Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_5g04510 Fragaria vesca HOM05D006572 ORTHO05D008181 7.6e-296 1020.0 612 100.0
FAN18G3438 Fragaria x ananassa HOM05D006572 ORTHO05D008181 4.9e-287 990.7 613 91.4
FAN18G4203 Fragaria x ananassa HOM05D006572 ORTHO05D008181 1.4e-286 989.2 622 94.1
FAN04G0113 Fragaria x ananassa HOM05D006572 ORTHO05D008181 3.5e-269 931.4 620 81.1
FAN08G2039 Fragaria x ananassa HOM05D006572 ORTHO05D008181 9.3e-262 906.7 618 89.6
RcHm_v2.0_Chr7g0194941 Rosa chinensis HOM05D006572 ORTHO05D008181 3.4e-203 712.2 609 76.0
Prupe.5G118200 Prunus persica HOM05D006572 ORTHO05D008181 6.0e-176 621.7 610 63.8
MD14G1128100 Malus domestica HOM05D006572 ORTHO05D008181 6.5e-154 548.5 602 60.3
Thecc.03G297200 Theobroma cacao HOM05D006572 ORTHO05D008181 1.3e-151 540.8 609 56.7
COL.COLO4_10694 Corchorus olitorius HOM05D006572 ORTHO05D008181 8.2e-149 531.6 624 49.5
VMungo0251G1431 Vigna mungo HOM05D006572 ORTHO05D008181 3.4e-147 526.2 627 52.6
Phvul.002G297700 Phaseolus vulgaris HOM05D006572 ORTHO05D008181 2.3e-143 513.5 610 56.2
Lalb_Chr05g0224161 Lupinus albus HOM05D006572 ORTHO05D008181 3.9e-143 512.7 601 56.6
Ciclev10019283m.g Citrus clementina HOM05D006572 ORTHO05D008181 4.3e-142 509.2 618 54.2
Lj4g0027687 Lotus japonicus HOM05D006572 ORTHO05D008181 4.3e-142 509.2 627 48.8
Glyma.05G216500 Glycine max HOM05D006572 ORTHO05D008181 8.2e-141 505.0 611 54.7
TWI60G0540 Tripterygium wilfordii HOM05D006572 ORTHO05D008181 1.8e-140 503.8 595 55.3
Duzib205G1524 Durio zibethinus HOM05D006572 ORTHO05D008181 9.1e-140 501.5 608 53.1
Medtr8g099415 Medicago truncatula HOM05D006572 ORTHO05D008181 7.7e-139 498.4 606 49.2
Manes.02G010400 Manihot esculenta HOM05D006572 ORTHO05D008181 6.3e-133 478.8 597 54.3
Potri.001G092000 Populus trichocarpa HOM05D006572 ORTHO05D008181 8.2e-133 478.4 600 53.7
Rhsim02G0242800 Rhododendron simsii HOM05D006572 ORTHO05D008181 3.1e-132 476.5 605 52.9
CiPaw.12G083500 Carya illinoinensis HOM05D006572 ORTHO05D008181 2.5e-129 466.8 602 53.7
Nitab4.5_0005537g0050 Nicotiana tabacum HOM05D006572 ORTHO05D008181 1.6e-128 464.2 618 48.2
Gohir.D03G082800 Gossypium hirsutum HOM05D006572 ORTHO05D008181 6.1e-128 462.2 603 48.8
GSVIVG01019526001 Vitis vinifera HOM05D006572 ORTHO05D008181 2.0e-126 457.2 603 51.9
Eucgr.E00859 Eucalyptus grandis HOM05D006572 ORTHO05D008181 4.4e-126 456.1 594 49.3
Psat7g026640 Pisum sativum HOM05D006572 ORTHO05D008181 5.3e-124 449.1 596 52.0
Duzib068G0791 Durio zibethinus HOM05D006572 ORTHO05D008181 3.2e-121 439.9 598 50.7
