Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_5g03750 Fragaria vesca HOM05D001461 ORTHO05D005534 7.7e-64 246.9 118 100.0
FAN04G2189 Fragaria x ananassa HOM05D001461 ORTHO05D002801 3.8e-63 244.6 118 99.2
FAN08G0967 Fragaria x ananassa HOM05D001461 ORTHO05D005534 3.8e-63 244.6 118 99.2
FAN13G1856 Fragaria x ananassa HOM05D001461 ORTHO05D005534 4.3e-62 241.1 118 97.5
FAN13G2166 Fragaria x ananassa HOM05D001461 ORTHO05D005534 1.2e-61 239.6 118 97.5
RcHm_v2.0_Chr7g0195901 Rosa chinensis HOM05D001461 ORTHO05D005534 3.6e-61 238.0 118 94.9
Atru.chr9.2071 Acer truncatum HOM05D001461 ORTHO05D005534 4.1e-57 224.6 118 89.8
RcHm_v2.0_Chr6g0304921 Rosa chinensis HOM05D001461 ORTHO05D005534 4.1e-57 224.6 118 89.0
MD15G1108200 Malus domestica HOM05D001461 ORTHO05D005534 1.2e-56 223.0 118 88.1
CiPaw.12G086700 Carya illinoinensis HOM05D001461 ORTHO05D005534 2.7e-56 221.9 118 88.1
Manes.02G014100 Manihot esculenta HOM05D001461 ORTHO05D005534 2.7e-56 221.9 118 88.1
Prupe.1G460500 Prunus persica HOM05D001461 ORTHO05D005534 1.7e-55 219.2 118 86.4
Prupe.5G111900 Prunus persica HOM05D001461 ORTHO05D005534 2.3e-55 218.8 120 88.3
TWI18G0300 Tripterygium wilfordii HOM05D001461 ORTHO05D005534 6.6e-55 217.2 118 85.6
TWI60G0303 Tripterygium wilfordii HOM05D001461 ORTHO05D005534 1.5e-54 216.1 118 84.7
COL.COLO4_21750 Corchorus olitorius HOM05D001461 ORTHO05D005534 3.3e-54 214.9 118 83.9
Potri.003G135100 Populus trichocarpa HOM05D001461 ORTHO05D005534 4.3e-54 214.5 116 88.8
GSVIVG01019462001 Vitis vinifera HOM05D001461 ORTHO05D002801 4.3e-54 214.5 116 87.1
ClCG11G007680 Citrullus lanatus HOM05D001461 ORTHO05D005534 5.6e-54 214.2 119 88.2
CANSAT21G0685 Cannabis sativa HOM05D001461 ORTHO05D005534 7.3e-54 213.8 116 87.9
Lalb_Chr09g0332711 Lupinus albus HOM05D001461 ORTHO05D005534 1.2e-53 213.0 114 87.7
Actinidia10093 Actinidia chinensis HOM05D001461 ORTHO05D005534 1.6e-53 212.6 116 82.8
MELO3C008160.2 Cucumis melo HOM05D001461 ORTHO05D005534 1.6e-53 212.6 119 88.2
CsaV3_2G033880 Cucumis sativus L. HOM05D001461 ORTHO05D005534 1.6e-53 212.6 119 88.2
PGR042G3251 Punica granatum HOM05D001461 ORTHO05D005534 1.6e-53 212.6 116 81.9
Medtr5g009740 Medicago truncatula HOM05D001461 ORTHO05D005534 2.1e-53 212.2 116 86.2
Nn7g37350 Nelumbo nucifera HOM05D001461 ORTHO05D005534 2.8e-53 211.8 115 85.2
Thecc.03G290500 Theobroma cacao HOM05D001461 ORTHO05D005534 2.8e-53 211.8 118 83.9
Hma1.2p1_0384F.1_g140900 Hydrangea macrophylla HOM05D001461 ORTHO05D005534 1.0e-52 209.9 116 85.3
Duzib084G0256 Durio zibethinus HOM05D001461 ORTHO05D005534 1.8e-52 209.1 118 82.2
Dinv32542 Davidia involucrata HOM05D001461 ORTHO05D005534 2.3e-52 208.8 116 83.6
FAN18G4081 Fragaria x ananassa HOM05D001461 ORTHO05D005534 2.3e-52 208.8 115 84.3
