Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_5g04640 Fragaria vesca HOM05D004051 ORTHO05D004480 9.2e-37 156.4 79 100.0
FAN18G0508 Fragaria x ananassa HOM05D004051 ORTHO05D004480 9.2e-37 156.4 79 100.0
FAN08G0063 Fragaria x ananassa HOM05D004051 ORTHO05D004480 3.9e-35 151.0 79 96.2
RcHm_v2.0_Chr7g0194731 Rosa chinensis HOM05D004051 ORTHO05D004480 1.9e-34 148.7 79 94.9
FAN18G2387 Fragaria x ananassa HOM05D004051 ORTHO05D004480 4.7e-33 144.1 73 100.0
FAN13G0943 Fragaria x ananassa HOM05D004051 ORTHO05D004480 5.2e-32 140.6 76 93.4
Prupe.5G120400 Prunus persica HOM05D004051 ORTHO05D004480 5.6e-26 120.6 82 80.5
MD06G1107300 Malus domestica HOM05D004051 ORTHO05D004480 9.6e-26 119.8 79 78.5
FAN13G0743 Fragaria x ananassa HOM05D004051 ORTHO05D004480 6.9e-24 113.6 70 81.4
MD06G1107200 Malus domestica HOM05D004051 ORTHO05D004480 1.3e-22 109.4 74 75.7
Glyma.01G225400 Glycine max HOM05D004051 ORTHO05D004480 1.4e-21 105.9 81 71.6
CiPaw.11G121000 Carya illinoinensis HOM05D004051 ORTHO05D004480 5.4e-21 104.0 80 68.8
HanXRQChr03g0083481 Helianthus annuus HOM05D004051 ORTHO05D004480 1.2e-20 102.8 81 69.1
Lalb_Chr05g0224141 Lupinus albus HOM05D004051 ORTHO05D004480 1.6e-20 102.4 77 71.4
Glyma.11G017600 Glycine max HOM05D004051 ORTHO05D004480 7.8e-20 100.1 77 67.5
Phvul.002G298100 Phaseolus vulgaris HOM05D004051 ORTHO05D004480 7.8e-20 100.1 82 68.3
Thecc.03G298400 Theobroma cacao HOM05D004051 ORTHO05D004480 1.3e-19 99.4 80 67.5
LjContig00312_ERROPOS870357g0027890 Lotus japonicus HOM05D004051 ORTHO05D004480 2.3e-19 98.6 80 66.2
CSS0008906 Camellia sinensis var. sinensis HOM05D004051 ORTHO05D004480 3.0e-19 98.2 81 69.1
Duzib205G1876 Durio zibethinus HOM05D004051 ORTHO05D004480 3.0e-19 98.2 81 67.9
Potri.003G140300 Populus trichocarpa HOM05D004051 ORTHO05D004480 3.0e-19 98.2 81 69.1
TAR629G1304 Trochodendron aralioides HOM05D004051 ORTHO05D004480 3.0e-19 98.2 85 63.5
Gohir.D12G237933 Gossypium hirsutum HOM05D004051 ORTHO05D004480 3.9e-19 97.8 80 67.5
Gorai.008G254600 Gossypium raimondii HOM05D004051 ORTHO05D004480 3.9e-19 97.8 80 67.5
Dinv37531 Davidia involucrata HOM05D004051 ORTHO05D004480 5.1e-19 97.4 81 63.0
Actinidia22162 Actinidia chinensis HOM05D004051 ORTHO05D004480 6.6e-19 97.1 81 66.7
arahy.Tifrunner.gnm1.ann1.T1KBZJ Arachis hypogaea HOM05D004051 ORTHO05D004480 6.6e-19 97.1 79 67.1
Eucgr.E00869 Eucalyptus grandis HOM05D004051 ORTHO05D004480 6.6e-19 97.1 76 64.5
Solyc08g008330.3 Solanum lycopersicum HOM05D004051 ORTHO05D004480 1.1e-18 96.3 83 60.2
Sopen08g004210 Solanum pennellii HOM05D004051 ORTHO05D004480 1.1e-18 96.3 83 60.2
Manes.02G009700 Manihot esculenta HOM05D004051 ORTHO05D004480 1.5e-18 95.9 80 65.0
Psat7g025560 Pisum sativum HOM05D004051 ORTHO05D004480 3.3e-18 94.7 80 63.8
