Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_5g04650 Fragaria vesca HOM05D006578 ORTHO05D008100 5.9e-158 560.8 285 100.0
FAN18G3822 Fragaria x ananassa HOM05D006578 ORTHO05D008100 5.9e-134 481.1 247 98.8
FAN18G0518 Fragaria x ananassa HOM05D006578 ORTHO05D008100 1.7e-133 479.6 247 98.8
FAN13G1942 Fragaria x ananassa HOM05D006578 ORTHO05D008100 3.5e-126 455.3 247 93.9
FAN08G0426 Fragaria x ananassa HOM05D006578 ORTHO05D008100 5.9e-126 454.5 247 93.9
FAN04G1820 Fragaria x ananassa HOM05D006578 ORTHO05D008100 1.7e-125 453.0 246 93.9
Prupe.5G120500 Prunus persica HOM05D006578 ORTHO05D008100 1.1e-95 354.0 253 73.5
FAN13G3291 Fragaria x ananassa HOM05D006578 ORTHO05D008100 1.9e-95 353.2 247 78.1
Cfa012002 Carpinus fangiana HOM05D006578 ORTHO05D008100 3.1e-82 309.3 248 64.9
MELO3C016296.2 Cucumis melo HOM05D006578 ORTHO05D008100 2.4e-79 299.7 249 64.3
Duzib068G0825 Durio zibethinus HOM05D006578 ORTHO05D008100 2.1e-78 296.6 247 62.3
CiPaw.11G120900 Carya illinoinensis HOM05D006578 ORTHO05D008100 6.0e-78 295.0 242 65.3
Ciclev10024562m.g Citrus clementina HOM05D006578 ORTHO05D008100 7.8e-78 294.7 244 62.3
CsaV3_4G006610 Cucumis sativus L. HOM05D006578 ORTHO05D008100 1.3e-77 293.9 250 62.4
ClCG07G011600 Citrullus lanatus HOM05D006578 ORTHO05D008100 6.6e-77 291.6 251 64.1
Thecc.03G298500 Theobroma cacao HOM05D006578 ORTHO05D008100 2.5e-76 289.7 248 62.5
COL.COLO4_10707 Corchorus olitorius HOM05D006578 ORTHO05D008100 7.3e-76 288.1 247 61.5
Cpa.g.sc79.32 Carica papaya HOM05D006578 ORTHO05D008100 4.7e-75 285.4 247 59.5
Atru.chr9.1977 Acer truncatum HOM05D006578 ORTHO05D008100 1.1e-74 284.3 243 60.5
Atru.chr9.1992 Acer truncatum HOM05D006578 ORTHO05D008100 1.1e-74 284.3 243 60.5
Manes.02G009600 Manihot esculenta HOM05D006578 ORTHO05D008100 4.0e-74 282.3 244 63.1
TWI60G1670 Tripterygium wilfordii HOM05D006578 ORTHO05D008100 6.9e-74 281.6 252 57.9
Potri.001G091300 Populus trichocarpa HOM05D006578 ORTHO05D008100 4.4e-73 278.9 247 61.9
Gohir.A05G346600 Gossypium hirsutum HOM05D006578 ORTHO05D008100 2.2e-72 276.6 246 59.3
Sabra01G0067600 Salix brachista HOM05D006578 ORTHO05D008100 1.1e-71 274.2 246 58.9
CARHR231290 Cardamine hirsuta HOM05D006578 ORTHO05D008100 1.9e-71 273.5 241 57.7
Potri.003G140400 Populus trichocarpa HOM05D006578 ORTHO05D008100 5.4e-71 271.9 251 59.0
PGR042G0620 Punica granatum HOM05D006578 ORTHO05D008100 7.1e-71 271.6 245 62.0
Glyma.07G075100 Glycine max HOM05D006578 ORTHO05D008100 9.3e-71 271.2 248 58.5
Aa31LG6G7150 Aethionema arabicum HOM05D006578 ORTHO05D008100 2.7e-70 269.6 248 56.9
AT4G23890 Arabidopsis thaliana HOM05D006578 ORTHO05D008100 6.0e-70 268.5 245 56.3
