Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_5g05440 Fragaria vesca HOM05D006234 ORTHO05D007813 1.6e-139 499.6 283 100.0
FAN18G0739 Fragaria x ananassa HOM05D006234 ORTHO05D007813 1.6e-139 499.6 283 100.0
FAN18G3270 Fragaria x ananassa HOM05D006234 ORTHO05D007813 1.3e-138 496.5 283 99.6
FAN08G0279 Fragaria x ananassa HOM05D006234 ORTHO05D007813 6.5e-133 477.6 297 87.2
FAN04G0097 Fragaria x ananassa HOM05D006234 ORTHO05D007813 1.9e-129 466.1 288 92.7
RcHm_v2.0_Chr7g0193391 Rosa chinensis HOM05D006234 ORTHO05D007813 8.2e-120 434.1 290 89.3
MD06G1172700 Malus domestica HOM05D006234 ORTHO05D007813 1.8e-103 379.8 292 76.7
MD14G1178600 Malus domestica HOM05D006234 ORTHO05D007813 3.1e-103 379.0 292 76.4
FAN13G1809 Fragaria x ananassa HOM05D006234 ORTHO05D007813 7.0e-95 351.3 199 89.4
CANSAT80G1835 Cannabis sativa HOM05D006234 ORTHO05D007813 4.7e-91 338.6 299 70.9
Thecc.03G014200 Theobroma cacao HOM05D006234 ORTHO05D007813 6.1e-91 338.2 303 73.3
COL.COLO4_30066 Corchorus olitorius HOM05D006234 ORTHO05D007813 5.2e-90 335.1 298 64.8
GSVIVG01007727001 Vitis vinifera HOM05D006234 ORTHO05D007813 5.2e-90 335.1 288 68.1
Sabra12G0058900 Salix brachista HOM05D006234 ORTHO05D007813 2.0e-89 333.2 281 73.0
CSS0048541 Camellia sinensis var. sinensis HOM05D006234 ORTHO05D007813 3.4e-89 332.4 296 64.5
Atru.chr9.2492 Acer truncatum HOM05D006234 ORTHO05D007813 4.4e-89 332.0 212 76.4
CSS0047520 Camellia sinensis var. sinensis HOM05D006234 ORTHO05D007813 4.4e-89 332.0 296 64.5
Potri.012G082300 Populus trichocarpa HOM05D006234 ORTHO05D007813 4.4e-89 332.0 283 70.3
Haze_07514 Corylus avellana HOM05D006234 ORTHO05D007813 5.7e-89 331.6 288 75.0
Cfa019148 Carpinus fangiana HOM05D006234 ORTHO05D007813 7.5e-89 331.3 288 75.0
Gohir.D12G275500 Gossypium hirsutum HOM05D006234 ORTHO05D007813 7.5e-89 331.3 294 68.0
Gohir.A12G274800 Gossypium hirsutum HOM05D006234 ORTHO05D007813 1.3e-88 330.5 298 66.8
Gorai.008G296000 Gossypium raimondii HOM05D006234 ORTHO05D007813 2.2e-88 329.7 230 79.6
Manes.14G064600 Manihot esculenta HOM05D006234 ORTHO05D007813 2.2e-88 329.7 211 85.3
Lj9A446T64 Lonicera japonica HOM05D006234 ORTHO05D007813 3.7e-88 328.9 294 68.0
Nn4g22716 Nelumbo nucifera HOM05D006234 ORTHO05D007813 4.9e-88 328.6 279 68.8
QL10p010716 Quercus lobata HOM05D006234 ORTHO05D007813 8.3e-88 327.8 210 88.6
MELO3C002271.2 Cucumis melo HOM05D006234 ORTHO05D007813 1.4e-87 327.0 283 73.5
CsaV3_1G008570 Cucumis sativus L. HOM05D006234 ORTHO05D007813 1.8e-87 326.6 283 73.5
Sed0024030 Sechium edule HOM05D006234 ORTHO05D007813 2.4e-87 326.2 287 72.5
Sc10g0010120 Simmondsia chinensis HOM05D006234 ORTHO05D007813 5.4e-87 325.1 258 70.9
arahy.Tifrunner.gnm1.ann1.ZL3RZ2 Arachis hypogaea HOM05D006234 ORTHO05D007813 7.0e-87 324.7 246 74.4
Hma1.2p1_0592F.1_g185420 Hydrangea macrophylla HOM05D006234 ORTHO05D007813 9.2e-87 324.3 267 66.3
Rhsim12G0165600 Rhododendron simsii HOM05D006234 ORTHO05D007813 1.2e-86 323.9 226 77.0
CiPaw.12G027800 Carya illinoinensis HOM05D006234 ORTHO05D007813 2.0e-86 323.2 289 72.3