EL10Ac5g12918 Beta vulgaris HOM05D004051 ORTHO05D004480 4.3e-18 94.4 82 61.0
Gohir.A12G236600 Gossypium hirsutum HOM05D004051 ORTHO05D004480 4.3e-18 94.4 80 66.2
Oeu063517.1 Olea europaea HOM05D004051 ORTHO05D004480 4.3e-18 94.4 83 62.7
Phvul.002G164300 Phaseolus vulgaris HOM05D004051 ORTHO05D004480 5.6e-18 94.0 77 66.2
Lj4g0013283 Lotus japonicus HOM05D004051 ORTHO05D004480 9.6e-18 93.2 75 66.7
Nn1g01872 Nelumbo nucifera HOM05D004051 ORTHO05D004480 1.3e-17 92.8 85 60.0
arahy.Tifrunner.gnm1.ann1.E0UY0G Arachis hypogaea HOM05D004051 ORTHO05D004480 1.6e-17 92.4 79 64.6
TWI81G0780 Tripterygium wilfordii HOM05D004051 ORTHO05D004480 2.1e-17 92.0 80 62.5
Dinv38829 Davidia involucrata HOM05D004051 ORTHO05D004480 2.8e-17 91.7 81 64.2
Duzib084G0187 Durio zibethinus HOM05D000749 ORTHO05D005685 2.8e-17 91.7 75 65.3
PGR042G1109 Punica granatum HOM05D004051 ORTHO05D004480 3.6e-17 91.3 77 66.2
QL02p030350 Quercus lobata HOM05D004051 ORTHO05D004480 3.6e-17 91.3 79 64.6
Migut.A00641 Erythranthe guttata HOM05D004051 ORTHO05D004480 4.8e-17 90.9 86 54.7
Nn3g19011 Nelumbo nucifera HOM05D004051 ORTHO05D004480 4.8e-17 90.9 80 65.0
THA.LOC104815090 Tarenaya hassleriana HOM05D004051 ORTHO05D004480 6.2e-17 90.5 85 61.2
Atru.chr9.1978 Acer truncatum HOM05D004051 ORTHO05D004480 1.1e-16 89.7 75 66.7
Atru.chr9.1993 Acer truncatum HOM05D004051 ORTHO05D004480 1.1e-16 89.7 75 66.7
Ciclev10023430m.g Citrus clementina HOM05D004051 ORTHO05D004480 1.1e-16 89.7 79 64.6
PSO063G6907 Papaver somniferum HOM05D004051 ORTHO05D004480 1.1e-16 89.7 77 58.4
Sopen08g030650 Solanum pennellii HOM05D004051 ORTHO05D004480 1.8e-16 89.0 80 60.0
FAN04G1321 Fragaria x ananassa HOM05D004051 ORTHO05D004480 2.4e-16 88.6 49 93.9
DCAR_006488 Daucus carota HOM05D004051 ORTHO05D004480 3.1e-16 88.2 75 62.7
Oeu054023.1 Olea europaea HOM05D004051 ORTHO05D004480 3.1e-16 88.2 75 65.3
CSS0023187 Camellia sinensis var. sinensis HOM05D004051 ORTHO05D004480 4.0e-16 87.8 81 61.7
Sed0004965 Sechium edule HOM05D004051 ORTHO05D004480 4.0e-16 87.8 80 60.0
Gohir.D12G237800 Gossypium hirsutum HOM05D004051 ORTHO05D004480 5.3e-16 87.4 75 65.3
Actinidia04200 Actinidia chinensis HOM05D004051 ORTHO05D004480 6.9e-16 87.0 81 63.0
ECA240G0536 Erigeron canadensis HOM05D004051 ORTHO05D004480 6.9e-16 87.0 83 59.0
COL.COLO4_10706 Corchorus olitorius HOM05D004051 ORTHO05D004480 1.2e-15 86.3 76 63.2
PGSC0003DMG400005791 Solanum tuberosum HOM05D004051 ORTHO05D004480 1.2e-15 86.3 84 54.8
Cc08_g16090 Coffea canephora HOM05D004051 ORTHO05D004480 1.5e-15 85.9 79 60.8
TWI15G0384 Tripterygium wilfordii HOM05D004051 ORTHO05D004480 2.0e-15 85.5 80 60.0
AL7G29460 Arabidopsis lyrata HOM05D004051 ORTHO05D004480 3.4e-15 84.7 73 60.3
