Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_5g05200 Fragaria vesca HOM05D006935 ORTHO05D008944 4.4e-164 581.3 299 100.0
RcHm_v2.0_Chr7g0193711 Rosa chinensis HOM05D006935 ORTHO05D008944 1.0e-152 543.5 299 92.3
FAN04G2667 Fragaria x ananassa HOM05D006935 ORTHO05D008944 8.9e-149 530.4 287 96.5
FAN18G4193 Fragaria x ananassa HOM05D006935 ORTHO05D004872 2.2e-147 525.8 288 95.1
MD14G1182500 Malus domestica HOM05D006935 ORTHO05D008944 9.9e-132 473.8 305 82.3
Ciclev10021410m.g Citrus clementina HOM05D006935 ORTHO05D008944 9.9e-124 447.2 280 80.0
GSVIVG01007766001 Vitis vinifera HOM05D006935 ORTHO05D008944 2.9e-123 445.7 273 81.7
QL10p011920 Quercus lobata HOM05D006935 ORTHO05D008944 1.4e-122 443.4 303 75.9
Eucgr.B00368 Eucalyptus grandis HOM05D006935 ORTHO05D008944 3.2e-122 442.2 269 83.6
PGR083G2867 Punica granatum HOM05D006935 ORTHO05D008944 5.4e-122 441.4 297 77.4
Haze_07457 Corylus avellana HOM05D006935 ORTHO05D008944 9.3e-122 440.7 308 74.7
Atru.chr9.2451 Acer truncatum HOM05D006935 ORTHO05D008944 2.7e-121 439.1 294 76.9
CiPaw.11G027700 Carya illinoinensis HOM05D006935 ORTHO05D008944 3.5e-121 438.7 286 77.6
Cpa.g.sc124.48 Carica papaya HOM05D006935 ORTHO05D008944 6.0e-121 438.0 292 77.1
Actinidia19311 Actinidia chinensis HOM05D006935 ORTHO05D008944 5.1e-120 434.9 280 77.9
HanXRQChr16g0517271 Helianthus annuus HOM05D006935 ORTHO05D008944 8.7e-120 434.1 309 72.5
Thecc.03G010500 Theobroma cacao HOM05D006935 ORTHO05D008944 1.1e-119 433.7 300 75.7
Cc04_g13740 Coffea canephora HOM05D006935 ORTHO05D008944 1.5e-119 433.3 317 70.3
Manes.06G104000 Manihot esculenta HOM05D006935 ORTHO05D008944 2.5e-119 432.6 303 73.9
TWI81G0925 Tripterygium wilfordii HOM05D006935 ORTHO05D008944 2.5e-119 432.6 298 74.8
TWI81G0947 Tripterygium wilfordii HOM05D006935 ORTHO05D008944 2.5e-119 432.6 298 74.8
CSS0041391 Camellia sinensis var. sinensis HOM05D006935 ORTHO05D008944 4.3e-119 431.8 301 73.4
Sopen03g033350 Solanum pennellii HOM05D006935 ORTHO05D008944 2.1e-118 429.5 268 78.4
CANSAT80G0279 Cannabis sativa HOM05D006935 ORTHO05D008944 2.8e-118 429.1 249 85.9
Duzib068G1137 Durio zibethinus HOM05D006935 ORTHO05D008944 4.8e-118 428.3 304 76.0
Sabra15G0098700 Salix brachista HOM05D006935 ORTHO05D008944 4.8e-118 428.3 299 73.9
Lsat_1_v5_gn_5_17180 Lactuca sativa HOM05D006935 ORTHO05D008944 8.1e-118 427.6 310 71.0
FAN08G3443 Fragaria x ananassa HOM05D006935 ORTHO05D004872 1.1e-117 427.2 235 95.3
MSTRG.11442 Avicennia marina HOM05D006935 ORTHO05D008944 1.4e-117 426.8 310 70.3
