Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_5g04680 Fragaria vesca HOM05D005115 ORTHO05D005703 4.7e-109 397.9 204 100.0
FAN18G1353 Fragaria x ananassa HOM05D005115 ORTHO05D005703 6.4e-106 387.5 204 98.5
FAN13G0546 Fragaria x ananassa HOM05D005115 ORTHO05D005703 1.0e-100 370.2 204 95.1
FAN13G3196 Fragaria x ananassa HOM05D005115 ORTHO05D005703 1.0e-100 370.2 204 95.1
RcHm_v2.0_Chr7g0194701 Rosa chinensis HOM05D005115 ORTHO05D005703 2.3e-84 315.8 188 86.7
Prupe.5G120800 Prunus persica HOM05D005115 ORTHO05D005703 1.4e-76 290.0 207 77.8
Gohir.D09G185000 Gossypium hirsutum HOM05D005115 ORTHO05D005703 5.1e-55 218.4 206 63.1
Glyma.11G017800 Glycine max HOM05D005115 ORTHO05D005703 5.6e-54 214.9 204 62.3
Phvul.002G164100 Phaseolus vulgaris HOM05D005115 ORTHO05D005703 2.8e-53 212.6 205 62.0
Gohir.A09G190300 Gossypium hirsutum HOM05D005115 ORTHO05D005703 1.1e-52 210.7 210 61.0
Cfa011998 Carpinus fangiana HOM05D005115 ORTHO05D005703 4.0e-52 208.8 205 60.5
Gorai.006G207500 Gossypium raimondii HOM05D005115 ORTHO05D005703 9.0e-52 207.6 209 60.8
Glyma.01G225300 Glycine max HOM05D005115 ORTHO05D005703 1.2e-51 207.2 205 61.5
Dinv37526 Davidia involucrata HOM05D005115 ORTHO05D005703 4.5e-51 205.3 204 61.3
Duzib068G0330 Durio zibethinus HOM05D005115 ORTHO05D005703 2.2e-50 203.0 206 63.1
Thecc.03G298900 Theobroma cacao HOM05D005115 ORTHO05D005703 6.5e-50 201.4 210 61.0
TAR375G0477 Trochodendron aralioides HOM05D005115 ORTHO05D005703 7.1e-49 198.0 203 59.1
VMungo1215G1874 Vigna mungo HOM05D005115 ORTHO05D005703 9.3e-49 197.6 204 58.8
Duzib205G0660 Durio zibethinus HOM05D005115 ORTHO05D005703 3.5e-48 195.7 206 59.7
Rhsim02G0244500 Rhododendron simsii HOM05D005115 ORTHO05D005703 1.0e-47 194.1 208 59.6
Solyc08g008350.3 Solanum lycopersicum HOM05D005115 ORTHO05D005703 1.3e-47 193.7 205 59.0
Duzib084G1297 Durio zibethinus HOM05D005115 ORTHO05D005703 1.8e-47 193.4 207 59.4
TAR375G0257 Trochodendron aralioides HOM05D005115 ORTHO05D005703 3.0e-47 192.6 203 58.1
CANSAT21G0870 Cannabis sativa HOM05D005115 ORTHO05D005703 8.7e-47 191.0 228 54.4
Peaxi162Scf00102g01844 Petunia axillaris HOM05D005115 ORTHO05D005703 2.5e-46 189.5 204 58.3
Cpa.g.sc79.29 Carica papaya HOM05D005115 ORTHO05D005703 5.7e-46 188.3 205 58.5
Cc08_g16140 Coffea canephora HOM05D005115 ORTHO05D005703 7.4e-46 188.0 204 58.3
Dinv38826 Davidia involucrata HOM05D007126 ORTHO05D008974 7.4e-46 188.0 197 57.9
Nn3g19002 Nelumbo nucifera HOM05D005115 ORTHO05D005703 9.6e-46 187.6 206 60.2
