Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_5g04660 Fragaria vesca HOM05D000749 ORTHO05D005685 3.7e-140 501.5 249 100.0
FAN18G0718 Fragaria x ananassa HOM05D000749 ORTHO05D005685 3.6e-135 485.0 244 98.8
FAN18G2450 Fragaria x ananassa HOM05D000749 ORTHO05D005685 8.8e-134 480.3 264 92.8
FAN13G3049 Fragaria x ananassa HOM05D000749 ORTHO05D005685 2.0e-133 479.2 244 96.7
RcHm_v2.0_Chr7g0194721 Rosa chinensis HOM05D000749 ORTHO05D005685 4.0e-126 454.9 246 93.5
FAN08G1955 Fragaria x ananassa HOM05D000749 ORTHO05D005685 8.8e-126 453.8 242 94.2
FAN13G2768 Fragaria x ananassa HOM05D000749 ORTHO05D005685 1.6e-122 443.0 263 86.3
Prupe.5G120700 Prunus persica HOM05D000749 ORTHO05D004893 4.0e-102 375.2 251 74.9
Haze_09069 Corylus avellana HOM05D000749 ORTHO05D005685 5.2e-102 374.8 250 75.6
MD06G1107400 Malus domestica HOM05D000749 ORTHO05D005685 1.5e-101 373.2 243 75.7
Gorai.008G254700 Gossypium raimondii HOM05D000749 ORTHO05D005685 8.6e-97 357.5 249 72.3
Gohir.A12G236700 Gossypium hirsutum HOM05D000749 ORTHO05D005685 2.5e-96 355.9 249 72.3
CiPaw.11G120800 Carya illinoinensis HOM05D000749 ORTHO05D005685 5.6e-96 354.8 248 71.8
Thecc.03G298600 Theobroma cacao HOM05D000749 ORTHO05D005685 1.4e-94 350.1 248 71.4
QL02p030312 Quercus lobata HOM05D000749 ORTHO05D005685 3.1e-94 349.0 244 72.1
GSVIVG01019537001 Vitis vinifera HOM05D003962 ORTHO05D005685 2.6e-93 345.9 247 68.8
Duzib084G0187 Durio zibethinus HOM05D000749 ORTHO05D005685 1.3e-92 343.6 250 68.4
COL.COLO4_10708 Corchorus olitorius HOM05D000749 ORTHO05D005685 6.4e-92 341.3 247 68.8
Dinv37528 Davidia involucrata HOM05D000749 ORTHO05D005685 6.4e-92 341.3 251 68.9
Duzib205G1799 Durio zibethinus HOM05D000749 ORTHO05D005685 8.3e-92 340.9 235 72.8
TWI81G0603 Tripterygium wilfordii HOM05D000749 ORTHO05D005685 1.1e-91 340.5 247 67.6
Cfa012001 Carpinus fangiana HOM05D000749 ORTHO05D004893 2.4e-91 339.3 219 76.7
Manes.01G049300 Manihot esculenta HOM05D000749 ORTHO05D005685 7.0e-91 337.8 234 69.2
CiPaw.12G082400 Carya illinoinensis HOM05D000749 ORTHO05D005685 3.5e-90 335.5 243 68.7
Potri.003G140500 Populus trichocarpa HOM05D000749 ORTHO05D005685 3.9e-89 332.0 250 66.8
CSS0014286 Camellia sinensis var. sinensis HOM05D000749 ORTHO05D005685 7.3e-88 327.8 246 67.1
PGR042G1555 Punica granatum HOM05D000749 ORTHO05D005685 1.2e-87 327.0 251 65.3
Atru.chr9.1976 Acer truncatum HOM05D000749 ORTHO05D005685 4.7e-87 325.1 248 67.3
Atru.chr9.1991 Acer truncatum HOM05D000749 ORTHO05D005685 4.7e-87 325.1 248 67.3
Dinv38828 Davidia involucrata HOM05D003962 ORTHO05D004714 4.7e-87 325.1 233 71.7
CANSAT21G1880 Cannabis sativa HOM05D000749 ORTHO05D005685 1.1e-86 323.9 243 69.1
ClCG01G001690 Citrullus lanatus HOM05D000749 ORTHO05D005685 1.4e-86 323.6 243 65.8