PGSC0003DMG400024494 Solanum tuberosum HOM05D006935 ORTHO05D008944 1.8e-117 426.4 271 78.6
COL.COLO4_04599 Corchorus olitorius HOM05D006935 ORTHO05D008944 3.1e-117 425.6 301 74.8
vmacro19376 Vaccinium macrocarpon HOM05D006935 ORTHO05D008944 4.0e-117 425.2 279 75.6
Nn4g22789 Nelumbo nucifera HOM05D006935 ORTHO05D008944 2.0e-116 422.9 301 73.1
Glyma.05G036900 Glycine max HOM05D006935 ORTHO05D008944 2.6e-116 422.5 285 76.1
CsaV3_1G008420 Cucumis sativus L. HOM05D006935 ORTHO05D008944 3.4e-116 422.2 260 80.4
Potri.015G074700 Populus trichocarpa HOM05D006935 ORTHO05D008944 7.6e-116 421.0 265 80.4
SalBow5G1860 Salvia bowleyana HOM05D006935 ORTHO05D008944 3.8e-115 418.7 297 71.7
SGA_v2.0_scaffold90G27953 Striga asiatica HOM05D006935 ORTHO05D008944 3.8e-115 418.7 278 75.2
Rhsim08G0171100 Rhododendron simsii HOM05D006935 ORTHO05D008944 4.9e-115 418.3 290 73.4
Gohir.D11G001000 Gossypium hirsutum HOM05D006935 ORTHO05D008944 2.4e-114 416.0 265 77.7
Gorai.007G001900 Gossypium raimondii HOM05D006935 ORTHO05D008944 4.2e-114 415.2 299 71.2
Lalb_Chr07g0182691 Lupinus albus HOM05D006935 ORTHO05D008944 5.4e-114 414.8 266 77.4
Solyc03g114250.4 Solanum lycopersicum HOM05D006935 ORTHO05D008944 5.4e-114 414.8 269 76.6
Cfa019105 Carpinus fangiana HOM05D006935 ORTHO05D004872 9.3e-114 414.1 297 73.4
VMungo1215G2532 Vigna mungo HOM05D006935 ORTHO05D008944 9.3e-114 414.1 250 82.4
Migut.I00022 Erythranthe guttata HOM05D006935 ORTHO05D008944 1.6e-113 413.3 315 69.5
THA.LOC104798977 Tarenaya hassleriana HOM05D006935 ORTHO05D008944 1.6e-113 413.3 274 75.9
ECA236G1157 Erigeron canadensis HOM05D006935 ORTHO05D008944 2.1e-113 412.9 281 75.4
Carub.0008s2355 Capsella rubella HOM05D006935 ORTHO05D008944 2.7e-113 412.5 263 77.6
Gohir.A11G001400 Gossypium hirsutum HOM05D006935 ORTHO05D008944 2.7e-113 412.5 265 77.0
Nitab4.5_0005862g0020 Nicotiana tabacum HOM05D006935 ORTHO05D008944 3.5e-113 412.1 342 64.3
AT5G62840 Arabidopsis thaliana HOM05D006935 ORTHO05D008944 6.0e-113 411.4 295 70.8
Phvul.003G199600 Phaseolus vulgaris HOM05D006935 ORTHO05D008944 6.0e-113 411.4 285 73.7
AL8G39840 Arabidopsis lyrata HOM05D006935 ORTHO05D008944 7.9e-113 411.0 263 76.8
Lj4g0026943 Lotus japonicus HOM05D006935 ORTHO05D008944 1.3e-112 410.2 286 74.1
Sc12g0005390 Simmondsia chinensis HOM05D006935 ORTHO05D008944 3.9e-112 408.7 295 71.5
TPR.G37522 Trifolium pratense HOM05D006935 ORTHO05D008944 5.1e-112 408.3 238 82.8
Aa31LG11G860 Aethionema arabicum HOM05D006935 ORTHO05D008944 8.7e-112 407.5 293 71.0
TAR622G0425 Trochodendron aralioides HOM05D006935 ORTHO05D008944 1.5e-111 406.8 230 86.5