arahy.Tifrunner.gnm1.ann1.Z0SXD6 Arachis hypogaea HOM05D001461 ORTHO05D005534 3.1e-52 208.4 116 85.3
MBI07_g06330_MAGBIO Magnolia biondii HOM05D001461 ORTHO05D005534 4.0e-52 208.0 115 85.2
Psat2g033040 Pisum sativum HOM05D001461 ORTHO05D005534 4.0e-52 208.0 114 86.0
Sed0013897 Sechium edule HOM05D001461 ORTHO05D005534 5.2e-52 207.6 119 84.9
Migut.E01260 Erythranthe guttata HOM05D001461 ORTHO05D005534 1.2e-51 206.5 118 81.4
Glyma.01G223800 Glycine max HOM05D001461 ORTHO05D005534 1.2e-51 206.5 116 81.9
Gohir.A12G232000 Gossypium hirsutum HOM05D001461 ORTHO05D005534 1.2e-51 206.5 116 82.8
Gohir.D12G235300 Gossypium hirsutum HOM05D001461 ORTHO05D005534 1.2e-51 206.5 116 82.8
Gorai.008G251500 Gossypium raimondii HOM05D001461 ORTHO05D005534 1.2e-51 206.5 116 82.8
Eucgr.E00823 Eucalyptus grandis HOM05D001461 ORTHO05D005534 1.5e-51 206.1 116 81.0
arahy.Tifrunner.gnm1.ann1.PFJ4ZJ Arachis hypogaea HOM05D001461 ORTHO05D005534 2.6e-51 205.3 116 84.5
CSS0041928 Camellia sinensis var. sinensis HOM05D001461 ORTHO05D005534 2.6e-51 205.3 118 79.7
Hma1.2p1_0397F.1_g143760 Hydrangea macrophylla HOM05D001461 ORTHO05D005534 2.6e-51 205.3 115 83.5
MBI15_g19879_MAGBIO Magnolia biondii HOM05D001461 ORTHO05D005534 2.6e-51 205.3 115 83.5
Nitab4.5_0002026g0080 Nicotiana tabacum HOM05D001461 ORTHO05D005534 2.6e-51 205.3 116 81.9
MSTRG.20880 Avicennia marina HOM05D001461 ORTHO05D005534 3.4e-51 204.9 118 81.4
LjContig00312_ERROPOS870357g0027559 Lotus japonicus HOM05D001461 ORTHO05D005534 4.4e-51 204.5 116 83.6
Solyc11g062280.2 Solanum lycopersicum HOM05D001461 ORTHO05D005534 4.4e-51 204.5 116 82.8
Sopen11g024260 Solanum pennellii HOM05D001461 ORTHO05D005534 4.4e-51 204.5 116 82.8
PGSC0003DMG401032495 Solanum tuberosum HOM05D001461 ORTHO05D005534 4.4e-51 204.5 116 82.8
TPR.G6688 Trifolium pratense HOM05D001461 ORTHO05D005534 4.4e-51 204.5 116 82.8
CARHR046740 Cardamine hirsuta HOM05D001461 ORTHO05D005534 5.8e-51 204.1 117 82.9
Thhalv10023764m.g Eutrema salsugineum HOM05D001461 ORTHO05D005534 5.8e-51 204.1 119 82.4
Sabra03G0097400 Salix brachista HOM05D001461 ORTHO05D005534 5.8e-51 204.1 127 78.7
BcaB07g31442 Brassica carinata HOM05D001461 ORTHO05D005534 9.8e-51 203.4 119 81.5
BcaB07g31521 Brassica carinata HOM05D001461 ORTHO05D005534 9.8e-51 203.4 119 81.5
Thhalv10027655m.g Eutrema salsugineum HOM05D001461 ORTHO05D002801 9.8e-51 203.4 117 82.1
Glyma.11G019700 Glycine max HOM05D001461 ORTHO05D005534 1.3e-50 203.0 117 82.1
Lsat_1_v5_gn_7_2481 Lactuca sativa HOM05D001461 ORTHO05D005534 1.3e-50 203.0 115 80.0
Carub.0002s0062 Capsella rubella HOM05D001461 ORTHO05D005534 1.7e-50 202.6 119 81.5
A09p14930 Brassica napus HOM05D001461 ORTHO05D005534 2.2e-50 202.2 119 80.7
BraA09t37138Z Brassica rapa HOM05D001461 ORTHO05D005534 2.2e-50 202.2 119 80.7
