Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_5g03680 Fragaria vesca HOM05D005505 ORTHO05D006974 9.7e-297 1022.7 510 100.0
FAN18G0472 Fragaria x ananassa HOM05D005505 ORTHO05D006974 1.2e-289 999.2 510 97.6
FAN13G1424 Fragaria x ananassa HOM05D005505 ORTHO05D006974 1.4e-287 992.3 510 97.1
FAN13G2718 Fragaria x ananassa HOM05D005505 ORTHO05D006974 1.0e-285 986.1 518 95.8
RcHm_v2.0_Chr7g0196051 Rosa chinensis HOM05D005505 ORTHO05D006974 1.1e-279 966.1 510 94.1
FAN08G1440 Fragaria x ananassa HOM05D005505 ORTHO05D006974 1.3e-277 959.1 512 94.3
FAN04G0744 Fragaria x ananassa HOM05D005505 ORTHO05D006974 3.9e-269 931.0 510 92.2
FAN04G1715 Fragaria x ananassa HOM05D005505 ORTHO05D006974 3.9e-269 931.0 510 92.2
Prupe.5G110900 Prunus persica HOM05D005505 ORTHO05D006974 4.3e-252 874.4 512 85.7
MD06G1096300 Malus domestica HOM05D005505 ORTHO05D006974 1.7e-245 852.4 511 84.1
QL09p050425 Quercus lobata HOM05D005505 ORTHO05D006974 7.4e-220 767.3 508 75.2
Ciclev10004754m.g Citrus clementina HOM05D005505 ORTHO05D006974 2.6e-217 758.8 509 74.9
CANSAT21G2364 Cannabis sativa HOM05D005505 ORTHO05D006974 1.2e-214 750.0 513 73.7
Atru.chr4.1761 Acer truncatum HOM05D005505 ORTHO05D006974 6.7e-213 744.2 509 71.9
CiPaw.02G067600 Carya illinoinensis HOM05D005505 ORTHO05D006974 1.5e-212 743.0 515 72.6
vmacro00503 Vaccinium macrocarpon HOM05D005505 ORTHO05D006974 5.7e-212 741.1 513 72.1
TWI53G0062 Tripterygium wilfordii HOM05D005505 ORTHO05D006974 7.4e-212 740.7 510 73.3
Potri.001G051200 Populus trichocarpa HOM05D005505 ORTHO05D006974 1.6e-211 739.6 514 73.9
Actinidia35954 Actinidia chinensis HOM05D005505 ORTHO05D006974 1.1e-210 736.9 514 72.4
MELO3C016329.2 Cucumis melo HOM05D005505 ORTHO05D006974 1.1e-210 736.9 514 73.3
Manes.03G149700 Manihot esculenta HOM05D005505 ORTHO05D006974 4.1e-210 734.9 514 71.6
CsaV3_4G006210 Cucumis sativus L. HOM05D005505 ORTHO05D006974 6.9e-210 734.2 515 72.8
Sed0009691 Sechium edule HOM05D005505 ORTHO05D006974 9.0e-210 733.8 513 73.5
Thecc.04G209900 Theobroma cacao HOM05D005505 ORTHO05D006974 1.2e-209 733.4 512 72.3
arahy.Tifrunner.gnm1.ann1.H9DAM7 Arachis hypogaea HOM05D005505 ORTHO05D006974 1.9e-207 726.1 511 70.8
arahy.Tifrunner.gnm1.ann1.ZRDJ5X Arachis hypogaea HOM05D005505 ORTHO05D006974 2.5e-207 725.7 511 70.6
COL.COLO4_20306 Corchorus olitorius HOM05D005505 ORTHO05D006974 1.2e-206 723.4 512 71.3
arahy.Tifrunner.gnm1.ann1.QX4MR3 Arachis hypogaea HOM05D005505 ORTHO05D006974 2.7e-206 722.2 511 70.1
