Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_5g04930 Fragaria vesca HOM05D007361 ORTHO05D009239 4.0e-73 278.1 151 100.0
FAN18G1776 Fragaria x ananassa HOM05D007361 ORTHO05D009239 4.0e-73 278.1 151 100.0
FAN13G1516 Fragaria x ananassa HOM05D007361 ORTHO05D009239 1.5e-72 276.2 151 99.3
FAN18G2902 Fragaria x ananassa HOM05D007361 ORTHO05D009239 2.2e-71 272.3 151 98.0
RcHm_v2.0_Chr7g0194141 Rosa chinensis HOM05D007361 ORTHO05D009239 4.9e-63 244.6 152 79.6
Prupe.5G122800 Prunus persica HOM05D007361 ORTHO05D009239 7.9e-45 184.1 153 66.0
QL02p030053 Quercus lobata HOM05D007361 ORTHO05D009239 8.7e-36 154.1 157 59.9
Lj4g0006418 Lotus japonicus HOM05D007361 ORTHO05D009239 1.4e-33 146.7 148 54.7
Lalb_Chr09g0332251 Lupinus albus HOM05D007361 ORTHO05D009239 1.8e-33 146.4 146 63.0
Potri.001G089500 Populus trichocarpa HOM05D007361 ORTHO05D009239 3.1e-33 145.6 149 55.0
Sabra01G0065600 Salix brachista HOM05D007361 ORTHO05D009239 4.1e-33 145.2 147 62.6
CiPaw.12G081300 Carya illinoinensis HOM05D007361 ORTHO05D009239 5.3e-33 144.8 157 63.1
CANSAT21G1668 Cannabis sativa HOM05D007361 ORTHO05D009239 6.9e-33 144.4 151 51.7
GSVIVG01019560001 Vitis vinifera HOM05D007361 ORTHO05D009239 6.9e-33 144.4 75 81.3
Gohir.A12G237900 Gossypium hirsutum HOM05D007361 ORTHO05D009239 9.1e-33 144.1 153 50.3
Gohir.D12G239000 Gossypium hirsutum HOM05D007361 ORTHO05D009239 2.0e-32 142.9 153 49.7
Potri.003G141700 Populus trichocarpa HOM05D007361 ORTHO05D009239 2.0e-32 142.9 152 61.8
Gorai.008G256100 Gossypium raimondii HOM05D007361 ORTHO05D009239 3.4e-32 142.1 153 49.7
Manes.01G052200 Manihot esculenta HOM05D007361 ORTHO05D009239 3.4e-32 142.1 154 62.3
arahy.Tifrunner.gnm1.ann1.F7VJVA Arachis hypogaea HOM05D007361 ORTHO05D009239 7.7e-32 141.0 148 59.5
Nn1g00257 Nelumbo nucifera HOM05D007361 ORTHO05D009239 1.3e-31 140.2 78 80.8
Atru.chr9.1927 Acer truncatum HOM05D001889 ORTHO05D009239 2.2e-31 139.4 165 55.8
Cpa.g.sc634.2 Carica papaya HOM05D007361 ORTHO05D009239 2.2e-31 139.4 82 72.0
Thecc.03G300700 Theobroma cacao HOM05D007361 ORTHO05D009239 3.8e-31 138.7 76 77.6
Ciclev10024054m.g Citrus clementina HOM05D007361 ORTHO05D009239 5.0e-31 138.3 108 61.1
Dinv37514 Davidia involucrata HOM05D007361 ORTHO05D009239 5.0e-31 138.3 82 75.6
ClCG07G011490 Citrullus lanatus HOM05D007361 ORTHO05D009239 1.4e-30 136.7 152 58.6
Duzib205G2046 Durio zibethinus HOM05D007361 ORTHO05D009239 1.9e-30 136.3 153 49.0
Eucgr.D01759 Eucalyptus grandis HOM05D007361 ORTHO05D009239 1.9e-30 136.3 66 87.9
Actinidia27311 Actinidia chinensis HOM05D007361 ORTHO05D009239 2.5e-30 136.0 70 81.4
Sabra03G0102300 Salix brachista HOM05D007361 ORTHO05D009239 2.5e-30 136.0 66 89.4
MELO3C016276.2 Cucumis melo HOM05D007361 ORTHO05D009239 3.2e-30 135.6 152 56.6
Aqoxy5G04283 Aquilegia oxysepala HOM05D007361 ORTHO05D009239 4.2e-30 135.2 146 49.3
TWI60G0282 Tripterygium wilfordii HOM05D007361 ORTHO05D009239 5.5e-30 134.8 150 52.0
TWI81G0394 Tripterygium wilfordii HOM05D007361 ORTHO05D009239 5.5e-30 134.8 153 50.3