BcaNung04080 Brassica carinata HOM05D006578 ORTHO05D008100 7.8e-70 268.1 244 56.6
Phvul.010G094000 Phaseolus vulgaris HOM05D006578 ORTHO05D008100 7.8e-70 268.1 248 58.5
Thhalv10027518m.g Eutrema salsugineum HOM05D006578 ORTHO05D008100 1.0e-69 267.7 253 56.5
QL02p030348 Quercus lobata HOM05D006578 ORTHO05D008100 2.3e-69 266.5 188 69.7
AL7G29450 Arabidopsis lyrata HOM05D006578 ORTHO05D008100 3.9e-69 265.8 245 56.7
Haze_09067 Corylus avellana HOM05D006578 ORTHO05D008100 3.9e-69 265.8 192 71.4
Lj3g0025915 Lotus japonicus HOM05D006578 ORTHO05D008100 3.9e-69 265.8 248 59.3
Carub.0007s1722 Capsella rubella HOM05D006578 ORTHO05D008100 6.6e-69 265.0 243 56.0
THA.LOC104815081 Tarenaya hassleriana HOM05D006578 ORTHO05D008100 1.1e-68 264.2 249 55.4
BcaNung01096 Brassica carinata HOM05D006578 ORTHO05D008100 1.6e-67 260.4 244 56.6
Oeu009960.1 Olea europaea HOM05D006578 ORTHO05D008100 2.1e-67 260.0 245 58.4
MSTRG.11922 Avicennia marina HOM05D006578 ORTHO05D008100 2.8e-67 259.6 246 59.3
BraA01t01458Z Brassica rapa HOM05D006578 ORTHO05D008100 2.8e-67 259.6 242 55.0
EL10Ac5g12919 Beta vulgaris HOM05D006578 ORTHO05D008100 8.1e-67 258.1 245 58.0
Sp7g21850 Schrenkiella parvula HOM05D006578 ORTHO05D008100 1.1e-66 257.7 243 55.1
Ah.07g197460 Amaranthus hybridus HOM05D006578 ORTHO05D008100 2.4e-66 256.5 286 52.4
Medtr8g032260 Medicago truncatula HOM05D006578 ORTHO05D008100 4.5e-65 252.3 249 54.6
BraA03t14550Z Brassica rapa HOM05D006578 ORTHO05D008100 5.8e-65 251.9 242 53.7
VMungo0331G0206 Vigna mungo HOM05D005332 ORTHO05D006861 5.8e-65 251.9 253 55.7
Dinv37530 Davidia involucrata HOM05D006578 ORTHO05D008100 7.6e-65 251.5 236 58.1
Ca_18845_v3 Cicer arietinum L. HOM05D006578 ORTHO05D008100 1.7e-64 250.4 247 55.5
Cc08_g16100 Coffea canephora HOM05D006578 ORTHO05D008100 1.7e-64 250.4 241 58.9
Sopen08g030660 Solanum pennellii HOM05D006578 ORTHO05D008100 1.7e-64 250.4 250 57.6
BolC1t01839H Brassica oleracea HOM05D006578 ORTHO05D008100 2.2e-64 250.0 244 54.5
C01p19130 Brassica napus HOM05D006578 ORTHO05D008100 2.9e-64 249.6 244 54.5
Hma1.2p1_0359F.1_g135230 Hydrangea macrophylla HOM05D006578 ORTHO05D008100 2.9e-64 249.6 245 55.9
Nitab4.5_0001210g0110 Nicotiana tabacum HOM05D006578 ORTHO05D008100 2.9e-64 249.6 257 56.0
TAR633G0540 Trochodendron aralioides HOM05D006578 ORTHO05D008100 2.9e-64 249.6 247 56.3
A01p15200 Brassica napus HOM05D006578 ORTHO05D008100 6.4e-64 248.4 239 54.8
Gorai.012G073800 Gossypium raimondii HOM05D006578 ORTHO05D008100 3.2e-63 246.1 246 54.1
Gohir.D04G065600 Gossypium hirsutum HOM05D006578 ORTHO05D008100 4.2e-63 245.7 246 54.1
A03p54830 Brassica napus HOM05D006578 ORTHO05D008100 1.2e-62 244.2 242 52.5