ClCG07G007730 Citrullus lanatus HOM05D005505 ORTHO05D006974 7.9e-206 720.7 538 69.5
DCAR_030788 Daucus carota HOM05D005505 ORTHO05D006974 3.0e-205 718.8 512 68.6
TAR636G3130 Trochodendron aralioides HOM05D005505 ORTHO05D006974 1.5e-204 716.5 510 71.4
Lalb_Chr19g0126031 Lupinus albus HOM05D005505 ORTHO05D006974 1.9e-204 716.1 509 70.1
Eucgr.H00086 Eucalyptus grandis HOM05D005505 ORTHO05D006974 5.7e-204 714.5 510 70.2
Lalb_Chr03g0041191 Lupinus albus HOM05D005505 ORTHO05D006974 1.8e-202 709.5 509 69.5
Glyma.08G345200 Glycine max HOM05D005505 ORTHO05D006974 4.1e-202 708.4 510 69.6
Medtr2g060550 Medicago truncatula HOM05D005505 ORTHO05D006974 9.1e-202 707.2 510 69.0
Phvul.008G135500 Phaseolus vulgaris HOM05D005505 ORTHO05D006974 9.1e-202 707.2 510 69.6
PGR142G3770 Punica granatum HOM05D005505 ORTHO05D006974 3.4e-201 705.3 511 68.5
Ca_07402_v3 Cicer arietinum L. HOM05D005505 ORTHO05D006974 5.9e-201 704.5 510 68.2
TPR.G26848 Trifolium pratense HOM05D005505 ORTHO05D006974 7.7e-201 704.1 507 68.8
Lj1g0020537 Lotus japonicus HOM05D005505 ORTHO05D006974 3.8e-200 701.8 504 68.7
Sabra01G0035800 Salix brachista HOM05D005505 ORTHO05D006974 1.1e-199 700.3 594 62.3
Lj5g0018216 Lotus japonicus HOM05D005505 ORTHO05D006974 4.2e-199 698.4 510 68.4
Rhsim09G0051500 Rhododendron simsii HOM05D005505 ORTHO05D006974 5.5e-199 698.0 574 64.1
SalBow2G0189 Salvia bowleyana HOM05D005505 ORTHO05D006974 9.4e-199 697.2 504 68.7
Duzib212G0911 Durio zibethinus HOM05D005505 ORTHO05D006974 2.3e-197 692.6 512 69.5
MD14G1116500 Malus domestica HOM05D005505 ORTHO05D006974 5.1e-197 691.4 435 78.9
Gohir.A09G202800 Gossypium hirsutum HOM05D005505 ORTHO05D006974 1.5e-196 689.9 512 68.4
MBI10_g16825_MAGBIO Magnolia biondii HOM05D005505 ORTHO05D006974 3.3e-196 688.7 524 67.0
Psat7g176120 Pisum sativum HOM05D005505 ORTHO05D006974 3.3e-196 688.7 503 67.6
Cc03_g07370 Coffea canephora HOM05D005505 ORTHO05D006974 5.7e-196 688.0 510 68.2
Gorai.006G220300 Gossypium raimondii HOM05D005505 ORTHO05D006974 5.7e-196 688.0 511 67.9
Psat3g151840 Pisum sativum HOM05D005505 ORTHO05D006974 1.3e-195 686.8 506 67.0
Gohir.D09G196900 Gossypium hirsutum HOM05D005505 ORTHO05D006974 4.8e-195 684.9 512 67.4
MSTRG.9830 Avicennia marina HOM05D005505 ORTHO05D006974 6.3e-195 684.5 511 68.5
Nn8g40056 Nelumbo nucifera HOM05D005505 ORTHO05D006974 9.1e-194 680.6 505 67.1
HanXRQChr10g0278391 Helianthus annuus HOM05D005505 ORTHO05D006974 8.5e-192 674.1 510 65.9
THA.LOC104821613 Tarenaya hassleriana HOM05D005505 ORTHO05D006974 6.1e-190 667.9 467 70.4