Gorai.003G080600 Gossypium raimondii HOM05D006572 ORTHO05D008181 1.2e-120 438.0 603 49.6
EL10Ac5g12911 Beta vulgaris HOM05D006572 ORTHO05D008181 1.6e-120 437.6 637 46.3
Migut.A00646 Erythranthe guttata HOM05D006572 ORTHO05D008181 2.7e-120 436.8 600 48.0
Gohir.A02G101400 Gossypium hirsutum HOM05D006572 ORTHO05D008181 1.8e-119 434.1 603 49.1
Lj8C208G13 Lonicera japonica HOM05D006572 ORTHO05D008181 2.3e-119 433.7 592 50.3
Haze_08618 Corylus avellana HOM05D006572 ORTHO05D008181 1.2e-118 431.4 555 53.7
Peaxi162Scf00074g00932 Petunia axillaris HOM05D006572 ORTHO05D008181 7.5e-118 428.7 594 48.8
FAN13G1782 Fragaria x ananassa HOM05D006572 ORTHO05D008181 9.7e-118 428.3 325 78.2
Sabra01G0068400 Salix brachista HOM05D006572 ORTHO05D008181 2.2e-117 427.2 598 50.2
CSS0002826 Camellia sinensis var. sinensis HOM05D006572 ORTHO05D008181 3.7e-117 426.4 607 46.6
MSTRG.25670 Avicennia marina HOM05D006572 ORTHO05D008181 1.4e-116 424.5 593 50.4
Nitab4.5_0001231g0070 Nicotiana tabacum HOM05D006572 ORTHO05D008181 2.0e-115 420.6 643 46.0
Actinidia04204 Actinidia chinensis HOM05D006572 ORTHO05D008181 6.1e-112 409.1 603 47.8
AUR62019834 Chenopodium quinoa HOM05D006572 ORTHO05D008181 5.2e-111 406.0 584 49.3
HanXRQChr02g0047891 Helianthus annuus HOM05D006572 ORTHO05D008181 2.2e-109 400.6 607 47.0
Nn3g19021 Nelumbo nucifera HOM05D006572 ORTHO05D008181 1.7e-106 391.0 605 47.1
PGR042G1206 Punica granatum HOM05D006572 ORTHO05D008181 1.7e-106 391.0 597 46.9
PGSC0003DMG400012287 Solanum tuberosum HOM05D006572 ORTHO05D008181 5.0e-106 389.4 601 46.1
MBI06_g08449_MAGBIO Magnolia biondii HOM05D006572 ORTHO05D008181 1.9e-105 387.5 539 47.3
ECA233G0093 Erigeron canadensis HOM05D006572 ORTHO05D008181 2.5e-105 387.1 604 42.2
SalBow1G0494 Salvia bowleyana HOM05D006572 ORTHO05D008181 7.2e-105 385.6 560 46.2
Oeu031670.2 Olea europaea HOM05D006572 ORTHO05D008181 3.6e-104 383.3 632 44.0
BcaNung04237 Brassica carinata HOM05D006572 ORTHO05D008181 8.0e-104 382.1 602 48.0
C07p53150 Brassica napus HOM05D006572 ORTHO05D008181 8.0e-104 382.1 602 48.0
Dinv38835 Davidia involucrata HOM05D006572 ORTHO05D008181 1.4e-103 381.3 501 54.5
Sopen08g030540 Solanum pennellii HOM05D006572 ORTHO05D008181 2.3e-103 380.6 602 46.0
arahy.Tifrunner.gnm1.ann1.GR96MW Arachis hypogaea HOM05D006572 ORTHO05D008181 5.2e-103 379.4 611 46.8
Dinv37535 Davidia involucrata HOM05D006572 ORTHO05D008181 8.9e-103 378.6 358 64.8
SHI08936 Sapria himalayana HOM05D006572 ORTHO05D008181 5.7e-102 375.9 630 43.5