CSS0036002 Camellia sinensis var. sinensis HOM05D006578 ORTHO05D008100 2.1e-62 243.4 256 55.9
PGSC0003DMG400044958 Solanum tuberosum HOM05D006578 ORTHO05D008100 2.7e-62 243.0 250 55.6
BcaC09g50934 Brassica carinata HOM05D006578 ORTHO05D008100 4.6e-62 242.3 196 62.8
Sed0010985 Sechium edule HOM05D006578 ORTHO05D008100 6.0e-62 241.9 246 58.9
Solyc08g082400.1 Solanum lycopersicum HOM05D006578 ORTHO05D008100 6.0e-62 241.9 250 56.0
CAN.G1804.8 Capsicum annuum HOM05D006578 ORTHO05D008100 1.0e-61 241.1 246 56.1
Lalb_Chr04g0256691 Lupinus albus HOM05D006578 ORTHO05D008100 6.7e-61 238.4 244 55.3
unitig_32.g10973 Utricularia gibba HOM05D006578 ORTHO05D008100 2.5e-60 236.5 230 57.0
Nitab4.5_0006775g0020 Nicotiana tabacum HOM05D006578 ORTHO05D008100 3.3e-60 236.1 236 58.1
ATR0796G340 Amborella trichopoda HOM05D006578 ORTHO05D008100 4.3e-60 235.7 242 52.5
AUR62010844 Chenopodium quinoa HOM05D006578 ORTHO05D008100 5.6e-60 235.3 243 54.7
Peaxi162Scf00074g00082 Petunia axillaris HOM05D006578 ORTHO05D008100 7.4e-60 235.0 240 57.1
Lsat_1_v5_gn_3_10861 Lactuca sativa HOM05D006578 ORTHO05D008100 1.6e-59 233.8 249 53.8
HanXRQChr17g0534801 Helianthus annuus HOM05D006578 ORTHO05D008100 9.0e-58 228.0 240 55.4
DCAR_029888 Daucus carota HOM05D006578 ORTHO05D008100 1.2e-57 227.6 217 58.1
ECA246G0449 Erigeron canadensis HOM05D001832 ORTHO05D001861 1.7e-56 223.8 236 56.4
SEGI_13573 Sequoiadendron giganteum HOM05D006578 ORTHO05D008100 3.2e-55 219.5 228 53.1
PSO761G0627 Papaver somniferum HOM05D006578 ORTHO05D008100 5.5e-55 218.8 263 49.0
Actinidia27316 Actinidia chinensis HOM05D006578 ORTHO05D008100 9.3e-55 218.0 186 61.3
SEGI_09764 Sequoiadendron giganteum HOM05D006578 ORTHO05D008100 4.6e-54 215.7 219 53.4
Sabra03G0101400 Salix brachista HOM05D006578 ORTHO05D008100 7.9e-54 214.9 250 50.8
Migut.A00640 Erythranthe guttata HOM05D006578 ORTHO05D008100 1.0e-53 214.5 258 52.3
Lj2P167T19 Lonicera japonica HOM05D006578 ORTHO05D008100 5.1e-53 212.2 192 57.8
PSO210G4984 Papaver somniferum HOM05D006578 ORTHO05D008100 5.1e-53 212.2 265 47.2
Hma1.2p1_0359F.1_g135240 Hydrangea macrophylla HOM05D006578 ORTHO05D008100 1.8e-50 203.8 133 72.2
Aqoxy2G01516 Aquilegia oxysepala HOM05D006578 ORTHO05D008100 3.1e-50 203.0 250 45.6
Zm00001eb224490 Zea mays HOM05D006578 ORTHO05D008100 3.1e-50 203.0 223 52.5
AUR62019843 Chenopodium quinoa HOM05D006578 ORTHO05D008100 1.5e-49 200.7 242 48.3
Os07g0196200 Oryza sativa ssp. japonica HOM05D006578 ORTHO05D008100 5.8e-49 198.7 217 50.7
Psat4g152960 Pisum sativum HOM05D006578 ORTHO05D008100 5.8e-49 198.7 247 48.6
GSVIVG01019536001 Vitis vinifera HOM05D006578 ORTHO05D008100 8.7e-45 184.9 247 45.7