SGA_v2.0_scaffold380G50374 Striga asiatica HOM05D005505 ORTHO05D006974 7.9e-190 667.5 510 66.7
Carub.0003s2430 Capsella rubella HOM05D005505 ORTHO05D006974 3.0e-189 665.6 512 65.4
ECA233G0503 Erigeron canadensis HOM05D005505 ORTHO05D006974 8.8e-189 664.1 511 64.4
AT3G24200 Arabidopsis thaliana HOM05D005505 ORTHO05D006974 1.7e-187 659.8 512 66.0
CARHR099990 Cardamine hirsuta HOM05D005505 ORTHO05D006974 1.1e-186 657.1 467 69.8
Nitab4.5_0000306g0020 Nicotiana tabacum HOM05D005505 ORTHO05D006974 1.4e-186 656.8 519 64.5
Sopen09g034490 Solanum pennellii HOM05D005505 ORTHO05D006974 1.4e-186 656.8 517 64.8
SGA_v2.0_scaffold57G20149 Striga asiatica HOM05D005505 ORTHO05D006974 1.8e-186 656.4 504 66.1
BraA07t28623Z Brassica rapa HOM05D005505 ORTHO05D006974 4.1e-186 655.2 513 65.5
Migut.G00632 Erythranthe guttata HOM05D005505 ORTHO05D006974 7.0e-186 654.4 512 66.2
BcaC06g35602 Brassica carinata HOM05D005505 ORTHO05D006974 9.1e-186 654.1 513 65.3
A07p08370 Brassica napus HOM05D005505 ORTHO05D006974 1.2e-185 653.7 513 65.5
CAN.G500.70 Capsicum annuum HOM05D005505 ORTHO05D006974 2.0e-185 652.9 455 71.6
Solyc09g091570.2 Solanum lycopersicum HOM05D005505 ORTHO05D006974 2.0e-185 652.9 455 71.0
Aa31LG8G10580 Aethionema arabicum HOM05D005505 ORTHO05D006974 2.6e-185 652.5 512 64.3
C07p13070 Brassica napus HOM05D005505 ORTHO05D006974 4.5e-185 651.7 492 66.9
Lj3A577G5 Lonicera japonica HOM05D005505 ORTHO05D006974 4.5e-185 651.7 547 62.0
C09p75660 Brassica napus HOM05D005505 ORTHO05D006974 7.7e-185 651.0 488 67.4
BolC7t41801H Brassica oleracea HOM05D005505 ORTHO05D006974 1.0e-184 650.6 492 66.9
GSVIVG01012536001 Vitis vinifera HOM05D005505 ORTHO05D006974 2.9e-184 649.0 486 70.0
Thhalv10002522m.g Eutrema salsugineum HOM05D005505 ORTHO05D006974 1.1e-183 647.1 457 70.0
BcaB06g26566 Brassica carinata HOM05D005505 ORTHO05D006974 1.5e-183 646.7 482 68.0
Medtr7g051960 Medicago truncatula HOM05D005505 ORTHO05D006974 7.2e-183 644.4 432 72.2
Aqoxy2G03778 Aquilegia oxysepala HOM05D005505 ORTHO05D006974 3.6e-182 642.1 511 64.2
Duzib151G0717 Durio zibethinus HOM05D005505 ORTHO05D006974 4.7e-182 641.7 510 64.5
Lj3C565G3 Lonicera japonica HOM05D005505 ORTHO05D006974 4.7e-182 641.7 439 72.9
Nitab4.5_0004881g0030 Nicotiana tabacum HOM05D005505 ORTHO05D006974 1.0e-181 640.6 512 63.7
Lsat_1_v5_gn_2_43080 Lactuca sativa HOM05D005505 ORTHO05D006974 2.3e-181 639.4 498 64.1
Cpa.g.sc59.105 Carica papaya HOM05D005505 ORTHO05D006974 4.0e-181 638.6 555 60.9
AUR62025680 Chenopodium quinoa HOM05D005505 ORTHO05D006974 5.2e-181 638.3 495 65.7