HanXRQChr04g0120651 Helianthus annuus HOM05D001461 ORTHO05D005534 2.2e-50 202.2 116 79.3
LjContig00001g0001336 Lotus japonicus HOM05D001461 ORTHO05D005534 2.2e-50 202.2 118 82.2
LjContig00001g0023327 Lotus japonicus HOM05D001461 ORTHO05D005534 2.2e-50 202.2 118 82.2
Peaxi162Scf00029g02519 Petunia axillaris HOM05D001461 ORTHO05D005534 2.2e-50 202.2 116 80.2
BcaC04g22537 Brassica carinata HOM05D001461 ORTHO05D005534 2.9e-50 201.8 119 80.7
A09p14170 Brassica napus HOM05D001461 ORTHO05D005534 2.9e-50 201.8 119 80.7
C09p18050 Brassica napus HOM05D001461 ORTHO05D005534 2.9e-50 201.8 119 80.7
BolC9t54702H Brassica oleracea HOM05D001461 ORTHO05D005534 2.9e-50 201.8 119 80.7
BraA09t37065Z Brassica rapa HOM05D001461 ORTHO05D005534 2.9e-50 201.8 119 80.7
VMungo1215G2099 Vigna mungo HOM05D001461 ORTHO05D005534 2.9e-50 201.8 117 82.9
PGSC0003DMG400007048 Solanum tuberosum HOM05D001461 ORTHO05D005534 3.7e-50 201.4 116 80.2
Migut.B01819 Erythranthe guttata HOM05D001461 ORTHO05D005534 4.9e-50 201.1 118 78.8
SGA_v2.0_scaffold4G02266 Striga asiatica HOM05D001461 ORTHO05D005534 4.9e-50 201.1 118 80.5
Thecc.02G012600 Theobroma cacao HOM05D001461 ORTHO05D005534 4.9e-50 201.1 114 81.6
Aa31LG2G1220 Aethionema arabicum HOM05D001461 ORTHO05D002801 6.4e-50 200.7 119 79.8
Phvul.002G161800 Phaseolus vulgaris HOM05D001461 ORTHO05D005534 6.4e-50 200.7 117 82.9
C09p17080 Brassica napus HOM05D001461 ORTHO05D005534 8.3e-50 200.3 119 79.8
BolC9t54606H Brassica oleracea HOM05D001461 ORTHO05D005534 8.3e-50 200.3 119 79.8
SGA_v2.0_scaffold95G28797 Striga asiatica HOM05D001461 ORTHO05D005534 8.3e-50 200.3 118 79.7
AT1G64185 Arabidopsis thaliana HOM05D001461 ORTHO05D005534 1.1e-49 199.9 119 79.8
CARHR212880 Cardamine hirsuta HOM05D001461 ORTHO05D005534 1.1e-49 199.9 116 81.0
CAN.G375.83 Capsicum annuum HOM05D001461 ORTHO05D005534 1.4e-49 199.5 116 80.2
AT5G41650 Arabidopsis thaliana HOM05D001461 ORTHO05D005534 1.9e-49 199.1 118 79.7
ECA236G4284 Erigeron canadensis HOM05D001461 ORTHO05D005534 3.2e-49 198.4 116 80.2
DCAR_025235 Daucus carota HOM05D001461 ORTHO05D005534 1.2e-48 196.4 116 76.7
Aqoxy6G01758 Aquilegia oxysepala HOM05D001461 ORTHO05D005534 1.6e-48 196.1 114 79.8
unitig_62.g23802 Utricularia gibba HOM05D001461 ORTHO05D005534 1.6e-48 196.1 130 73.1
AL2G10830 Arabidopsis lyrata HOM05D001461 ORTHO05D005534 2.0e-48 195.7 119 78.2
Aqoxy6G01756 Aquilegia oxysepala HOM05D001461 ORTHO05D005534 4.6e-48 194.5 114 79.8
SalBow3G1410 Salvia bowleyana HOM05D001461 ORTHO05D005534 1.3e-47 193.0 119 79.0
PSO384G4702 Papaver somniferum HOM05D001461 ORTHO05D005534 2.3e-47 192.2 121 75.2
Cc03_g08310 Coffea canephora HOM05D001461 ORTHO05D005534 3.9e-47 191.4 118 79.7
Zm00001eb376190 Zea mays HOM05D001461 ORTHO05D005534 3.9e-47 191.4 119 75.6