arahy.Tifrunner.gnm1.ann1.LM2PGP Arachis hypogaea HOM05D007361 ORTHO05D009239 1.2e-29 133.7 165 47.9
Sc01g0010390 Simmondsia chinensis HOM05D007361 ORTHO05D009239 1.6e-29 133.3 72 80.6
CsaV3_4G006730 Cucumis sativus L. HOM05D007361 ORTHO05D009239 2.1e-29 132.9 151 52.3
Os01g0235100 Oryza sativa ssp. japonica HOM05D007361 ORTHO05D009239 2.1e-29 132.9 71 78.9
Ah.12g052700 Amaranthus hybridus HOM05D007361 ORTHO05D009239 2.7e-29 132.5 71 81.7
EL10Ac5g12938 Beta vulgaris HOM05D007361 ORTHO05D009239 2.7e-29 132.5 71 83.1
AUR62019861 Chenopodium quinoa HOM05D007361 ORTHO05D009239 3.6e-29 132.1 83 71.1
PGR031G2691 Punica granatum HOM05D007361 ORTHO05D009239 3.6e-29 132.1 145 49.7
SalBow8G1606 Salvia bowleyana HOM05D007361 ORTHO05D009239 3.6e-29 132.1 70 78.6
PSO782G1801 Papaver somniferum HOM05D007361 ORTHO05D009239 4.6e-29 131.7 76 73.7
HPP92_002926 Vanilla planifolia HOM05D007361 ORTHO05D009239 4.6e-29 131.7 69 81.2
TAR629G1962 Trochodendron aralioides HOM05D007361 ORTHO05D009239 7.9e-29 131.0 71 78.9
Ca_17469_v3 Cicer arietinum L. HOM05D007361 ORTHO05D009239 1.0e-28 130.6 144 51.4
HanXRQChr17g0534961 Helianthus annuus HOM05D007361 ORTHO05D009239 1.0e-28 130.6 132 59.8
Hund14207 Selenicereus undatus HOM05D007361 ORTHO05D009239 1.0e-28 130.6 72 77.8
Sed0017120 Sechium edule HOM05D007361 ORTHO05D009239 1.4e-28 130.2 153 50.3
BcaC02g08893 Brassica carinata HOM05D007361 ORTHO05D009239 1.8e-28 129.8 68 80.9
C04p49390 Brassica napus HOM05D007361 ORTHO05D009239 1.8e-28 129.8 68 80.9
Carub.0007s3327 Capsella rubella HOM05D007361 ORTHO05D009239 1.8e-28 129.8 68 80.9
AT5G42070 Arabidopsis thaliana HOM05D007361 ORTHO05D009239 2.3e-28 129.4 114 55.3
CARHR212500 Cardamine hirsuta HOM05D007361 ORTHO05D009239 2.3e-28 129.4 73 75.3
Haze_09090 Corylus avellana HOM05D007361 ORTHO05D009239 2.3e-28 129.4 150 58.7
vmacro11341 Vaccinium macrocarpon HOM05D007361 ORTHO05D009239 2.3e-28 129.4 72 76.4
MSTRG.1799 Avicennia marina HOM05D007361 ORTHO05D009239 3.0e-28 129.0 72 73.6
SEGI_33878 Sequoiadendron giganteum HOM05D007361 ORTHO05D009239 3.9e-28 128.6 70 78.6
A07p21120 Brassica napus HOM05D007361 ORTHO05D009239 5.1e-28 128.3 68 79.4
BolC4t26525H Brassica oleracea HOM05D000331 ORTHO05D000732 5.1e-28 128.3 68 79.4
BraA07t29798Z Brassica rapa HOM05D007361 ORTHO05D009239 5.1e-28 128.3 68 79.4
Actinidia22174 Actinidia chinensis HOM05D005144 ORTHO05D006112 6.7e-28 127.9 79 72.2
Medtr8g099615 Medicago truncatula HOM05D007361 ORTHO05D009239 6.7e-28 127.9 79 70.9
Peaxi162Scf00074g00624 Petunia axillaris HOM05D007361 ORTHO05D009239 6.7e-28 127.9 78 75.6
BcaC08g44581 Brassica carinata HOM05D007361 ORTHO05D009239 8.8e-28 127.5 68 79.4
C06p20480 Brassica napus HOM05D007361 ORTHO05D009239 8.8e-28 127.5 68 79.4
BolC6t37229H Brassica oleracea HOM05D000331 ORTHO05D000732 8.8e-28 127.5 68 79.4
DCAR_006523 Daucus carota HOM05D007361 ORTHO05D009239 8.8e-28 127.5 65 81.5
Thhalv10026457m.g Eutrema salsugineum HOM05D007361 ORTHO05D009239 8.8e-28 127.5 67 80.6
Phvul.002G299900 Phaseolus vulgaris HOM05D007361 ORTHO05D009239 8.8e-28 127.5 134 55.2