CSS0029811 Camellia sinensis var. sinensis HOM05D000749 ORTHO05D005685 1.8e-86 323.2 242 66.5
CSS0022068 Camellia sinensis var. sinensis HOM05D000749 ORTHO05D005685 2.3e-86 322.8 246 66.3
CSS0041880 Camellia sinensis var. sinensis HOM05D000749 ORTHO05D005685 2.3e-86 322.8 242 66.5
TAR629G1059 Trochodendron aralioides HOM05D000749 ORTHO05D005685 2.3e-86 322.8 248 66.9
MD14G1129100 Malus domestica HOM05D000749 ORTHO05D005685 5.2e-86 321.6 182 84.1
VMungo0251G1927 Vigna mungo HOM05D000749 ORTHO05D005685 1.2e-85 320.5 265 61.1
Potri.001G091100 Populus trichocarpa HOM05D000749 ORTHO05D005685 7.5e-85 317.8 244 66.0
Hma1.2p1_0359F.1_g135200 Hydrangea macrophylla HOM05D000749 ORTHO05D005685 9.9e-85 317.4 246 64.6
Sabra01G0067500 Salix brachista HOM05D000749 ORTHO05D005685 2.2e-84 316.2 257 63.0
PSO135G0827 Papaver somniferum HOM05D000749 ORTHO05D005685 3.7e-84 315.5 253 65.2
Glyma.08G022600 Glycine max HOM05D000749 ORTHO05D005685 1.4e-83 313.5 261 61.3
Sabra03G0101500 Salix brachista HOM05D000749 ORTHO05D005685 3.2e-83 312.4 261 61.7
AL7G29440 Arabidopsis lyrata HOM05D000749 ORTHO05D005685 4.1e-83 312.0 249 63.9
Gohir.D12G237900 Gossypium hirsutum HOM05D000749 ORTHO05D005685 5.4e-83 311.6 185 79.5
Sed0020991 Sechium edule HOM05D000749 ORTHO05D005685 5.4e-83 311.6 245 64.1
PSO384G3968 Papaver somniferum HOM05D000749 ORTHO05D005685 7.1e-83 311.2 242 66.5
Carub.0007s1721 Capsella rubella HOM05D000749 ORTHO05D005685 7.8e-82 307.8 249 62.2
Lalb_Chr09g0332451 Lupinus albus HOM05D000749 ORTHO05D005685 7.8e-82 307.8 251 61.8
AT4G23895 Arabidopsis thaliana HOM05D000749 ORTHO05D004893 1.3e-81 307.0 240 64.6
CsaV3_5G001830 Cucumis sativus L. HOM05D000749 ORTHO05D005685 1.3e-81 307.0 202 74.3
Phvul.002G298000 Phaseolus vulgaris HOM05D000749 ORTHO05D005685 1.7e-81 306.6 262 59.2
Medtr8g099455 Medicago truncatula HOM05D000749 ORTHO05D005685 2.3e-81 306.2 254 60.6
CARHR231300 Cardamine hirsuta HOM05D000749 ORTHO05D005685 3.0e-81 305.8 243 62.6
Lj4g0022263 Lotus japonicus HOM05D000749 ORTHO05D005685 3.0e-81 305.8 248 63.3
vmacro11358 Vaccinium macrocarpon HOM05D000749 ORTHO05D005685 3.0e-81 305.8 235 64.3
Aa31LG6G7160 Aethionema arabicum HOM05D000749 ORTHO05D005685 6.6e-81 304.7 245 61.6
Hma1.2p1_0440F.1_g153310 Hydrangea macrophylla HOM05D000749 ORTHO05D005685 8.6e-81 304.3 247 62.8
arahy.Tifrunner.gnm1.ann1.1JV6NN Arachis hypogaea HOM05D000749 ORTHO05D005685 1.1e-80 303.9 244 63.1
Sp7g21860 Schrenkiella parvula HOM05D000749 ORTHO05D005685 1.1e-80 303.9 251 61.4
THA.LOC104806439 Tarenaya hassleriana HOM05D000749 ORTHO05D005685 1.1e-80 303.9 241 66.4
C07p53200 Brassica napus HOM05D000749 ORTHO05D005685 1.5e-80 303.5 256 61.3
BolC7t45815H Brassica oleracea HOM05D000749 ORTHO05D005685 1.5e-80 303.5 256 61.3