AagrBONN_evm.TU.Sc2ySwM_117.36 Anthoceros agrestis HOM05D006578 ORTHO05D008100 1.7e-40 170.6 190 47.9
Pp3c11_19730 Physcomitrium patens HOM05D006578 ORTHO05D008100 5.0e-40 169.1 196 44.9
Mapoly0067s0043 Marchantia polymorpha HOM05D006578 ORTHO05D008100 2.3e-37 160.2 209 42.1
CBR_g28643 Chara braunii HOM05D006578 ORTHO05D008100 4.3e-36 156.0 194 46.9
SMO146G0113 Selaginella moellendorffii HOM05D006578 ORTHO05D008100 1.2e-33 147.9 192 44.8
CiPaw.12G082500 Carya illinoinensis HOM05D006578 ORTHO05D008100 1.1e-28 131.3 252 39.3
TWI81G0713 Tripterygium wilfordii HOM05D006578 ORTHO05D008100 4.1e-26 122.9 151 49.0
BcaNung04242 Brassica carinata HOM05D006578 ORTHO05D008100 4.5e-25 119.4 171 43.9
BolC7t45814H Brassica oleracea HOM05D006578 ORTHO05D008100 4.5e-25 119.4 171 43.9
C07p53190 Brassica napus HOM05D006578 ORTHO05D008100 1.0e-24 118.2 171 43.3
Medtr7g076620 Medicago truncatula HOM05D006578 ORTHO05D008100 3.3e-20 103.2 163 40.5
Sabra15G0075700 Salix brachista HOM05D000345 ORTHO05D000215 7.4e-20 102.1 106 54.7
VMungo1383G2377 Vigna mungo HOM05D006578 ORTHO05D008100 9.7e-20 101.7 146 46.6
Lj1g0003243 Lotus japonicus HOM05D006578 ORTHO05D008100 1.3e-19 101.3 151 45.0
Ca_07882_v3 Cicer arietinum L. HOM05D006578 ORTHO05D008100 2.2e-19 100.5 151 43.0
SalBow1G4365 Salvia bowleyana HOM05D006578 ORTHO05D008100 2.8e-19 100.1 238 36.6
SalBow1G5827 Salvia bowleyana HOM05D006578 ORTHO05D008100 2.8e-19 100.1 238 36.6
TPR.G17579 Trifolium pratense HOM05D006578 ORTHO05D008100 3.7e-19 99.8 133 43.6
Phvul.008G068900 Phaseolus vulgaris HOM05D006578 ORTHO05D008100 1.8e-18 97.4 150 42.0
arahy.Tifrunner.gnm1.ann1.6WXN94 Arachis hypogaea HOM05D006578 ORTHO05D008100 9.1e-18 95.1 153 43.8
Sc07g0010050 Simmondsia chinensis HOM05D006578 ORTHO05D008100 2.6e-17 93.6 195 37.9
Glyma.09G263100 Glycine max HOM05D006578 ORTHO05D008100 4.5e-17 92.8 148 41.9
HPP92_001215 Vanilla planifolia HOM05D006578 ORTHO05D008100 1.0e-16 91.7 147 46.9
arahy.Tifrunner.gnm1.ann1.UYM9MT Arachis hypogaea HOM05D006578 ORTHO05D008100 1.3e-16 91.3 148 44.6
Psat3g111760 Pisum sativum HOM05D006578 ORTHO05D008100 8.5e-16 88.6 145 42.1
SGA_v2.0_scaffold96G29015 Striga asiatica HOM05D003962 ORTHO05D004714 5.5e-15 85.9 153 41.2
Glyma.18G229100 Glycine max HOM05D006578 ORTHO05D008100 1.4e-13 81.3 157 39.5
Nn4g25270 Nelumbo nucifera HOM05D006578 ORTHO05D008100 1.4e-13 81.3 123 43.9
Glyma.03G015000 Glycine max HOM05D006578 ORTHO05D008100 1.5e-12 77.8 131 39.7
Oeu054024.1 Olea europaea HOM05D006578 ORTHO05D008100 7.0e-10 68.9 65 53.8
Sabra10G0172600 Salix brachista HOM05D006578 ORTHO05D008100 1.6e-06 57.8 63 52.4


User provided reference genes

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