Aqoxy3G02966 Aquilegia oxysepala HOM05D006935 ORTHO05D008944 1.9e-111 406.4 283 72.8
BcaC01g02525 Brassica carinata HOM05D006935 ORTHO05D008944 5.6e-111 404.8 298 71.1
Sp2g25990 Schrenkiella parvula HOM05D006935 ORTHO05D008944 5.6e-111 404.8 263 75.7
Thhalv10004703m.g Eutrema salsugineum HOM05D006935 ORTHO05D008944 7.4e-111 404.4 265 75.5
C03p63900 Brassica napus HOM05D006935 ORTHO05D008944 2.1e-110 402.9 294 71.8
BolC3t18645H Brassica oleracea HOM05D006935 ORTHO05D008944 2.1e-110 402.9 294 71.8
MELO3C002259.2 Cucumis melo HOM05D006935 ORTHO05D008944 2.1e-110 402.9 256 79.3
MBI16_g05651_MAGBIO Magnolia biondii HOM05D006935 ORTHO05D008944 2.8e-110 402.5 230 84.3
MBI16_g32800_MAGBIO Magnolia biondii HOM05D006935 ORTHO05D008944 4.8e-110 401.7 293 71.0
CARHR276620 Cardamine hirsuta HOM05D006935 ORTHO05D008944 6.2e-110 401.4 295 69.5
ClCG01G013080 Citrullus lanatus HOM05D006935 ORTHO05D008944 6.2e-110 401.4 290 72.4
BcaB02g09696 Brassica carinata HOM05D006935 ORTHO05D008944 8.1e-110 401.0 299 70.2
BraA06t25905Z Brassica rapa HOM05D006935 ORTHO05D008944 8.1e-110 401.0 263 75.7
A06p29590 Brassica napus HOM05D006935 ORTHO05D008944 1.1e-109 400.6 263 75.3
Medtr4g106970 Medicago truncatula HOM05D006935 ORTHO05D008944 2.4e-109 399.4 241 80.1
Ah.02g110460 Amaranthus hybridus HOM05D006935 ORTHO05D008944 4.0e-109 398.7 285 68.8
unitig_749.g13472 Utricularia gibba HOM05D006935 ORTHO05D008944 1.5e-108 396.7 280 70.7
Nitab4.5_0000852g0050 Nicotiana tabacum HOM05D006935 ORTHO05D008944 9.9e-108 394.0 301 68.8
PSO302G0172 Papaver somniferum HOM05D006935 ORTHO05D008944 6.0e-105 384.8 299 65.9
EL10Ac5g10748 Beta vulgaris HOM05D006935 ORTHO05D008944 1.8e-104 383.3 228 80.7
AUR62008221 Chenopodium quinoa HOM05D006935 ORTHO05D008944 2.3e-104 382.9 239 79.5
Zm00001eb359580 Zea mays HOM05D006935 ORTHO05D008944 2.8e-102 375.9 292 66.4
Oeu016368.1 Olea europaea HOM05D006935 ORTHO05D008944 3.7e-102 375.6 312 64.7
Hund09430 Selenicereus undatus HOM05D006935 ORTHO05D004872 1.1e-101 374.0 257 72.4
Os01g0660900 Oryza sativa ssp. japonica HOM05D006935 ORTHO05D008944 2.4e-101 372.9 236 76.7
Dinv09149 Davidia involucrata HOM05D006935 ORTHO05D008944 4.0e-101 372.1 272 71.7
HPP92_024712 Vanilla planifolia HOM05D006935 ORTHO05D008944 1.2e-100 370.5 300 64.7
Peaxi162Scf00017g02821 Petunia axillaris HOM05D006935 ORTHO05D008944 1.4e-98 363.6 268 71.3
CAN.G781.17 Capsicum annuum HOM05D006935 ORTHO05D008944 2.5e-98 362.8 268 72.4
AUR62030975 Chenopodium quinoa HOM05D006935 ORTHO05D008944 5.5e-98 361.7 232 77.2