Oeu063515.1 Olea europaea HOM05D000749 ORTHO05D005685 1.9e-80 303.1 248 64.1
arahy.Tifrunner.gnm1.ann1.YIX88E Arachis hypogaea HOM05D000749 ORTHO05D005685 3.3e-80 302.4 244 63.1
Ciclev10022306m.g Citrus clementina HOM05D000749 ORTHO05D005685 1.2e-79 300.4 187 75.9
Glyma.05G216800 Glycine max HOM05D000749 ORTHO05D005685 1.2e-79 300.4 261 59.8
BcaNung04243 Brassica carinata HOM05D000749 ORTHO05D005685 2.1e-79 299.7 274 58.8
BcaNung04079 Brassica carinata HOM05D000749 ORTHO05D005685 2.8e-79 299.3 252 61.1
Gorai.004G132800 Gossypium raimondii HOM05D000749 ORTHO05D005685 4.7e-79 298.5 188 73.9
BraA03t14551Z Brassica rapa HOM05D000749 ORTHO05D005685 6.2e-79 298.1 257 60.3
Ca_17505_v3 Cicer arietinum L. HOM05D000749 ORTHO05D005685 1.1e-78 297.4 248 61.3
Gohir.D08G125900 Gossypium hirsutum HOM05D000749 ORTHO05D005685 1.1e-78 297.4 185 74.6
Ca_17481_v3 Cicer arietinum L. HOM05D000749 ORTHO05D004893 8.9e-78 294.3 246 61.4
SGA_v2.0_scaffold305G47984 Striga asiatica HOM05D000749 ORTHO05D005685 1.2e-77 293.9 237 62.9
MBI06_g08470_MAGBIO Magnolia biondii HOM05D000749 ORTHO05D005685 1.5e-77 293.5 233 63.9
A03p54840 Brassica napus HOM05D000749 ORTHO05D005685 2.0e-77 293.1 243 61.7
Rhsim02G0244300 Rhododendron simsii HOM05D000749 ORTHO05D005685 2.6e-77 292.7 239 61.9
Eucgr.E00870 Eucalyptus grandis HOM05D000749 ORTHO05D005685 9.9e-77 290.8 280 55.7
Actinidia22163 Actinidia chinensis HOM05D000749 ORTHO05D005685 2.2e-76 289.7 234 60.7
Migut.A00638 Erythranthe guttata HOM05D000749 ORTHO05D005685 2.2e-76 289.7 230 60.4
MSTRG.25679 Avicennia marina HOM05D000749 ORTHO05D005685 3.8e-76 288.9 228 64.0
LjContig00312_ERROPOS870357g0005368 Lotus japonicus HOM05D000749 ORTHO05D005685 3.8e-76 288.9 192 72.9
Sc07g0010060 Simmondsia chinensis HOM05D000749 ORTHO05D005685 8.4e-76 287.7 283 56.5
DCAR_029896 Daucus carota HOM05D000749 ORTHO05D005685 1.4e-75 287.0 241 61.4
THA.LOC104813042 Tarenaya hassleriana HOM05D000749 ORTHO05D005685 2.4e-75 286.2 243 63.8
Cc08_g16120 Coffea canephora HOM05D000749 ORTHO05D005685 3.2e-75 285.8 181 72.4
Glyma.11G017700 Glycine max HOM05D000749 ORTHO05D005685 3.2e-75 285.8 193 73.1
Aqoxy7G00094 Aquilegia oxysepala HOM05D000749 ORTHO05D005685 9.2e-75 284.3 241 63.9
MELO3C005770.2 Cucumis melo HOM05D000749 ORTHO05D005685 9.2e-75 284.3 184 73.9
Lj2A167G41 Lonicera japonica HOM05D000749 ORTHO05D005685 2.1e-74 283.1 224 64.3
Thhalv10026064m.g Eutrema salsugineum HOM05D000749 ORTHO05D005685 6.0e-74 281.6 186 72.0
SalBow1G4618 Salvia bowleyana HOM05D000749 ORTHO05D005685 7.8e-74 281.2 243 60.1
TPR.G25592 Trifolium pratense HOM05D000749 ORTHO05D005685 3.0e-73 279.3 194 69.1
Medtr5g009310 Medicago truncatula HOM05D000749 ORTHO05D005685 3.9e-73 278.9 188 72.9