arahy.Tifrunner.gnm1.ann1.ZDLG37 Arachis hypogaea HOM05D004051 ORTHO05D004480 3.4e-15 84.7 77 62.3
CARHR231280 Cardamine hirsuta HOM05D004051 ORTHO05D004480 3.4e-15 84.7 73 60.3
TPR.G25572 Trifolium pratense HOM05D004051 ORTHO05D004480 3.4e-15 84.7 78 59.0
VMungo0251G1927 Vigna mungo HOM05D000749 ORTHO05D005685 3.4e-15 84.7 76 65.8
Ah.07g197450 Amaranthus hybridus HOM05D004051 ORTHO05D004480 5.8e-15 84.0 84 58.3
Solyc08g082390.3 Solanum lycopersicum HOM05D004051 ORTHO05D004480 5.8e-15 84.0 80 57.5
Sc01g0010310 Simmondsia chinensis HOM05D004051 ORTHO05D004480 7.6e-15 83.6 82 58.5
unitig_88.g27640 Utricularia gibba HOM05D004051 ORTHO05D004480 9.9e-15 83.2 78 56.4
Peaxi162Scf00102g01842 Petunia axillaris HOM05D004051 ORTHO05D004480 1.3e-14 82.8 79 57.0
CANSAT21G2574 Cannabis sativa HOM05D004051 ORTHO05D004480 1.7e-14 82.4 77 58.4
Manes.06G159300 Manihot esculenta HOM05D004051 ORTHO05D004480 2.2e-14 82.0 81 59.3
Medtr8g099465 Medicago truncatula HOM05D004051 ORTHO05D004480 2.2e-14 82.0 68 64.7
Thhalv10026982m.g Eutrema salsugineum HOM05D004051 ORTHO05D004480 3.8e-14 81.3 73 63.0
Actinidia03163 Actinidia chinensis HOM05D004051 ORTHO05D004480 4.9e-14 80.9 85 57.6
BcaNung04241 Brassica carinata HOM05D004051 ORTHO05D004480 4.9e-14 80.9 75 58.7
Carub.0007s1723 Capsella rubella HOM05D004051 ORTHO05D004480 6.4e-14 80.5 75 57.3
Sabra03G0101300 Salix brachista HOM05D004051 ORTHO05D004480 6.4e-14 80.5 93 54.8
AT4G23885 Arabidopsis thaliana HOM05D004051 ORTHO05D004480 8.4e-14 80.1 74 59.5
Dinv29295 Davidia involucrata HOM05D004051 ORTHO05D004480 8.4e-14 80.1 87 57.5
SGA_v2.0_scaffold96G29014 Striga asiatica HOM05D004051 ORTHO05D004480 8.4e-14 80.1 80 56.2
BcaNung01095 Brassica carinata HOM05D004051 ORTHO05D004480 1.1e-13 79.7 73 58.9
PGSC0003DMG400012279 Solanum tuberosum HOM05D004051 ORTHO05D004480 1.1e-13 79.7 80 56.2
Gorai.004G111400 Gossypium raimondii HOM05D004051 ORTHO05D004480 1.4e-13 79.3 91 51.6
SalBow1G7115 Salvia bowleyana HOM05D004051 ORTHO05D004480 1.4e-13 79.3 78 52.6
Sp7g21840 Schrenkiella parvula HOM05D004051 ORTHO05D004480 1.4e-13 79.3 75 58.7
Hund14219 Selenicereus undatus HOM05D004051 ORTHO05D004480 1.4e-13 79.3 74 58.1
GSVIVG01019535001 Vitis vinifera HOM05D004051 ORTHO05D004480 1.4e-13 79.3 85 56.5
Rhsim09G0205000 Rhododendron simsii HOM05D004051 ORTHO05D004480 1.9e-13 79.0 82 54.9
AUR62010843 Chenopodium quinoa HOM05D004051 ORTHO05D004480 2.4e-13 78.6 69 62.3
Gohir.D08G104000 Gossypium hirsutum HOM05D004051 ORTHO05D004480 2.4e-13 78.6 91 53.8
QL09p009613 Quercus lobata HOM05D004051 ORTHO05D004480 3.2e-13 78.2 78 57.7
SalBow1G2120 Salvia bowleyana HOM05D004051 ORTHO05D004480 3.2e-13 78.2 78 52.6
