Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_5g03240 Fragaria vesca HOM05D006693 ORTHO05D008092 0.0e+00 2988.0 1487 100.0
FAN18G3090 Fragaria x ananassa HOM05D006693 ORTHO05D008092 0.0e+00 2909.0 1591 92.5
FAN13G0718 Fragaria x ananassa HOM05D006693 ORTHO05D008092 0.0e+00 2878.2 1583 92.4
FAN04G0987 Fragaria x ananassa HOM05D006693 ORTHO05D008092 0.0e+00 2875.1 1503 95.9
FAN04G3090 Fragaria x ananassa HOM05D006693 ORTHO05D008092 0.0e+00 2780.7 1503 93.3
RcHm_v2.0_Chr7g0196531 Rosa chinensis HOM05D006693 ORTHO05D008092 0.0e+00 2644.8 1476 90.2
Prupe.5G106900 Prunus persica HOM05D006693 ORTHO05D008092 0.0e+00 2349.7 1462 80.8
MD06G1091700 Malus domestica HOM05D006693 ORTHO05D008092 0.0e+00 2336.2 1511 78.6
QL02p033351 Quercus lobata HOM05D006693 ORTHO05D008092 0.0e+00 2053.9 1514 69.4
Cfa012249 Carpinus fangiana HOM05D006693 ORTHO05D008092 0.0e+00 2045.8 1517 69.1
CiPaw.12G089000 Carya illinoinensis HOM05D006693 ORTHO05D008092 0.0e+00 1999.9 1518 68.1
Atru.chr9.2109 Acer truncatum HOM05D006693 ORTHO05D008092 0.0e+00 1962.6 1514 66.1
Dinv38897 Davidia involucrata HOM05D006693 ORTHO05D008092 0.0e+00 1943.3 1546 65.0
Haze_08752 Corylus avellana HOM05D006693 ORTHO05D008092 0.0e+00 1912.5 1551 64.6
GSVIVG01019421001 Vitis vinifera HOM05D006693 ORTHO05D008092 0.0e+00 1909.4 1509 64.7
Potri.001G098700 Populus trichocarpa HOM05D006693 ORTHO05D008092 0.0e+00 1894.4 1505 64.9
Thecc.03G286900 Theobroma cacao HOM05D006693 ORTHO05D008092 0.0e+00 1878.6 1511 64.3
Ciclev10018484m.g Citrus clementina HOM05D006693 ORTHO05D008092 0.0e+00 1871.7 1516 64.6
Gorai.003G085400 Gossypium raimondii HOM05D006693 ORTHO05D008092 0.0e+00 1866.3 1511 64.1
Potri.003G132900 Populus trichocarpa HOM05D006693 ORTHO05D008092 0.0e+00 1864.4 1526 63.3
Duzib205G0177 Durio zibethinus HOM05D006693 ORTHO05D008092 0.0e+00 1863.6 1509 64.1
Gohir.D03G078700 Gossypium hirsutum HOM05D006693 ORTHO05D008092 0.0e+00 1850.5 1511 63.6
CSS0002391 Camellia sinensis var. sinensis HOM05D006693 ORTHO05D008092 0.0e+00 1842.0 1514 63.3
Sabra03G0095200 Salix brachista HOM05D006693 ORTHO05D008092 0.0e+00 1821.6 1538 62.0
Manes.02G016800 Manihot esculenta HOM05D006693 ORTHO05D008092 0.0e+00 1798.9 1483 63.9
Rhsim07G0087200 Rhododendron simsii HOM05D006693 ORTHO05D008092 0.0e+00 1797.3 1546 60.7
vmacro13975 Vaccinium macrocarpon HOM05D006693 ORTHO05D008092 0.0e+00 1715.3 1517 59.5
Glyma.08G018400 Glycine max HOM05D006693 ORTHO05D008092 0.0e+00 1702.6 1500 59.7
Glyma.05G212000 Glycine max HOM05D006693 ORTHO05D008092 0.0e+00 1695.6 1502 59.3
Nn6g32458 Nelumbo nucifera HOM05D006693 ORTHO05D008092 0.0e+00 1692.6 1513 58.2
MELO3C016336.2 Cucumis melo HOM05D006693 ORTHO05D008092 0.0e+00 1682.9 1512 58.5
Aqoxy5G04083 Aquilegia oxysepala HOM05D006693 ORTHO05D008092 0.0e+00 1679.8 1532 57.1