Zm00001eb376220 Zea mays HOM05D001461 ORTHO05D005534 3.9e-47 191.4 119 75.6
Zm00001eb376310 Zea mays HOM05D001461 ORTHO05D005534 3.9e-47 191.4 119 75.6
Zm00001eb376910 Zea mays HOM05D001461 ORTHO05D005534 3.9e-47 191.4 119 75.6
Zm00001eb376940 Zea mays HOM05D001461 ORTHO05D005534 3.9e-47 191.4 119 75.6
ECA233G4373 Erigeron canadensis HOM05D001461 ORTHO05D005534 6.6e-47 190.7 117 76.9
Sed0026937 Sechium edule HOM05D001461 ORTHO05D005534 1.1e-46 189.9 119 79.0
Zm00001eb376350 Zea mays HOM05D001461 ORTHO05D005534 1.1e-46 189.9 119 74.8
ATR0580G205 Amborella trichopoda HOM05D001461 ORTHO05D005534 1.5e-46 189.5 114 78.1
Zm00001eb376260 Zea mays HOM05D001461 ORTHO05D005534 1.9e-46 189.1 119 74.8
EL10Ac1g00327 Beta vulgaris HOM05D001461 ORTHO05D005534 3.3e-46 188.3 118 72.0
SEGI_29517 Sequoiadendron giganteum HOM05D001461 ORTHO05D005534 2.1e-45 185.7 116 73.3
Os06g0158700 Oryza sativa ssp. japonica HOM05D001461 ORTHO05D005534 4.7e-45 184.5 118 72.0
Carub.0007s3383 Capsella rubella HOM05D001461 ORTHO05D005534 6.2e-45 184.1 118 75.4
AUR62004435 Chenopodium quinoa HOM05D001461 ORTHO05D005534 6.2e-45 184.1 118 69.5
AUR62023513 Chenopodium quinoa HOM05D001461 ORTHO05D005534 6.2e-45 184.1 118 69.5
BcaC04g22646 Brassica carinata HOM05D001461 ORTHO05D005534 1.8e-44 182.6 135 68.9
Sc01g0003060 Simmondsia chinensis HOM05D001461 ORTHO05D005534 1.8e-44 182.6 116 75.0
Rhsim07G0008500 Rhododendron simsii HOM05D001461 ORTHO05D005534 6.8e-44 180.6 166 57.8
FvH4_5g27350 Fragaria vesca HOM05D001461 ORTHO05D005534 2.0e-43 179.1 97 86.6
Lj4g0014781 Lotus japonicus HOM05D001461 ORTHO05D005534 2.6e-43 178.7 116 75.9
Sc01g0010020 Simmondsia chinensis HOM05D001461 ORTHO05D005534 2.6e-43 178.7 119 70.6
Lsat_1_v5_gn_5_108040 Lactuca sativa HOM05D001461 ORTHO05D005534 3.4e-43 178.3 114 74.6
FAN28G0268 Fragaria x ananassa HOM05D001461 ORTHO05D005534 4.4e-43 177.9 103 80.6
CSS0015159 Camellia sinensis var. sinensis HOM05D001461 ORTHO05D005534 6.4e-42 174.1 100 81.0
CSS0025412 Camellia sinensis var. sinensis HOM05D001461 ORTHO05D005534 6.4e-42 174.1 100 81.0
Nitab4.5_0000492g0140 Nicotiana tabacum HOM05D001461 ORTHO05D005534 7.1e-41 170.6 98 82.7
Lj4g0009029 Lotus japonicus HOM05D001461 ORTHO05D005534 6.0e-40 167.5 118 72.0
TPR.G32972 Trifolium pratense HOM05D001461 ORTHO05D005534 3.9e-39 164.9 96 80.2
Glyma.15G246700 Glycine max HOM05D001461 ORTHO05D005534 1.5e-38 162.9 101 76.2
Migut.E01261 Erythranthe guttata HOM05D001461 ORTHO05D005534 1.2e-37 159.8 99 77.8
Nitab4.5_0004629g0090 Nicotiana tabacum HOM05D001461 ORTHO05D005534 1.6e-37 159.5 120 67.5
AagrBONN_evm.TU.Sc2ySwM_344.4522 Anthoceros agrestis HOM05D001461 ORTHO05D005534 1.4e-36 156.4 112 62.5
Ah.07g196880 Amaranthus hybridus HOM05D001461 ORTHO05D005534 3.1e-36 155.2 101 72.3