AUR62010847 Chenopodium quinoa HOM05D000034 ORTHO05D005703 1.3e-45 187.2 202 56.4
arahy.Tifrunner.gnm1.ann1.M14U5A Arachis hypogaea HOM05D005115 ORTHO05D005703 6.3e-45 184.9 204 58.8
arahy.Tifrunner.gnm1.ann1.V4I9JE Arachis hypogaea HOM05D005115 ORTHO05D005703 6.3e-45 184.9 204 58.8
Ca_17482_v3 Cicer arietinum L. HOM05D005115 ORTHO05D005703 6.3e-45 184.9 208 55.8
Ca_17506_v3 Cicer arietinum L. HOM05D005115 ORTHO05D005703 6.3e-45 184.9 208 55.8
LjContig00312_ERROPOS870357g0004531 Lotus japonicus HOM05D005115 ORTHO05D005703 8.2e-45 184.5 204 56.9
Sabra01G0067300 Salix brachista HOM05D005115 ORTHO05D005703 1.8e-44 183.3 197 56.9
Gohir.A11G025300 Gossypium hirsutum HOM05D005115 ORTHO05D005703 3.1e-44 182.6 206 58.3
TWI15G1136 Tripterygium wilfordii HOM05D005115 ORTHO05D005703 5.3e-44 181.8 204 56.9
CiPaw.11G120600 Carya illinoinensis HOM05D005115 ORTHO05D005703 9.0e-44 181.0 206 58.3
TWI81G0084 Tripterygium wilfordii HOM05D005115 ORTHO05D005703 1.5e-43 180.3 206 58.7
Gohir.D11G024900 Gossypium hirsutum HOM05D005115 ORTHO05D005703 2.0e-43 179.9 205 57.1
CsaV3_4G006640 Cucumis sativus L. HOM05D005115 ORTHO05D005703 4.5e-43 178.7 202 54.5
Gorai.007G026700 Gossypium raimondii HOM05D005115 ORTHO05D005703 4.5e-43 178.7 205 56.6
Potri.001G090900 Populus trichocarpa HOM05D005115 ORTHO05D005703 4.5e-43 178.7 199 55.3
vmacro11350 Vaccinium macrocarpon HOM05D005115 ORTHO05D005703 4.5e-43 178.7 246 50.8
Hma1.2p1_0440F.1_g153350 Hydrangea macrophylla HOM05D005115 ORTHO05D005703 1.0e-42 177.6 179 59.2
Medtr8g099425 Medicago truncatula HOM05D005115 ORTHO05D005703 1.7e-42 176.8 208 55.3
Atru.chr9.1972 Acer truncatum HOM05D005115 ORTHO05D005703 2.2e-42 176.4 177 59.9
Atru.chr9.1986 Acer truncatum HOM05D005115 ORTHO05D005703 2.2e-42 176.4 177 59.9
ClCG07G011580 Citrullus lanatus HOM05D005115 ORTHO05D005703 2.9e-42 176.0 181 59.1
Potri.003G140700 Populus trichocarpa HOM05D005115 ORTHO05D005703 1.1e-41 174.1 198 53.5
CiPaw.12G082200 Carya illinoinensis HOM05D005115 ORTHO05D005703 1.4e-41 173.7 204 55.9
Sc22g0004980 Simmondsia chinensis HOM05D005115 ORTHO05D005703 1.4e-41 173.7 202 55.0
TPR.G3414 Trifolium pratense HOM05D005115 ORTHO05D005703 1.9e-41 173.3 201 55.7
ECA240G1127 Erigeron canadensis HOM05D005115 ORTHO05D005703 3.2e-41 172.6 203 55.7
Aqoxy7G00093 Aquilegia oxysepala HOM05D005115 ORTHO05D005703 2.1e-40 169.9 204 57.4
HanXRQChr03g0083441 Helianthus annuus HOM05D005115 ORTHO05D005703 6.1e-40 168.3 195 54.9
