 5.8e-159 566.6 1608 34.8
CARHR232060 Cardamine hirsuta HOM05D004430 ORTHO05D005088 1.4e-157 562.0 1603 33.6
Aa31LG4G9770 Aethionema arabicum HOM05D004430 ORTHO05D005088 1.9e-157 561.6 1600 35.2
Carub.0007s1638 Capsella rubella HOM05D004430 ORTHO05D005088 3.5e-156 557.4 1605 34.2
BolC7t45865H Brassica oleracea HOM05D004430 ORTHO05D005088 3.3e-154 550.8 1598 34.4
C07p53740 Brassica napus HOM05D004430 ORTHO05D005088 7.4e-154 549.7 1598 34.4
Lsat_1_v5_gn_4_75700 Lactuca sativa HOM05D004430 ORTHO05D005088 1.6e-153 548.5 1596 34.0
Thhalv10024213m.g Eutrema salsugineum HOM05D004430 ORTHO05D005088 1.4e-152 545.4 1633 34.0
Thhalv10024214m.g Eutrema salsugineum HOM05D004430 ORTHO05D005088 1.2e-151 542.3 1602 34.0
BraA03t14619Z Brassica rapa HOM05D004430 ORTHO05D005088 1.5e-151 542.0 1594 34.1
A03p55450 Brassica napus HOM05D004430 ORTHO05D005088 2.2e-150 538.1 1597 34.2
Hma1.2p1_0046F.1_g026730 Hydrangea macrophylla HOM05D004430 ORTHO05D005088 1.6e-148 531.9 1198 38.5
TAR622G0490 Trochodendron aralioides HOM05D004430 ORTHO05D005088 3.7e-145 520.8 993 40.7
Haze_07543 Corylus avellana HOM05D004430 ORTHO05D005088 1.4e-141 508.8 1577 32.6
arahy.Tifrunner.gnm1.ann1.I95HTR Arachis hypogaea HOM05D004430 ORTHO05D005088 7.2e-141 506.5 785 45.0
MBI10_g44386_MAGBIO Magnolia biondii HOM05D004430 ORTHO05D005088 1.0e-134 486.1 1528 32.8
HanXRQChr17g0548691 Helianthus annuus HOM05D004430 ORTHO05D005088 9.4e-133 479.6 1576 34.3
SGA_v2.0_scaffold7G04148 Striga asiatica HOM05D004430 ORTHO05D005088 2.7e-132 478.0 1592 34.0
C01p20010 Brassica napus HOM05D004430 ORTHO05D005088 1.7e-129 468.8 1606 31.9
BcaC06g32869 Brassica carinata HOM05D004430 ORTHO05D005088 1.8e-128 465.3 1577 31.8
HanXRQChr11g0348291 Helianthus annuus HOM05D004430 ORTHO05D005088 3.2e-125 454.5 695 45.8
BraA01t01536Z Brassica rapa HOM05D004430 ORTHO05D005088 1.6e-124 452.2 1610 31.5
A01p16020 Brassica napus HOM05D004430 ORTHO05D005088 3.0e-123 448.0 1603 31.1
BolC1t01928H Brassica oleracea HOM05D004430 ORTHO05D005088 5.1e-123 447.2 1607 31.1
ATR0757G157 Amborella trichopoda HOM05D004430 ORTHO05D005088 6.7e-115 420.2 1682 31.0
BcaC09g50842 Brassica carinata HOM05D004430 ORTHO05D005088 2.7e-111 408.3 1585 30.8
BcaB03g12441 Brassica carinata HOM05D004430 ORTHO05D005088 8.5e-110 403.3 1598 29.7
unitig_37.g12744 Utricularia gibba HOM05D004430 ORTHO05D005088 2.6e-106 391.7 1611 30.2
Actinidia19112 Actinidia chinensis HOM05D004430 ORTHO05D005088 8.6e-94 350.1 339 60.2
Actinidia33085 Actinidia chinensis HOM05D004430 ORTHO05D005088 1.7e-89 335.9 697 39.6
Zm00001eb136860 Zea mays HOM05D004430 ORTHO05D005088 1.4e-72 279.6 1651 28.3
Actinidia19110 Actinidia chinensis HOM05D005107 ORTHO05D006200 3.4e-66 258.5 508 37.6