Sopen12g024420 Solanum pennellii HOM05D000749 ORTHO05D005685 6.6e-73 278.1 234 59.8
HPP92_008182 Vanilla planifolia HOM05D000749 ORTHO05D005685 1.1e-72 277.3 240 58.8
Nitab4.5_0000726g0060 Nicotiana tabacum HOM05D000749 ORTHO05D005685 1.5e-72 276.9 220 62.7
CDE10G0735 Ceratophyllum demersum HOM05D000749 ORTHO05D005685 1.9e-72 276.6 243 61.3
Lsat_1_v5_gn_6_83941 Lactuca sativa HOM05D000749 ORTHO05D004893 1.9e-72 276.6 243 57.2
Solyc12g055950.2 Solanum lycopersicum HOM05D000749 ORTHO05D005685 1.9e-72 276.6 234 59.4
Sc22g0004990 Simmondsia chinensis HOM05D000749 ORTHO05D005685 2.5e-72 276.2 271 54.6
VMungo1215G3291 Vigna mungo HOM05D000749 ORTHO05D005685 2.5e-72 276.2 231 60.2
Os05g0595500 Oryza sativa ssp. japonica HOM05D000749 ORTHO05D005685 4.3e-72 275.4 234 57.7
ECA246G0427 Erigeron canadensis HOM05D000749 ORTHO05D005685 5.6e-72 275.0 234 57.7
Zm00001eb297840 Zea mays HOM05D000749 ORTHO05D005685 5.6e-72 275.0 233 57.5
BcaB03g12399 Brassica carinata HOM05D000749 ORTHO05D005685 3.6e-71 272.3 242 60.7
Lsat_1_v5_gn_3_10900 Lactuca sativa HOM05D000749 ORTHO05D004893 3.6e-71 272.3 250 56.4
Ah.12g052570 Amaranthus hybridus HOM05D000749 ORTHO05D005685 4.7e-71 271.9 210 66.7
Nn1g00225 Nelumbo nucifera HOM05D000749 ORTHO05D005685 4.7e-71 271.9 162 77.8
arahy.Tifrunner.gnm1.ann1.JB76D2 Arachis hypogaea HOM05D000749 ORTHO05D005685 6.2e-71 271.6 191 69.1
HanXRQChr17g0534821 Helianthus annuus HOM05D000749 ORTHO05D005685 1.1e-70 270.8 235 57.0
AUR62010845 Chenopodium quinoa HOM05D000749 ORTHO05D005685 2.4e-70 269.6 278 55.4
AUR62019844 Chenopodium quinoa HOM05D000749 ORTHO05D005685 2.4e-70 269.6 278 55.4
Hund11388 Selenicereus undatus HOM05D000749 ORTHO05D005685 3.1e-70 269.2 219 63.9
HanXRQChr13g0415321 Helianthus annuus HOM05D000749 ORTHO05D005685 5.2e-70 268.5 183 68.3
CAN.G390.4 Capsicum annuum HOM05D000749 ORTHO05D005685 6.9e-70 268.1 234 58.1
Psat7g025640 Pisum sativum HOM05D000749 ORTHO05D005685 6.9e-70 268.1 222 61.7
Nitab4.5_0006775g0110 Nicotiana tabacum HOM05D000749 ORTHO05D005685 1.3e-68 263.8 184 70.1
Peaxi162Scf00117g01125 Petunia axillaris HOM05D000749 ORTHO05D005685 1.3e-68 263.8 252 55.6
Sed0010333 Sechium edule HOM05D000749 ORTHO05D005685 6.4e-68 261.5 183 70.5
Hund14218 Selenicereus undatus HOM05D000749 ORTHO05D005685 2.4e-67 259.6 176 72.7
Nitab4.5_0004010g0100 Nicotiana tabacum HOM05D000749 ORTHO05D005685 2.7e-66 256.1 221 58.8
Lalb_Chr09g0320651 Lupinus albus HOM05D000749 ORTHO05D005685 6.0e-66 255.0 181 69.1
Peaxi162Scf00074g00738 Petunia axillaris HOM05D000749 ORTHO05D005685 8.7e-65 251.1 188 67.6
EL10Ac5g12920 Beta vulgaris HOM05D000749 ORTHO05D004893 9.6e-64 247.7 191 66.0
CAN.G1804.10 Capsicum annuum HOM05D000749 ORTHO05D005685 9.6e-64 247.7 170 68.2