Actinidia22166 Actinidia chinensis HOM05D005115 ORTHO05D005703 1.3e-39 167.2 194 56.7
Sed0016945 Sechium edule HOM05D005115 ORTHO05D005703 1.8e-39 166.8 207 54.6
PGR042G1877 Punica granatum HOM05D005115 ORTHO05D005703 2.3e-39 166.4 201 54.7
HanXRQChr13g0415351 Helianthus annuus HOM05D005115 ORTHO05D005703 3.0e-39 166.0 192 54.2
Haze_09072 Corylus avellana HOM05D005115 ORTHO05D005703 5.1e-39 165.2 302 40.1
Manes.02G009400 Manihot esculenta HOM05D005115 ORTHO05D005703 5.1e-39 165.2 209 55.0
ECA240G3401 Erigeron canadensis HOM05D000003 ORTHO05D000004 6.7e-39 164.9 203 54.7
MD06G1108200 Malus domestica HOM05D005115 ORTHO05D005703 3.3e-38 162.5 101 81.2
Oeu055028.2 Olea europaea HOM05D005115 ORTHO05D005703 3.3e-38 162.5 246 45.1
EL10Ac5g12921 Beta vulgaris HOM05D005115 ORTHO05D005703 4.3e-38 162.2 255 48.2
Eucgr.D01748 Eucalyptus grandis HOM05D005115 ORTHO05D005703 1.6e-37 160.2 210 52.4
Nitab4.5_0002231g0060 Nicotiana tabacum HOM05D005115 ORTHO05D005703 2.2e-37 159.8 184 55.4
Hund14216 Selenicereus undatus HOM05D005115 ORTHO05D005703 1.1e-36 157.5 205 51.7
CDE04G3646 Ceratophyllum demersum HOM05D005115 ORTHO05D005703 1.4e-36 157.1 207 51.7
MBI06_g08472_MAGBIO Magnolia biondii HOM05D005115 ORTHO05D005703 1.4e-36 157.1 186 54.8
GSVIVG01019540001 Vitis vinifera HOM05D005115 ORTHO05D005703 1.8e-36 156.8 114 71.1
SalBow6G1704 Salvia bowleyana HOM05D005115 ORTHO05D005703 6.9e-36 154.8 264 42.0
SalBow8G0540 Salvia bowleyana HOM05D005115 ORTHO05D005703 6.9e-36 154.8 264 42.0
Nitab4.5_0007367g0090 Nicotiana tabacum HOM05D005115 ORTHO05D005703 1.5e-35 153.7 184 53.8
Thhalv10028955m.g Eutrema salsugineum HOM05D005115 ORTHO05D005703 5.9e-35 151.8 219 47.9
AUR62019846 Chenopodium quinoa HOM05D005115 ORTHO05D005703 1.3e-34 150.6 136 61.8
CSS0002161 Camellia sinensis var. sinensis HOM05D005115 ORTHO05D005703 5.0e-34 148.7 110 70.9
CSS0007380 Camellia sinensis var. sinensis HOM05D005115 ORTHO05D005703 5.0e-34 148.7 110 70.9
Lsat_1_v5_gn_6_83921 Lactuca sativa HOM05D005115 ORTHO05D005703 6.5e-34 148.3 203 49.3
PSO384G2123 Papaver somniferum HOM05D005115 ORTHO05D005703 8.5e-34 147.9 212 50.9
PGSC0003DMG400005793 Solanum tuberosum HOM05D005115 ORTHO05D005703 8.5e-34 147.9 113 69.9
TAR636G3146 Trochodendron aralioides HOM05D005115 ORTHO05D005703 1.1e-33 147.5 122 66.4
HPP92_002918 Vanilla planifolia HOM05D005115 ORTHO05D005703 1.4e-33 147.1 205 47.3
PGR031G1480 Punica granatum HOM05D005115 ORTHO05D005703 2.5e-33 146.4 199 47.7