BolC7t45811H Brassica oleracea HOM05D006572 ORTHO05D008181 9.8e-102 375.2 602 47.7
Cfa021209 Carpinus fangiana HOM05D006572 ORTHO05D008181 2.8e-101 373.6 533 50.5
CANSAT21G1897 Cannabis sativa HOM05D006572 ORTHO05D008181 6.3e-101 372.5 598 45.2
TPR.G3379 Trifolium pratense HOM05D006572 ORTHO05D008181 6.3e-101 372.5 609 50.9
Aqoxy5G04214 Aquilegia oxysepala HOM05D006572 ORTHO05D008181 8.3e-101 372.1 601 44.6
A03p54790 Brassica napus HOM05D006572 ORTHO05D008181 1.4e-100 371.3 608 44.9
BraA03t14546Z Brassica rapa HOM05D006572 ORTHO05D008181 1.4e-100 371.3 608 44.9
Solyc08g082270.3 Solanum lycopersicum HOM05D006572 ORTHO05D008181 3.1e-100 370.2 602 45.2
MELO3C016288.2 Cucumis melo HOM05D006572 ORTHO05D008181 5.4e-100 369.4 608 43.1
arahy.Tifrunner.gnm1.ann1.Z469MH Arachis hypogaea HOM05D006572 ORTHO05D008181 1.2e-99 368.2 611 45.8
DCAR_029886 Daucus carota HOM05D006572 ORTHO05D008181 3.5e-99 366.7 601 43.8
Cc08_g16020 Coffea canephora HOM05D006572 ORTHO05D008181 1.7e-98 364.4 617 44.9
SGA_v2.0_scaffold96G28963 Striga asiatica HOM05D006572 ORTHO05D008181 1.7e-98 364.4 628 41.7
Lsat_1_v5_gn_6_12380 Lactuca sativa HOM05D006572 ORTHO05D008181 7.3e-97 359.0 611 41.6
TAR629G2735 Trochodendron aralioides HOM05D006572 ORTHO05D008181 7.3e-97 359.0 386 58.8
Ca_17483_v3 Cicer arietinum L. HOM05D006572 ORTHO05D008181 2.1e-96 357.5 612 45.4
Ca_17508_v3 Cicer arietinum L. HOM05D006572 ORTHO05D008181 2.1e-96 357.5 612 45.4
ATR0188G004 Amborella trichopoda HOM05D006572 ORTHO05D008181 6.1e-96 355.9 599 43.9
Ah.12g052520 Amaranthus hybridus HOM05D006572 ORTHO05D008181 1.0e-95 355.1 607 43.5
PSO384G1203 Papaver somniferum HOM05D006572 ORTHO05D008181 2.3e-95 354.0 608 44.2
Sed0014568 Sechium edule HOM05D006572 ORTHO05D008181 2.0e-94 350.9 567 43.9
Hund11391 Selenicereus undatus HOM05D006572 ORTHO05D008181 5.8e-94 349.4 608 41.9
CARHR231220 Cardamine hirsuta HOM05D006572 ORTHO05D008181 1.7e-93 347.8 607 45.1
vmacro11428 Vaccinium macrocarpon HOM05D006572 ORTHO05D008181 1.2e-91 341.7 621 42.5
TAR636G1103 Trochodendron aralioides HOM05D006572 ORTHO05D008181 1.6e-91 341.3 534 47.0
CAN.G532.118 Capsicum annuum HOM05D006572 ORTHO05D008181 2.7e-91 340.5 521 47.2
AUR62010836 Chenopodium quinoa HOM05D006572 ORTHO05D008181 1.5e-89 334.7 612 42.5
ClCG07G015010 Citrullus lanatus HOM05D006572 ORTHO05D008181 1.5e-89 334.7 604 41.4
Atru.BG.201.p Acer truncatum HOM05D006572 ORTHO05D008181 1.3e-77 295.0 369 55.3
Pp3c22_12260 Physcomitrium patens HOM05D006572 ORTHO05D008181 3.7e-77 293.5 633 29.5
Carub.0007s1729 Capsella rubella HOM05D006572 ORTHO05D008181 2.3e-74 284.3 603 40.3