QL10p011029 Quercus lobata HOM05D006234 ORTHO05D007813 2.0e-86 323.2 210 87.6
Potri.015G078100 Populus trichocarpa HOM05D006234 ORTHO05D007813 4.5e-86 322.0 283 70.3
PGR044G0892 Punica granatum HOM05D006234 ORTHO05D007813 7.8e-86 321.2 289 66.4
Eucgr.K02833 Eucalyptus grandis HOM05D006234 ORTHO05D007813 1.0e-85 320.9 210 75.7
arahy.Tifrunner.gnm1.ann1.I5PLYK Arachis hypogaea HOM05D006234 ORTHO05D007813 1.3e-85 320.5 246 74.0
Glyma.17G088400 Glycine max HOM05D006234 ORTHO05D007813 1.7e-85 320.1 243 68.7
Nitab4.5_0000025g0560 Nicotiana tabacum HOM05D006234 ORTHO05D007813 2.9e-85 319.3 279 65.6
Phvul.003G201500 Phaseolus vulgaris HOM05D006234 ORTHO05D007813 2.9e-85 319.3 280 66.8
Ah.02g110560 Amaranthus hybridus HOM05D006234 ORTHO05D007813 2.5e-84 316.2 208 81.2
Medtr4g105610 Medicago truncatula HOM05D006234 ORTHO05D007813 4.3e-84 315.5 212 74.1
TPR.G37565 Trifolium pratense HOM05D006234 ORTHO05D007813 7.3e-84 314.7 212 73.1
Glyma.05G038600 Glycine max HOM05D006234 ORTHO05D007813 9.5e-84 314.3 212 73.1
Hund09446 Selenicereus undatus HOM05D006234 ORTHO05D007813 9.5e-84 314.3 298 61.1
Sopen12g011710 Solanum pennellii HOM05D006234 ORTHO05D007813 1.2e-83 313.9 215 72.1
Lj4g0025683 Lotus japonicus HOM05D006234 ORTHO05D007813 1.6e-83 313.5 212 77.8
EL10Ac5g10733 Beta vulgaris HOM05D006234 ORTHO05D007813 2.1e-83 313.2 206 74.3
AUR62030948 Chenopodium quinoa HOM05D006234 ORTHO05D007813 2.1e-83 313.2 208 75.0
Lsat_1_v5_gn_5_15020 Lactuca sativa HOM05D006234 ORTHO05D007813 3.6e-83 312.4 286 65.4
Ciclev10021475m.g Citrus clementina HOM05D006234 ORTHO05D007813 8.0e-83 311.2 210 72.9
vmacro16618 Vaccinium macrocarpon HOM05D006234 ORTHO05D007813 8.0e-83 311.2 237 67.1
Aqoxy3G02888 Aquilegia oxysepala HOM05D006234 ORTHO05D007813 1.0e-82 310.8 233 75.5
Sabra15G0102700 Salix brachista HOM05D006234 ORTHO05D007813 1.4e-82 310.5 303 63.4
Cc04_g12080 Coffea canephora HOM05D006234 ORTHO05D007813 1.8e-82 310.1 297 63.3
Lalb_Chr13g0297731 Lupinus albus HOM05D006234 ORTHO05D007813 3.0e-82 309.3 211 73.0
Oeu020907.1 Olea europaea HOM05D006234 ORTHO05D007813 4.0e-82 308.9 210 81.9
Nitab4.5_0001514g0060 Nicotiana tabacum HOM05D006234 ORTHO05D007813 6.8e-82 308.1 203 79.8
Migut.O00096 Erythranthe guttata HOM05D006234 ORTHO05D007813 1.5e-81 307.0 278 66.9
Peaxi162Scf00255g01121 Petunia axillaris HOM05D006234 ORTHO05D007813 9.8e-81 304.3 231 67.5
unitig_60.g25412 Utricularia gibba HOM05D006234 ORTHO05D007813 9.8e-81 304.3 232 73.7
PSO063G7211 Papaver somniferum HOM05D006234 ORTHO05D007813 4.9e-80 302.0 211 78.2
PSO832G4587 Papaver somniferum HOM05D006234 ORTHO05D007813 1.4e-79 300.4 211 77.7
Hund02751 Selenicereus undatus HOM05D006234 ORTHO05D007813 2.4e-79 299.7 242 64.9
ClCG01G013210 Citrullus lanatus HOM05D006234 ORTHO05D007813 3.2e-79 299.3 287 63.8
HanXRQChr05g0155761 Helianthus annuus HOM05D006234 ORTHO05D007813 4.1e-79 298.9 206 80.6
PGSC0003DMG401026661 Solanum tuberosum HOM05D006234 ORTHO05D007813 1.2e-78 297.4 239 66.9