Sopen08g004230 Solanum pennellii HOM05D005115 ORTHO05D005703 3.2e-33 146.0 113 67.3
Sed0001802 Sechium edule HOM05D005115 ORTHO05D005703 4.2e-33 145.6 206 51.5
CAN.G792.37 Capsicum annuum HOM05D005115 ORTHO05D005703 2.1e-32 143.3 113 66.4
PSO135G0387 Papaver somniferum HOM05D005115 ORTHO05D005703 3.6e-32 142.5 190 53.2
Carub.0006s2972 Capsella rubella HOM05D005115 ORTHO05D005703 4.6e-32 142.1 220 46.8
Migut.A00633 Erythranthe guttata HOM05D005115 ORTHO05D005703 1.8e-31 140.2 203 49.3
SGA_v2.0_scaffold144G35858 Striga asiatica HOM05D005474 ORTHO05D006551 3.0e-31 139.4 199 47.2
MSTRG.25681 Avicennia marina HOM05D005115 ORTHO05D005703 1.1e-30 137.5 107 69.2
Psat7g026000 Pisum sativum HOM05D005115 ORTHO05D005703 3.3e-30 136.0 112 65.2
CDE03G0211 Ceratophyllum demersum HOM05D005115 ORTHO05D005703 5.7e-30 135.2 158 52.5
COL.COLO4_10710 Corchorus olitorius HOM05D005115 ORTHO05D005703 1.7e-29 133.7 114 65.8
THA.LOC104815118 Tarenaya hassleriana HOM05D005115 ORTHO05D005703 2.8e-29 132.9 219 47.0
MELO3C016298.2 Cucumis melo HOM05D005115 ORTHO05D005703 4.8e-29 132.1 249 40.6
Hund11387 Selenicereus undatus HOM05D005115 ORTHO05D005703 5.3e-28 128.6 306 37.3
AT4G10970 Arabidopsis thaliana HOM05D005115 ORTHO05D005703 6.9e-28 128.3 220 45.0
CARHR255630 Cardamine hirsuta HOM05D005115 ORTHO05D005703 9.1e-28 127.9 219 43.8
MBI07_g07104_MAGBIO Magnolia biondii HOM05D005115 ORTHO05D005703 9.1e-28 127.9 208 47.1
BcaB01g02726 Brassica carinata HOM05D005115 ORTHO05D005703 7.7e-27 124.8 221 43.9
BcaC01g04648 Brassica carinata HOM05D005115 ORTHO05D005703 1.3e-26 124.0 223 43.9
Sp6g06500 Schrenkiella parvula HOM05D005115 ORTHO05D005703 1.7e-26 123.6 220 45.9
C03p35310 Brassica napus HOM05D005115 ORTHO05D005703 2.9e-26 122.9 184 47.3
unitig_0.g2839 Utricularia gibba HOM05D005115 ORTHO05D005703 6.5e-26 121.7 142 52.1
Sabra03G0101600 Salix brachista HOM05D000906 ORTHO05D000713 8.5e-26 121.3 292 34.9
AL6G45070 Arabidopsis lyrata HOM05D005115 ORTHO05D005703 1.9e-25 120.2 226 45.1
Zm00001eb178470 Zea mays HOM05D005115 ORTHO05D005703 2.1e-24 116.7 190 44.7
Lalb_Chr05g0211561 Lupinus albus HOM05D005115 ORTHO05D005703 7.9e-24 114.8 100 61.0
Aa31LG9G11140 Aethionema arabicum HOM05D005115 ORTHO05D005703 1.0e-23 114.4 262 37.0
FAN04G1053 Fragaria x ananassa HOM05D005115 ORTHO05D005703 4.4e-22 109.0 71 81.7
Zm00001eb042700 Zea mays HOM05D005115 ORTHO05D005703 9.7e-22 107.8 123 54.5
AT4G23910 Arabidopsis thaliana HOM05D005115 ORTHO05D005703 1.1e-20 104.4 207 40.6