Zm00001eb028710 Zea mays HOM05D004430 ORTHO05D005088 3.4e-66 258.5 1569 27.9
HPP92_024337 Vanilla planifolia HOM05D004430 ORTHO05D005088 9.9e-66 256.9 1301 28.5
CDE06G0437 Ceratophyllum demersum HOM05D004430 ORTHO05D005088 9.6e-61 240.4 1587 25.8
Cpa.g.sc153.6 Carica papaya HOM05D004430 ORTHO05D005088 5.8e-58 231.1 194 71.1
MBI10_g44384_MAGBIO Magnolia biondii HOM05D004430 ORTHO05D005088 7.6e-58 230.7 204 65.7
Actinidia19111 Actinidia chinensis HOM05D004430 ORTHO05D005088 3.3e-53 215.3 461 37.5
SHI17143 Sapria himalayana HOM05D004430 ORTHO05D005088 2.8e-52 212.2 685 31.7
HPP92_006251 Vanilla planifolia HOM05D004430 ORTHO05D005088 2.4e-48 199.1 1560 24.6
HPP92_006241 Vanilla planifolia HOM05D004430 ORTHO05D005088 2.7e-47 195.7 212 56.1
SEGI_40513 Sequoiadendron giganteum HOM05D004430 ORTHO05D005088 8.7e-46 190.7 1502 27.5
CDE02G0036 Ceratophyllum demersum HOM05D004430 ORTHO05D005088 4.8e-44 184.9 203 55.2
unitig_46.g18473 Utricularia gibba HOM05D004430 ORTHO05D007989 1.8e-43 183.0 1562 26.8
Actinidia33086 Actinidia chinensis HOM05D004430 ORTHO05D005088 1.3e-41 176.8 369 39.6
HPP92_024330 Vanilla planifolia HOM05D004430 ORTHO05D005088 2.3e-38 166.0 1298 25.5
Psat2g086200 Pisum sativum HOM05D004430 ORTHO05D005088 1.3e-25 123.6 190 43.2
Psat2g086240 Pisum sativum HOM05D004430 ORTHO05D005088 2.3e-22 112.8 194 40.2
Psat2g098600 Pisum sativum HOM05D003093 ORTHO05D005088 1.3e-20 107.1 173 42.2
TAR622G0342 Trochodendron aralioides HOM05D004430 ORTHO05D005088 1.1e-19 104.0 66 75.8
TAR629G1829 Trochodendron aralioides HOM05D003072 ORTHO05D008464 1.2e-18 100.5 124 45.2
Actinidia19337 Actinidia chinensis HOM05D004430 ORTHO05D005088 3.4e-18 99.0 172 43.6
TAR622G0951 Trochodendron aralioides HOM05D004430 ORTHO05D005088 4.5e-18 98.6 149 45.0
Mapoly0057s0099 Marchantia polymorpha HOM05D004430 ORTHO05D005088 1.7e-17 96.7 1634 26.8
Pp3c26_2670 Physcomitrium patens HOM05D004430 ORTHO05D005088 3.8e-17 95.5 235 41.7
THA.LOC104822199 Tarenaya hassleriana HOM05D004430 ORTHO05D005088 9.4e-16 90.9 137 40.1
THA.LOC104816711 Tarenaya hassleriana HOM05D004430 ORTHO05D005088 2.7e-15 89.4 274 30.7
CBR_g19277 Chara braunii HOM05D004430 ORTHO05D005088 3.6e-15 89.0 493 31.6
Pp3c4_23740 Physcomitrium patens HOM05D004430 ORTHO05D005088 3.9e-14 85.5 1424 24.6
SMO174G0145 Selaginella moellendorffii HOM05D004430 ORTHO05D005088 3.3e-13 82.4 890 25.3
Pp3c4_22960 Physcomitrium patens HOM05D004430 ORTHO05D005088 1.0e-09 70.9 1371 23.6
Psat0s4895g0040 Pisum sativum HOM05D002020 ORTHO05D005088 4.7e-07 62.0 62 54.8
Psat1g046400 Pisum sativum HOM05D004430 ORTHO05D005088 2.3e-06 59.7 196 32.1


User provided reference genes

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