CDE04G2457 Ceratophyllum demersum HOM05D005049 ORTHO05D004872 3.9e-96 355.5 301 63.8
SEGI_12501 Sequoiadendron giganteum HOM05D006935 ORTHO05D008944 8.7e-96 354.4 238 71.4
Pp3c16_7000 Physcomitrium patens HOM05D006935 ORTHO05D008944 3.8e-91 339.0 239 69.0
Psat4g057680 Pisum sativum HOM05D006935 ORTHO05D008944 8.5e-91 337.8 244 72.5
Ca_21910_v3 Cicer arietinum L. HOM05D006935 ORTHO05D008944 2.1e-89 333.2 250 68.4
Mapoly0091s0071 Marchantia polymorpha HOM05D006935 ORTHO05D008944 9.1e-85 317.8 248 64.1
Peaxi162Scf00017g02830 Petunia axillaris HOM05D006935 ORTHO05D008944 3.8e-83 312.4 209 76.6
ATR0730G238 Amborella trichopoda HOM05D006935 ORTHO05D008944 3.2e-82 309.3 322 54.7
Prupe.5G175000 Prunus persica HOM05D006935 ORTHO05D008944 4.2e-82 308.9 304 59.9
SMO141G0200 Selaginella moellendorffii HOM05D006935 ORTHO05D008944 2.1e-73 280.0 182 73.6
AagrBONN_evm.TU.Sc2ySwM_117.38 Anthoceros agrestis HOM05D006935 ORTHO05D008944 6.7e-72 275.0 198 68.2
EL10Ac5g10761 Beta vulgaris HOM05D006935 ORTHO05D008944 8.8e-72 274.6 219 65.3
Hma1.2p1_0176F.1_g077560 Hydrangea macrophylla HOM05D006935 ORTHO05D008944 2.2e-59 233.4 174 70.1
Cre06.g272300 Chlamydomonas reinhardtii HOM05D006935 ORTHO05D008944 5.5e-58 228.8 266 50.4
Sed0005822 Sechium edule HOM05D006935 ORTHO05D008944 1.6e-57 227.3 133 82.0
arahy.Tifrunner.gnm1.ann1.0F4FSZ Arachis hypogaea HOM05D006935 ORTHO05D008944 1.3e-51 207.6 113 85.0
arahy.Tifrunner.gnm1.ann1.209TGD Arachis hypogaea HOM05D006935 ORTHO05D008944 2.9e-51 206.5 115 82.6
Actinidia20183 Actinidia chinensis HOM05D006935 ORTHO05D008944 1.5e-47 194.1 117 83.8
Psat4g057640 Pisum sativum HOM05D006935 ORTHO05D008944 3.5e-44 183.0 218 48.6
Lj5C123T7 Lonicera japonica HOM05D006935 ORTHO05D008944 9.5e-42 174.9 114 75.4
MD06G1175700 Malus domestica HOM05D006935 ORTHO05D008944 6.4e-38 162.2 221 47.1
Lj5C123T8 Lonicera japonica HOM05D006935 ORTHO05D008944 4.4e-31 139.4 77 84.4
PRCOL_00001554 Prasinoderma coloniale HOM05D006935 ORTHO05D008944 2.0e-23 114.0 210 37.1
MCO16G270 Micromonas commoda HOM05D006935 ORTHO05D008944 1.1e-18 98.2 245 33.5
Actinidia01759 Actinidia chinensis HOM05D006935 ORTHO05D008944 3.1e-16 90.1 63 73.0
Hund09427 Selenicereus undatus HOM05D006935 ORTHO05D008944 4.8e-09 66.2 43 72.1
Cre13.g564000 Chlamydomonas reinhardtii HOM05D006820 ORTHO05D008526 3.1e-08 63.5 203 30.5
Os04g0224600 Oryza sativa ssp. japonica HOM05D006820 ORTHO05D008526 2.6e-07 60.5 242 27.7
Nn4g24775 Nelumbo nucifera HOM05D006935 ORTHO05D008944 7.6e-07 58.9 33 72.7


User provided reference genes

Program Settings