BolC3t15841H Brassica oleracea HOM05D005115 ORTHO05D005703 1.4e-20 104.0 120 54.2
Thhalv10026287m.g Eutrema salsugineum HOM05D005115 ORTHO05D005703 1.8e-20 103.6 211 42.2
A03p29200 Brassica napus HOM05D005115 ORTHO05D005703 5.3e-20 102.1 244 39.3
SHI06967 Sapria himalayana HOM05D005115 ORTHO05D005703 5.3e-20 102.1 108 52.8
Sp7g21880 Schrenkiella parvula HOM05D005115 ORTHO05D005703 5.3e-20 102.1 208 39.4
Os08g0374200 Oryza sativa ssp. japonica HOM05D005115 ORTHO05D005703 9.1e-20 101.3 108 53.7
AL7G29420 Arabidopsis lyrata HOM05D005115 ORTHO05D005703 4.5e-19 99.0 209 39.2
BcaNung01098 Brassica carinata HOM05D005115 ORTHO05D005703 5.5e-17 92.0 209 37.3
Carub.0007s1718 Capsella rubella HOM05D005115 ORTHO05D005703 7.2e-17 91.7 201 40.8
A01p15220 Brassica napus HOM05D005115 ORTHO05D005703 1.2e-16 90.9 204 39.2
SEGI_32593 Sequoiadendron giganteum HOM05D005115 ORTHO05D005703 1.2e-16 90.9 180 41.1
arahy.Tifrunner.gnm1.ann1.ULQ1VN Arachis hypogaea HOM05D005115 ORTHO05D005703 4.7e-16 89.0 70 64.3
C01p19150 Brassica napus HOM05D005115 ORTHO05D005703 6.1e-16 88.6 113 46.9
BraA01t01460Z Brassica rapa HOM05D005115 ORTHO05D005703 8.0e-16 88.2 121 45.5
CARHR231320 Cardamine hirsuta HOM05D005115 ORTHO05D005703 1.8e-15 87.0 111 51.4
Gohir.D12G237999 Gossypium hirsutum HOM05D005115 ORTHO05D005703 1.8e-15 87.0 104 50.0
Gohir.D12G238133 Gossypium hirsutum HOM05D005115 ORTHO05D005703 1.8e-15 87.0 104 50.0
Gorai.008G254900 Gossypium raimondii HOM05D005115 ORTHO05D005703 1.8e-15 87.0 104 50.0
BolC1t01841H Brassica oleracea HOM05D005115 ORTHO05D005703 2.3e-15 86.7 113 46.0
MD06G1108300 Malus domestica HOM05D005115 ORTHO05D005703 3.0e-15 86.3 70 71.4
BcaC09g50931 Brassica carinata HOM05D005115 ORTHO05D005703 5.2e-15 85.5 113 46.0
ATR0602G161 Amborella trichopoda HOM05D005115 ORTHO05D005703 3.7e-13 79.3 107 47.7
DCAR_029907 Daucus carota HOM05D005115 ORTHO05D005703 1.6e-11 73.9 72 62.5
Lsat_1_v5_gn_1_118201 Lactuca sativa HOM05D009751 ORTHO05D005703 2.2e-10 70.1 66 54.5
Lj4g0005021 Lotus japonicus HOM05D005115 ORTHO05D005703 1.1e-09 67.8 172 37.2
Lsat_1_v5_gn_8_68541 Lactuca sativa HOM05D005115 ORTHO05D018183 1.9e-09 67.0 62 56.5
CSS0029994 Camellia sinensis var. sinensis HOM05D005115 ORTHO05D005703 6.8e-07 58.5 88 51.1
CSS0045410 Camellia sinensis var. sinensis HOM05D005115 ORTHO05D005703 6.8e-07 58.5 88 51.1
Lsat_1_v5_gn_5_53240 Lactuca sativa HOM05D004014 ORTHO05D018183 7.5e-06 55.1 86 46.5


User provided reference genes

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