Sc24g0002560 Simmondsia chinensis HOM05D005505 ORTHO05D006974 8.8e-181 637.5 478 65.9
PSO017G4123 Papaver somniferum HOM05D005505 ORTHO05D006974 2.0e-180 636.3 507 63.9
PSO063G3796 Papaver somniferum HOM05D005505 ORTHO05D006974 2.2e-179 632.9 507 63.3
Oeu026858.1 Olea europaea HOM05D005505 ORTHO05D006974 2.8e-179 632.5 455 70.3
EL10Ac7g18096 Beta vulgaris HOM05D005505 ORTHO05D006974 7.0e-178 627.9 487 65.3
AUR62001295 Chenopodium quinoa HOM05D005505 ORTHO05D006974 4.5e-177 625.2 495 64.8
ATR0787G156 Amborella trichopoda HOM05D005505 ORTHO05D006974 1.7e-176 623.2 495 65.5
Peaxi162Scf00047g01039 Petunia axillaris HOM05D005505 ORTHO05D006974 1.7e-176 623.2 512 62.9
PGSC0003DMG400029626 Solanum tuberosum HOM05D005505 ORTHO05D006974 1.7e-176 623.2 434 70.5
unitig_32.g10868 Utricularia gibba HOM05D005505 ORTHO05D006974 4.1e-170 602.1 453 65.6
Os03g0839100 Oryza sativa ssp. japonica HOM05D005505 ORTHO05D006974 7.0e-170 601.3 506 61.7
Zm00001eb211070 Zea mays HOM05D005505 ORTHO05D006974 7.2e-167 591.3 520 58.3
Hund05658 Selenicereus undatus HOM05D005505 ORTHO05D006974 1.6e-166 590.1 512 60.9
Sp3g21750 Schrenkiella parvula HOM05D005505 ORTHO05D006974 3.1e-162 575.9 422 67.8
Haze_11578 Corylus avellana HOM05D005505 ORTHO05D006974 2.3e-157 559.7 355 77.7
SHI00938 Sapria himalayana HOM05D005505 ORTHO05D006974 2.2e-155 553.1 456 61.2
Dinv38263 Davidia involucrata HOM05D005505 ORTHO05D006974 7.3e-151 538.1 379 72.0
Lj3A578G8 Lonicera japonica HOM05D005505 ORTHO05D006974 3.6e-150 535.8 371 72.5
SEGI_35699 Sequoiadendron giganteum HOM05D005505 ORTHO05D006974 5.8e-148 528.5 496 55.4
Lj3A579T16 Lonicera japonica HOM05D005505 ORTHO05D006974 1.4e-146 523.9 415 65.8
BcaC05g30344 Brassica carinata HOM05D005505 ORTHO05D007330 8.9e-141 504.6 486 56.4
SpUn0001_0240 Schrenkiella parvula HOM05D005505 ORTHO05D006974 3.2e-138 496.1 448 58.0
CDE02G0375 Ceratophyllum demersum HOM05D005505 ORTHO05D006974 9.6e-127 458.0 384 62.5
arahy.Tifrunner.gnm1.ann1.NU2AG4 Arachis hypogaea HOM05D005505 ORTHO05D006974 3.4e-124 449.5 369 62.3
Mapoly0028s0013 Marchantia polymorpha HOM05D005505 ORTHO05D006974 2.8e-118 429.9 508 46.1
Lj3A580T64 Lonicera japonica HOM05D005505 ORTHO05D006974 8.4e-115 418.3 391 59.8
Pp3c26_12110 Physcomitrium patens HOM05D005505 ORTHO05D006974 4.2e-114 416.0 463 49.5
SMO351G0576 Selaginella moellendorffii HOM05D005505 ORTHO05D006974 1.3e-110 404.4 439 49.7
SpUn0001_0260 Schrenkiella parvula HOM05D005505 ORTHO05D006974 3.8e-107 392.9 507 45.0