MSTRG.9679 Avicennia marina HOM05D006234 ORTHO05D007813 1.6e-78 297.0 210 80.0
Lj1g0005957 Lotus japonicus HOM05D006234 ORTHO05D007813 2.0e-78 296.6 282 64.2
SGA_v2.0_scaffold90G27902 Striga asiatica HOM05D006234 ORTHO05D007813 3.5e-78 295.8 279 60.2
Zm00001eb345780 Zea mays HOM05D006234 ORTHO05D007813 3.5e-78 295.8 212 67.9
SalBow5G5218 Salvia bowleyana HOM05D006234 ORTHO05D007813 6.0e-78 295.0 211 69.7
THA.LOC104809262 Tarenaya hassleriana HOM05D006234 ORTHO05D007813 3.0e-77 292.7 244 62.3
Duzib205G1984 Durio zibethinus HOM05D006234 ORTHO05D007813 5.6e-76 288.5 299 58.2
Glyma.04G184400 Glycine max HOM05D006234 ORTHO05D007813 1.2e-75 287.3 243 67.1
SalBow6G2400 Salvia bowleyana HOM05D006234 ORTHO05D007813 2.8e-75 286.2 209 78.0
SGA_v2.0_scaffold114G31825 Striga asiatica HOM05D006234 ORTHO05D007813 2.3e-74 283.1 210 67.6
HPP92_001303 Vanilla planifolia HOM05D006234 ORTHO05D007813 2.3e-74 283.1 211 64.9
TAR629G2947 Trochodendron aralioides HOM05D006234 ORTHO05D007813 3.1e-74 282.7 199 79.9
VMungo1309G2926 Vigna mungo HOM05D006234 ORTHO05D007813 8.9e-74 281.2 242 58.7
ECA246G1070 Erigeron canadensis HOM05D006234 ORTHO05D007813 1.2e-73 280.8 210 75.2
Os05g0170800 Oryza sativa ssp. japonica HOM05D006234 ORTHO05D007813 1.5e-73 280.4 212 70.3
TAR622G1324 Trochodendron aralioides HOM05D006234 ORTHO05D007813 2.9e-72 276.2 179 88.3
SalBow6G3516 Salvia bowleyana HOM05D006234 ORTHO05D007813 6.4e-72 275.0 186 72.6
VMungo1215G2331 Vigna mungo HOM05D006234 ORTHO05D007813 6.4e-72 275.0 247 63.2
Glyma.06G181500 Glycine max HOM05D006234 ORTHO05D007813 8.3e-72 274.6 276 59.1
AUR62008196 Chenopodium quinoa HOM05D006234 ORTHO05D007813 1.1e-71 274.2 240 62.9
MBI10_g27998_MAGBIO Magnolia biondii HOM05D006234 ORTHO05D007813 9.2e-71 271.2 204 69.1
Manes.06G106000 Manihot esculenta HOM05D006234 ORTHO05D007813 4.6e-70 268.9 253 69.6
arahy.Tifrunner.gnm1.ann1.HN9NVD Arachis hypogaea HOM05D006234 ORTHO05D007813 3.9e-69 265.8 211 62.1
SEGI_35494 Sequoiadendron giganteum HOM05D006234 ORTHO05D007813 1.5e-68 263.8 211 62.1
Phvul.009G177500 Phaseolus vulgaris HOM05D006234 ORTHO05D007813 1.9e-68 263.5 243 56.4
Zm00001eb124590 Zea mays HOM05D006234 ORTHO05D007813 2.8e-67 259.6 214 62.1
CAN.G263.4 Capsicum annuum HOM05D006234 ORTHO05D007813 8.1e-67 258.1 179 72.6
Cpa.g.sc685.2 Carica papaya HOM05D006234 ORTHO05D007813 2.3e-66 256.5 139 84.2
Prupe.5G172000 Prunus persica HOM05D006234 ORTHO05D007813 1.1e-63 247.7 226 73.0
CDE04G1656 Ceratophyllum demersum HOM05D006234 ORTHO05D007813 4.1e-63 245.7 211 68.2
HanXRQChr05g0132691 Helianthus annuus HOM05D006234 ORTHO05D007813 5.4e-63 245.4 226 58.4
Nn3g16823 Nelumbo nucifera HOM05D006234 ORTHO05D007813 7.1e-63 245.0 305 49.5
arahy.Tifrunner.gnm1.ann1.68I129 Arachis hypogaea HOM05D006234 ORTHO05D007813 1.2e-62 244.2 211 60.7
Dinv38575 Davidia involucrata HOM05D006234 ORTHO05D007813 3.0e-61 239.6 237 66.7
Actinidia19103 Actinidia chinensis HOM05D006234 ORTHO05D007813 6.0e-54 215.3 133 75.9