THA.LOC104817582 Tarenaya hassleriana HOM05D007361 ORTHO05D009239 1.1e-27 127.1 89 64.0
Aa31LG9G130 Aethionema arabicum HOM05D007361 ORTHO05D009239 1.5e-27 126.7 72 76.4
ECA246G3595 Erigeron canadensis HOM05D007361 ORTHO05D009239 2.0e-27 126.3 69 76.8
Glyma.08G024100 Glycine max HOM05D007361 ORTHO05D009239 2.0e-27 126.3 125 53.6
Sp7g00060 Schrenkiella parvula HOM05D007361 ORTHO05D009239 2.0e-27 126.3 68 77.9
TPR.G3427 Trifolium pratense HOM05D007361 ORTHO05D009239 2.6e-27 125.9 78 73.1
BcaB02g07865 Brassica carinata HOM05D007361 ORTHO05D009239 3.3e-27 125.6 67 79.1
CDE10G0162 Ceratophyllum demersum HOM05D007361 ORTHO05D009239 3.3e-27 125.6 67 76.1
CDE10G0255 Ceratophyllum demersum HOM05D007361 ORTHO05D009239 3.3e-27 125.6 67 76.1
Psat7g024200 Pisum sativum HOM05D007361 ORTHO05D009239 3.3e-27 125.6 78 70.5
Solyc08g082570.4 Solanum lycopersicum HOM05D007361 ORTHO05D009239 3.3e-27 125.6 82 69.5
Sopen08g030820 Solanum pennellii HOM05D007361 ORTHO05D009239 3.3e-27 125.6 82 69.5
Lj2C163G16 Lonicera japonica HOM05D005144 ORTHO05D006112 4.4e-27 125.2 65 83.1
ATR0602G025 Amborella trichopoda HOM05D007361 ORTHO05D009239 7.4e-27 124.4 60 86.7
PGSC0003DMG400012265 Solanum tuberosum HOM05D007361 ORTHO05D009239 7.4e-27 124.4 71 76.1
CSS0025387 Camellia sinensis var. sinensis HOM05D007361 ORTHO05D009239 9.7e-27 124.0 64 81.2
Glyma.05G218000 Glycine max HOM05D007361 ORTHO05D009239 9.7e-27 124.0 67 79.1
Nitab4.5_0000798g0080 Nicotiana tabacum HOM05D007361 ORTHO05D009239 9.7e-27 124.0 80 73.8
Cc08_g16280 Coffea canephora HOM05D007361 ORTHO05D009239 1.3e-26 123.6 72 70.8
Nitab4.5_0008496g0040 Nicotiana tabacum HOM05D007361 ORTHO05D009239 2.2e-26 122.9 73 75.3
SGA_v2.0_scaffold111G31398 Striga asiatica HOM05D007361 ORTHO05D009239 2.2e-26 122.9 80 67.5
CAN.G567.14 Capsicum annuum HOM05D007361 ORTHO05D009239 2.8e-26 122.5 82 67.1
Migut.E01281 Erythranthe guttata HOM05D007361 ORTHO05D009239 6.3e-26 121.3 82 64.6
A04p15160 Brassica napus HOM05D007361 ORTHO05D009239 8.2e-26 120.9 67 77.6
FAN08G1879 Fragaria x ananassa HOM05D001889 ORTHO05D001853 8.2e-26 120.9 79 98.7
AagrBONN_evm.TU.Sc2ySwM_362.1194 Anthoceros agrestis HOM05D007361 ORTHO05D009239 1.1e-25 120.6 81 66.7
unitig_0.g323 Utricularia gibba HOM05D007361 ORTHO05D009239 2.0e-24 116.3 74 67.6
SMO340G0222 Selaginella moellendorffii HOM05D007361 ORTHO05D009239 3.4e-24 115.5 66 74.2
Rhsim02G0246000 Rhododendron simsii HOM05D007361 ORTHO05D009239 5.9e-24 114.8 71 69.0
Pp3c20_23090 Physcomitrium patens HOM05D007361 ORTHO05D009239 1.0e-23 114.0 91 59.3
Mapoly0039s0013 Marchantia polymorpha HOM05D007361 ORTHO05D009239 1.3e-23 113.6 91 58.2
CBR_g8730 Chara braunii HOM05D003343 ORTHO05D003787 3.3e-19 99.0 63 66.7
Lsat_1_v5_gn_3_11260 Lactuca sativa HOM05D007361 ORTHO05D009239 2.8e-18 95.9 51 76.5
MCO14G090 Micromonas commoda HOM05D007361 ORTHO05D009239 7.7e-16 87.8 83 47.0
Cre02.g074100 Chlamydomonas reinhardtii HOM05D007361 ORTHO05D009239 3.2e-14 82.4 67 49.3


User provided reference genes

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