Os05g0212200 Oryza sativa ssp. japonica HOM05D006572 ORTHO05D008181 5.1e-74 283.1 597 38.5
THA.LOC104815028 Tarenaya hassleriana HOM05D006572 ORTHO05D008181 3.3e-73 280.4 613 39.2
AL7G29520 Arabidopsis lyrata HOM05D006572 ORTHO05D008181 7.3e-73 279.3 605 40.7
AT4G23840 Arabidopsis thaliana HOM05D006572 ORTHO05D008181 6.2e-72 276.2 610 39.5
SEGI_00989 Sequoiadendron giganteum HOM05D006572 ORTHO05D008181 6.8e-71 272.7 614 37.9
CsaV3_4G006550 Cucumis sativus L. HOM05D006572 ORTHO05D008181 2.0e-70 271.2 519 40.8
Thhalv10024706m.g Eutrema salsugineum HOM05D006572 ORTHO05D008181 3.4e-70 270.4 603 38.8
Sc22g0005020 Simmondsia chinensis HOM05D006572 ORTHO05D008181 1.9e-68 264.6 497 45.5
CDE03G0094 Ceratophyllum demersum HOM05D006572 ORTHO05D008181 5.4e-68 263.1 563 40.5
Sp7g21790 Schrenkiella parvula HOM05D006572 ORTHO05D008181 1.2e-67 261.9 601 38.8
BcaNung04088 Brassica carinata HOM05D006572 ORTHO05D008181 1.9e-65 254.6 548 41.1
HPP92_024023 Vanilla planifolia HOM05D006572 ORTHO05D008181 2.8e-64 250.8 602 37.0
Zm00001eb350650 Zea mays HOM05D006572 ORTHO05D008181 4.9e-61 240.0 609 33.0
SMO232G0056 Selaginella moellendorffii HOM05D006572 ORTHO05D008181 7.1e-60 236.1 385 41.8
Aa31LG6G7050 Aethionema arabicum HOM05D006572 ORTHO05D008181 3.1e-55 220.7 609 37.6
unitig_748.g8130 Utricularia gibba HOM05D006572 ORTHO05D008181 2.2e-29 134.8 278 46.0
TAR376G0673 Trochodendron aralioides HOM05D006572 ORTHO05D008181 2.7e-27 127.9 153 47.7
Dinv37534 Davidia involucrata HOM05D006572 ORTHO05D008181 7.9e-27 126.3 237 41.4
unitig_748.g8129 Utricularia gibba HOM05D006572 ORTHO05D008181 5.3e-23 113.6 157 42.0
Hma1.2p1_0450F.1_g155520 Hydrangea macrophylla HOM05D006572 ORTHO05D008181 5.1e-18 97.1 176 37.5
TAR629G3536 Trochodendron aralioides HOM05D006572 ORTHO05D008181 1.7e-16 92.0 176 43.8
Hma1.2p1_0082F.1_g042550 Hydrangea macrophylla HOM05D006572 ORTHO05D008181 2.4e-15 88.2 71 64.8
Hma1.2p1_1530F.1_g289190 Hydrangea macrophylla HOM05D006572 ORTHO05D008181 2.4e-15 88.2 71 64.8
Medtr0050s0150 Medicago truncatula HOM05D006572 ORTHO05D008181 1.1e-09 69.3 107 43.0
QL12p023582 Quercus lobata HOM05D006572 ORTHO05D008181 1.1e-09 69.3 48 68.8
CBR_g39933 Chara braunii HOM05D006572 ORTHO05D008181 1.5e-09 68.9 435 29.2
QL93p2003_0058 Quercus lobata HOM05D006572 ORTHO05D008181 3.3e-09 67.8 48 66.7
Cpa.g.sc79.39 Carica papaya HOM05D006572 ORTHO05D008181 9.1e-07 59.7 70 48.6


User provided reference genes

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