HPP92_002836 Vanilla planifolia HOM05D001461 ORTHO05D005534 6.8e-36 154.1 100 70.0
MD08G1128900 Malus domestica HOM05D001461 ORTHO05D005534 2.9e-34 148.7 97 74.2
SMO364G0470 Selaginella moellendorffii HOM05D001461 ORTHO05D005534 2.9e-34 148.7 113 59.3
Pp3c1_2350 Physcomitrium patens HOM05D001461 ORTHO05D005534 4.9e-34 147.9 110 58.2
Hund27230 Selenicereus undatus HOM05D001461 ORTHO05D005534 1.6e-32 142.9 100 68.0
Mapoly0143s0026 Marchantia polymorpha HOM05D001461 ORTHO05D005534 9.6e-30 133.7 115 53.9
Zm00001eb376320 Zea mays HOM05D001461 ORTHO05D005534 4.9e-26 121.3 118 52.5
Oeu054373.3 Olea europaea HOM05D000540 ORTHO05D000681 7.1e-25 117.5 64 84.4
FAN13G0962 Fragaria x ananassa HOM05D001461 ORTHO05D005534 7.8e-24 114.0 64 79.7
MD08G1130100 Malus domestica HOM05D001461 ORTHO05D005534 1.0e-23 113.6 160 43.8
Ciclev10022889m.g Citrus clementina HOM05D001461 ORTHO05D005534 1.3e-23 113.2 64 82.8
vmacro13208 Vaccinium macrocarpon HOM05D001461 ORTHO05D005534 3.0e-23 112.1 63 81.0
arahy.Tifrunner.gnm1.ann1.F4HMTZ Arachis hypogaea HOM05D001461 ORTHO05D005534 3.9e-23 111.7 60 88.3
Lj9C594G4 Lonicera japonica HOM05D001461 ORTHO05D005534 8.7e-23 110.5 80 65.0
QL02p032078 Quercus lobata HOM05D001461 ORTHO05D005534 1.9e-22 109.4 54 94.4
arahy.Tifrunner.gnm1.ann1.NAT0LD Arachis hypogaea HOM05D001461 ORTHO05D005534 4.3e-22 108.2 64 82.8
Cfa012281 Carpinus fangiana HOM05D001461 ORTHO05D005534 4.3e-22 108.2 53 94.3
RcHm_v2.0_Chr5g0061641 Rosa chinensis HOM05D001461 ORTHO05D005534 1.3e-21 106.7 60 81.7
Glyma.05G213500 Glycine max HOM05D001461 ORTHO05D005534 1.6e-21 106.3 68 76.5
Glyma.06G264500 Glycine max HOM05D001461 ORTHO05D005534 1.4e-20 103.2 61 77.0
Zm00001eb376250 Zea mays HOM05D001461 ORTHO05D005534 1.4e-20 103.2 71 71.8
MD14G1117200 Malus domestica HOM05D001461 ORTHO05D005534 3.1e-20 102.1 53 86.8
Oeu063667.1 Olea europaea HOM05D001461 ORTHO05D005534 4.0e-20 101.7 70 70.0
arahy.Tifrunner.gnm1.ann1.2LVS12 Arachis hypogaea HOM05D001461 ORTHO05D005534 1.5e-19 99.8 53 84.9
Actinidia28489 Actinidia chinensis HOM05D001461 ORTHO05D005534 3.8e-18 95.1 51 82.4
MCO07G452 Micromonas commoda HOM05D001461 ORTHO05D005534 2.1e-16 89.4 130 38.5
PRCOL_00003773 Prasinoderma coloniale HOM05D001461 ORTHO05D005534 1.3e-15 86.7 137 35.8
Glyma.08G020100 Glycine max HOM05D001461 ORTHO05D005534 6.9e-12 74.3 52 73.1
Solyc07g061860.3 Solanum lycopersicum HOM05D001461 ORTHO05D051078 1.3e-10 70.1 72 50.0
MD08G1129600 Malus domestica HOM05D001461 ORTHO05D005534 1.1e-09 67.0 98 43.9
Sopen07g030150 Solanum pennellii HOM05D018748 ORTHO05D009630 1.8e-07 59.7 35 80.0
Atru.chr9.2072 Acer truncatum HOM05D001461 ORTHO05D005534 5.1e-07 58.2 116 34.5


User provided reference genes

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