PGSC0003DMG400012277 Solanum tuberosum HOM05D000749 ORTHO05D005685 2.8e-63 246.1 184 65.2
unitig_88.g27644 Utricularia gibba HOM05D000749 ORTHO05D005685 2.8e-63 246.1 168 66.7
Solyc08g082420.3 Solanum lycopersicum HOM05D000749 ORTHO05D005685 4.8e-63 245.4 184 65.2
Sopen08g030670 Solanum pennellii HOM05D000749 ORTHO05D005685 4.8e-63 245.4 184 65.2
unitig_0.g1147 Utricularia gibba HOM05D000749 ORTHO05D005685 6.2e-63 245.0 228 54.8
Phvul.002G164200 Phaseolus vulgaris HOM05D000749 ORTHO05D005685 1.8e-62 243.4 192 64.6
SalBow1G0265 Salvia bowleyana HOM05D000749 ORTHO05D005685 1.8e-62 243.4 330 44.2
ECA240G0537 Erigeron canadensis HOM05D000749 ORTHO05D005685 2.0e-61 240.0 231 54.5
HanXRQChr03g0083461 Helianthus annuus HOM05D000749 ORTHO05D005685 2.9e-60 236.1 175 66.9
PGSC0003DMG400004994 Solanum tuberosum HOM05D000749 ORTHO05D005685 4.9e-60 235.3 161 67.7
BolC3t20284H Brassica oleracea HOM05D000749 ORTHO05D005685 1.9e-59 233.4 202 61.4
Gohir.A08G112900 Gossypium hirsutum HOM05D000749 ORTHO05D005685 4.2e-59 232.3 141 73.8
ATR0602G082 Amborella trichopoda HOM05D000749 ORTHO05D005685 2.7e-58 229.6 223 55.2
Gohir.D12G237901 Gossypium hirsutum HOM05D000749 ORTHO05D005685 5.1e-57 225.3 126 82.5
BcaC01g00478 Brassica carinata HOM05D000749 ORTHO05D005685 3.7e-55 219.2 228 54.4
C03p80360 Brassica napus HOM05D000749 ORTHO05D005685 3.7e-55 219.2 228 54.4
Nitab4.5_0001210g0100 Nicotiana tabacum HOM05D000749 ORTHO05D005685 5.3e-54 215.3 138 73.9
ECA240G3820 Erigeron canadensis HOM05D000749 ORTHO05D005685 2.6e-53 213.0 196 56.1
TPR.G3419 Trifolium pratense HOM05D000749 ORTHO05D005685 1.4e-51 207.2 170 60.6
MSTRG.13887 Avicennia marina HOM05D000749 ORTHO05D005685 1.8e-49 200.3 120 70.8
CDE10G1055 Ceratophyllum demersum HOM05D000749 ORTHO05D005685 1.7e-44 183.7 125 69.6
Mapoly0105s0026 Marchantia polymorpha HOM05D000749 ORTHO05D005685 3.0e-41 172.9 202 46.0
Pp3c8_7850 Physcomitrium patens HOM05D000749 ORTHO05D005685 2.3e-33 146.7 232 38.8
BcaC09g50933 Brassica carinata HOM05D000749 ORTHO05D005685 4.3e-32 142.5 116 59.5
Cpa.g.sc79.31 Carica papaya HOM05D000749 ORTHO05D005685 4.8e-23 112.5 110 58.2
FAN04G2853 Fragaria x ananassa HOM05D000749 ORTHO05D004893 4.8e-23 112.5 60 90.0
AagrBONN_evm.TU.Sc2ySwM_344.2051 Anthoceros agrestis HOM05D000749 ORTHO05D005685 9.1e-22 108.2 101 52.5
Pp3c24_4620 Physcomitrium patens HOM05D000749 ORTHO05D005685 1.2e-21 107.8 149 43.6
TPR.G18933 Trifolium pratense HOM05D000749 ORTHO05D005685 2.5e-19 100.1 79 62.0
CBR_g4807 Chara braunii HOM05D000749 ORTHO05D005685 1.5e-16 90.9 173 32.9
RcHm_v2.0_Chr1g0343991 Rosa chinensis HOM05D000749 ORTHO05D005685 2.8e-15 86.7 48 75.0


User provided reference genes

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