Lj3A565G17 Lonicera japonica HOM05D005505 ORTHO05D006974 6.2e-102 375.6 327 62.4
Gohir.D09G197033 Gossypium hirsutum HOM05D005505 ORTHO05D006974 1.2e-100 371.3 286 64.7
CAN.G220.36 Capsicum annuum HOM05D005505 ORTHO05D006974 3.7e-78 296.6 673 33.9
MCO15G051 Micromonas commoda HOM05D005505 ORTHO05D006974 1.9e-74 284.3 487 38.2
HPP92_019865 Vanilla planifolia HOM05D005505 ORTHO05D006974 1.4e-69 268.1 485 37.5
AL3G39020 Arabidopsis lyrata HOM05D005505 ORTHO05D006974 2.6e-68 263.8 242 57.9
Cre02.g112850 Chlamydomonas reinhardtii HOM05D005505 ORTHO05D006974 3.5e-68 263.5 462 35.9
Lj3A566G16 Lonicera japonica HOM05D005505 ORTHO05D006974 3.0e-56 223.8 163 70.6
PRCOL_00000308 Prasinoderma coloniale HOM05D005505 ORTHO05D006974 2.2e-54 217.6 368 35.9
BolC5t35086H Brassica oleracea HOM05D005505 ORTHO05D006974 2.8e-54 217.2 200 58.5
Cfa022008 Carpinus fangiana HOM05D005505 ORTHO05D006974 1.1e-50 205.3 466 31.5
CBR_g34015 Chara braunii HOM05D005505 ORTHO05D006974 3.4e-39 167.2 243 40.7
SpUn0242_NC2199 Schrenkiella parvula HOM05D005505 ORTHO05D006974 6.0e-36 156.4 102 74.5
Haze_11577 Corylus avellana HOM05D005505 ORTHO05D006974 2.3e-35 154.5 135 63.7
Lj3A578G7 Lonicera japonica HOM05D005505 ORTHO05D006974 1.6e-33 148.3 92 78.3
CBR_g34017 Chara braunii HOM05D005505 ORTHO05D006974 2.8e-33 147.5 208 40.4
Ca_29365_v3 Cicer arietinum L. HOM05D005505 ORTHO05D006974 7.3e-26 122.9 345 28.4
Actinidia34626 Actinidia chinensis HOM05D005505 ORTHO05D006974 1.7e-19 101.7 109 52.3
Lj3A579T17 Lonicera japonica HOM05D005505 ORTHO05D006974 2.6e-15 87.8 55 76.4
CDE09G0201 Ceratophyllum demersum HOM05D000090 ORTHO05D001584 2.1e-12 78.2 49 81.6
AL3G39220 Arabidopsis lyrata HOM05D005505 ORTHO05D000101 5.1e-11 73.6 44 72.7
Lj3A565T20 Lonicera japonica HOM05D005505 ORTHO05D006974 4.3e-10 70.5 66 60.6
Nitab4.5_0000031g0070 Nicotiana tabacum HOM05D000686 ORTHO05D000512 2.1e-09 68.2 403 25.8
Solyc04g025650.3 Solanum lycopersicum HOM05D000686 ORTHO05D000512 3.6e-09 67.4 407 24.6
Sopen04g013330 Solanum pennellii HOM05D000686 ORTHO05D000512 6.2e-09 66.6 408 25.0
DCAR_014050 Daucus carota HOM05D000686 ORTHO05D000512 1.1e-08 65.9 420 21.7
Nitab4.5_0000925g0140 Nicotiana tabacum HOM05D000686 ORTHO05D000512 7.6e-07 59.7 403 23.6
Medtr7g051967 Medicago truncatula HOM05D005505 ORTHO05D036509 1.3e-06 58.9 74 48.6
Lj7A415G61 Lonicera japonica HOM05D000686 ORTHO05D000512 8.4e-06 56.2 257 23.7


User provided reference genes

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