Thecc.03G195700 Theobroma cacao HOM05D004051 ORTHO05D004480 3.2e-13 78.2 89 52.8
CiPaw.05G252200 Carya illinoinensis HOM05D004051 ORTHO05D004480 4.2e-13 77.8 84 53.6
CDE09G0659 Ceratophyllum demersum HOM05D004051 ORTHO05D004480 4.2e-13 77.8 83 49.4
ClCG01G001670 Citrullus lanatus HOM05D004051 ORTHO05D004480 5.4e-13 77.4 86 54.7
HanXRQChr13g0415281 Helianthus annuus HOM05D004051 ORTHO05D004480 5.4e-13 77.4 78 56.4
Aa31LG6G7140 Aethionema arabicum HOM05D004051 ORTHO05D004480 7.1e-13 77.0 77 58.4
BcaC09g50935 Brassica carinata HOM05D004051 ORTHO05D004480 7.1e-13 77.0 74 58.1
Hma1.2p1_1461F.1_g285050 Hydrangea macrophylla HOM05D004051 ORTHO05D004480 7.1e-13 77.0 77 59.7
Hma1.2p1_2808F.1_g328863 Hydrangea macrophylla HOM05D004051 ORTHO05D004480 7.1e-13 77.0 77 59.7
vmacro11468 Vaccinium macrocarpon HOM05D004051 ORTHO05D004480 1.6e-12 75.9 76 53.9
CiPaw.05G255100 Carya illinoinensis HOM05D004051 ORTHO05D004480 2.1e-12 75.5 84 52.4
Gohir.A08G096024 Gossypium hirsutum HOM05D004051 ORTHO05D004480 3.5e-12 74.7 91 49.5
CDE02G2345 Ceratophyllum demersum HOM05D004051 ORTHO05D004480 4.6e-12 74.3 78 52.6
Hund04853 Selenicereus undatus HOM05D004051 ORTHO05D004480 4.6e-12 74.3 82 53.7
BcaNung04081 Brassica carinata HOM05D004051 ORTHO05D004480 6.0e-12 73.9 73 56.2
MD01G1219400 Malus domestica HOM05D004051 ORTHO05D004480 6.0e-12 73.9 84 53.6
Haze_09066 Corylus avellana HOM05D004051 ORTHO05D004480 7.9e-12 73.6 79 54.4
PGR042G3499 Punica granatum HOM05D004051 ORTHO05D004480 7.9e-12 73.6 84 50.0
AUR62019374 Chenopodium quinoa HOM05D004051 ORTHO05D004480 1.0e-11 73.2 84 54.8
FAN01G1391 Fragaria x ananassa HOM05D004051 ORTHO05D004480 1.0e-11 73.2 80 52.5
CiPaw.05G255500 Carya illinoinensis HOM05D004051 ORTHO05D004480 1.3e-11 72.8 84 51.2
Sc13g0009750 Simmondsia chinensis HOM05D004051 ORTHO05D004480 1.3e-11 72.8 78 53.8
Ca_17505_v3 Cicer arietinum L. HOM05D000749 ORTHO05D005685 1.8e-11 72.4 75 56.0
FvH4_7g31780 Fragaria vesca HOM05D004051 ORTHO05D004480 1.8e-11 72.4 80 52.5
RcHm_v2.0_Chr1g0381011 Rosa chinensis HOM05D004051 ORTHO05D004480 1.8e-11 72.4 79 51.9
GSVIVG01038715001 Vitis vinifera HOM05D004051 ORTHO05D004480 6.7e-11 70.5 74 58.1
C07p53180 Brassica napus HOM05D004051 ORTHO05D004480 8.7e-11 70.1 74 51.4
Ah.12g052570 Amaranthus hybridus HOM05D000749 ORTHO05D005685 1.1e-10 69.7 79 54.4
Hund11389 Selenicereus undatus HOM05D004051 ORTHO05D004480 1.1e-10 69.7 77 53.2
Atru.chr1.148 Acer truncatum HOM05D004051 ORTHO05D004480 1.9e-10 68.9 81 53.1
A01p15190 Brassica napus HOM05D004051 ORTHO05D004480 1.9e-10 68.9 72 56.9
Ciclev10006352m.g Citrus clementina HOM05D004051 ORTHO05D004480 1.9e-10 68.9 74 54.1
Sed0007169 Sechium edule HOM05D004051 ORTHO05D004480 1.9e-10 68.9 85 51.8