Pp3c21_1540 Physcomitrium patens HOM05D006234 ORTHO05D007813 3.2e-47 193.0 202 57.9
SalBow1G2571 Salvia bowleyana HOM05D006234 ORTHO05D007813 1.1e-39 167.9 153 58.2
Aqoxy6G01962 Aquilegia oxysepala HOM05D006234 ORTHO05D007813 6.0e-38 162.2 134 63.4
MCO05G167 Micromonas commoda HOM05D006234 ORTHO05D007813 2.4e-31 140.2 176 43.2
Cre16.g650500 Chlamydomonas reinhardtii HOM05D006234 ORTHO05D007813 1.4e-26 124.4 177 49.7
DCAR_026145 Daucus carota HOM05D007767 ORTHO05D010057 7.1e-23 112.1 169 59.8
Lalb_Chr08g0236591 Lupinus albus HOM05D006234 ORTHO05D007813 4.6e-22 109.4 65 76.9
SalBow8G5646 Salvia bowleyana HOM05D006234 ORTHO05D007813 7.9e-22 108.6 179 38.5
Psat5g000720 Pisum sativum HOM05D006234 ORTHO05D007813 5.1e-21 105.9 90 64.4
Ca_21933_v3 Cicer arietinum L. HOM05D000957 ORTHO05D000754 1.5e-20 104.4 89 65.2
Solyc12g021360.3 Solanum lycopersicum HOM05D006234 ORTHO05D007813 2.2e-19 100.5 104 54.8
Cre09.g387134 Chlamydomonas reinhardtii HOM05D006234 ORTHO05D007813 7.7e-17 92.0 131 35.9
SalBow1G3204 Salvia bowleyana HOM05D006234 ORTHO05D007813 1.3e-16 91.3 74 60.8
ATR1091G013 Amborella trichopoda HOM05D006234 ORTHO05D007813 3.2e-15 86.7 132 42.4
PRCOL_00003688 Prasinoderma coloniale HOM05D001043 ORTHO05D006432 5.5e-15 85.9 107 41.1
Actinidia19102 Actinidia chinensis HOM05D006234 ORTHO05D007813 9.4e-15 85.1 128 45.3
arahy.Tifrunner.gnm1.ann1.AH97YV Arachis hypogaea HOM05D006234 ORTHO05D007813 1.4e-13 81.3 55 69.1
RcHm_v2.0_Chr6g0279701 Rosa chinensis HOM05D006234 ORTHO05D007813 6.3e-11 72.4 53 75.5
Lalb_Chr08g0236581 Lupinus albus HOM05D006234 ORTHO05D007813 2.4e-10 70.5 82 53.7
Manes.11G123700 Manihot esculenta HOM05D001043 ORTHO05D006432 1.0e-08 65.1 138 32.6
CSS0043871 Camellia sinensis var. sinensis HOM05D001043 ORTHO05D006432 2.9e-08 63.5 150 32.7
ECA240G3866 Erigeron canadensis HOM05D001043 ORTHO05D006432 1.1e-07 61.6 140 30.0
PSO832G3319 Papaver somniferum HOM05D001043 ORTHO05D006432 2.5e-07 60.5 139 30.9
PSO210G3503 Papaver somniferum HOM05D001043 ORTHO05D006432 3.2e-07 60.1 137 31.4
Potri.017G027000 Populus trichocarpa HOM05D001043 ORTHO05D006432 5.5e-07 59.3 110 32.7
CSS0016711 Camellia sinensis var. sinensis HOM05D001043 ORTHO05D006432 7.2e-07 58.9 123 33.3
Cpa.g.sc685.1 Carica papaya HOM05D006234 ORTHO05D007813 1.2e-06 58.2 109 42.2
Glyma.12G051100 Glycine max HOM05D001043 ORTHO05D006432 1.2e-06 58.2 112 35.7
AUR62023842 Chenopodium quinoa HOM05D001043 ORTHO05D006432 1.6e-06 57.8 136 27.9
Sabra07G0106300 Salix brachista HOM05D001043 ORTHO05D006432 1.6e-06 57.8 112 31.2
SalBow3G0890 Salvia bowleyana HOM05D001251 ORTHO05D007813 1.6e-06 57.8 30 83.3
Atru.chr4.1261 Acer truncatum HOM05D001043 ORTHO05D006432 2.7e-06 57.0 116 33.6
HanXRQChr03g0092911 Helianthus annuus HOM05D001043 ORTHO05D006432 2.7e-06 57.0 139 30.9
PGR142G3303 Punica granatum HOM05D001043 ORTHO05D006432 6.1e-06 55.8 136 30.9
Hund12412 Selenicereus undatus HOM05D001043 ORTHO05D006432 7.9e-06 55.5 134 28.4


User provided reference genes

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