AL6G35560 Arabidopsis lyrata HOM05D004051 ORTHO05D004480 3.3e-10 68.2 76 52.6
A02p40750 Brassica napus HOM05D004051 ORTHO05D004480 3.3e-10 68.2 82 51.2
BraA01t01457Z Brassica rapa HOM05D004051 ORTHO05D004480 4.3e-10 67.8 72 55.6
DCAR_010606 Daucus carota HOM05D004051 ORTHO05D004480 4.3e-10 67.8 78 53.8
Sp2g23150 Schrenkiella parvula HOM05D004051 ORTHO05D004480 4.3e-10 67.8 84 53.6
Sed0015186 Sechium edule HOM05D004051 ORTHO05D004480 4.3e-10 67.8 77 58.4
BcaB07g29898 Brassica carinata HOM05D004051 ORTHO05D004480 5.6e-10 67.4 82 51.2
FAN10G0142 Fragaria x ananassa HOM05D004051 ORTHO05D004480 5.6e-10 67.4 82 51.2
Thhalv10005218m.g Eutrema salsugineum HOM05D004051 ORTHO05D004480 7.4e-10 67.0 86 48.8
FAN10G1914 Fragaria x ananassa HOM05D004051 ORTHO05D004480 7.4e-10 67.0 93 46.2
AT5G24165 Arabidopsis thaliana HOM05D004051 ORTHO05D004480 9.6e-10 66.6 79 53.2
Carub.0006s2191 Capsella rubella HOM05D004051 ORTHO05D004480 9.6e-10 66.6 76 51.3
BcaNung01808 Brassica carinata HOM05D004051 ORTHO05D004480 1.3e-09 66.2 82 48.8
A03p54820 Brassica napus HOM05D004051 ORTHO05D004480 1.3e-09 66.2 68 52.9
C01p19120 Brassica napus HOM05D004051 ORTHO05D004480 1.3e-09 66.2 71 53.5
BraA03t14549Z Brassica rapa HOM05D004051 ORTHO05D004480 1.3e-09 66.2 68 52.9
MBI06_g08462_MAGBIO Magnolia biondii HOM05D004051 ORTHO05D004480 1.3e-09 66.2 86 48.8
CsaV3_5G001830 Cucumis sativus L. HOM05D000749 ORTHO05D005685 2.8e-09 65.1 91 48.4
BcaNung01214 Brassica carinata HOM05D004051 ORTHO05D004480 4.8e-09 64.3 78 50.0
CARHR189350 Cardamine hirsuta HOM05D004051 ORTHO05D004480 4.8e-09 64.3 80 51.2
BolC1t01838H Brassica oleracea HOM05D004051 ORTHO05D004480 6.2e-09 63.9 69 52.2
ClCG01G000480 Citrullus lanatus HOM05D004051 ORTHO05D004480 6.2e-09 63.9 80 50.0
HPP92_020160 Vanilla planifolia HOM05D004051 ORTHO05D004480 8.1e-09 63.5 92 44.6
MELO3C005880.2 Cucumis melo HOM05D004051 ORTHO05D004480 1.4e-08 62.8 79 50.6
Potri.012G011600 Populus trichocarpa HOM05D004051 ORTHO05D004480 1.8e-08 62.4 78 50.0
FAN03G1224 Fragaria x ananassa HOM05D004051 ORTHO05D004480 3.1e-08 61.6 75 48.0
AagrBONN_evm.TU.Sc2ySwM_369.239 Anthoceros agrestis HOM05D004051 ORTHO05D004480 5.3e-08 60.8 80 46.2
EL10Ac3g05304 Beta vulgaris HOM05D004051 ORTHO05D004480 1.2e-07 59.7 78 47.4
THA.LOC104821369 Tarenaya hassleriana HOM05D004051 ORTHO05D004480 2.6e-07 58.5 88 44.3
HPP92_020177 Vanilla planifolia HOM05D004051 ORTHO05D004480 9.9e-07 56.6 89 42.7
C07p43550 Brassica napus HOM05D004051 ORTHO05D004480 2.9e-06 55.1 79 44.3
BolC7t44882H Brassica oleracea HOM05D004051 ORTHO05D004480 6.4e-06 53.9 77 44.2
Lj2A167G43 Lonicera japonica HOM05D004051 ORTHO05D004480 6.4e-06 53.9 58 55.2


User provided reference genes

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