Lj4g0019588 Lotus japonicus HOM05D006693 ORTHO05D008092 0.0e+00 1676.4 1504 58.2
TPR.G12950 Trifolium pratense HOM05D006693 ORTHO05D008092 0.0e+00 1676.0 1506 58.2
TAR629G1282 Trochodendron aralioides HOM05D006693 ORTHO05D008092 0.0e+00 1673.3 1409 62.0
Phvul.002G293300 Phaseolus vulgaris HOM05D006693 ORTHO05D008092 0.0e+00 1671.4 1500 58.2
PGR031G3028 Punica granatum HOM05D006693 ORTHO05D008092 0.0e+00 1670.6 1507 57.9
VMungo0251G0136 Vigna mungo HOM05D006693 ORTHO05D008092 0.0e+00 1669.1 1500 58.5
Psat7g029760 Pisum sativum HOM05D006693 ORTHO05D008092 0.0e+00 1664.8 1513 58.0
Lalb_Chr16g0390281 Lupinus albus HOM05D006693 ORTHO05D008092 0.0e+00 1649.0 1502 57.9
Medtr8g098950 Medicago truncatula HOM05D006693 ORTHO05D008092 0.0e+00 1646.3 1507 57.7
Eucgr.D01808 Eucalyptus grandis HOM05D006693 ORTHO05D008092 0.0e+00 1635.2 1507 57.7
Lj2A178T45 Lonicera japonica HOM05D006693 ORTHO05D008092 0.0e+00 1629.8 1551 57.2
arahy.Tifrunner.gnm1.ann1.U3KDBF Arachis hypogaea HOM05D006693 ORTHO05D008092 0.0e+00 1624.0 1511 56.1
arahy.Tifrunner.gnm1.ann1.ILCZ5C Arachis hypogaea HOM05D006693 ORTHO05D008092 0.0e+00 1619.0 1508 56.1
Gohir.A02G105100 Gossypium hirsutum HOM05D006693 ORTHO05D008092 0.0e+00 1616.7 1343 62.9
PSO170G0731 Papaver somniferum HOM05D006693 ORTHO05D008092 0.0e+00 1612.4 1513 55.7
THA.LOC104814738 Tarenaya hassleriana HOM05D006693 ORTHO05D008092 0.0e+00 1611.7 1507 56.5
PSO063G3881 Papaver somniferum HOM05D006693 ORTHO05D008092 0.0e+00 1611.3 1515 55.8
Ca_10951_v3 Cicer arietinum L. HOM05D006693 ORTHO05D008092 0.0e+00 1606.3 1495 57.3
Lalb_Chr05g0224471 Lupinus albus HOM05D006693 ORTHO05D008092 0.0e+00 1599.7 1497 57.2
Cc08_g15300 Coffea canephora HOM05D006693 ORTHO05D008092 0.0e+00 1590.9 1524 56.2
Sopen08g029940 Solanum pennellii HOM05D006693 ORTHO05D008092 0.0e+00 1588.9 1530 55.4
Sc07g0009850 Simmondsia chinensis HOM05D006693 ORTHO05D008092 0.0e+00 1578.5 1518 55.1
Sp6g06170 Schrenkiella parvula HOM05D006693 ORTHO05D008092 0.0e+00 1576.2 1503 55.5
Migut.A00715 Erythranthe guttata HOM05D006693 ORTHO05D008092 0.0e+00 1567.4 1524 54.0
Peaxi162Scf00074g01720 Petunia axillaris HOM05D006693 ORTHO05D008092 0.0e+00 1557.7 1524 55.1
Thhalv10028363m.g Eutrema salsugineum HOM05D006693 ORTHO05D008092 0.0e+00 1555.0 1504 55.5
PGSC0003DMG400012182 Solanum tuberosum HOM05D006693 ORTHO05D008092 0.0e+00 1555.0 1531 54.1
AL6G45650 Arabidopsis lyrata HOM05D006693 ORTHO05D008092 0.0e+00 1551.6 1511 54.8
A09p27880 Brassica napus HOM05D006693 ORTHO05D008092 0.0e+00 1548.1 1503 55.0
SGA_v2.0_scaffold173G39133 Striga asiatica HOM05D006693 ORTHO05D008092 0.0e+00 1541.9 1525 53.9
Lsat_1_v5_gn_6_84960 Lactuca sativa HOM05D006693 ORTHO05D008092 0.0e+00 1540.4 1506 54.8
BcaB01g01624 Brassica carinata HOM05D006693 ORTHO05D008092 0.0e+00 1538.9 1505 54.9
EL10Ac5g12841 Beta vulgaris HOM05D006693 ORTHO05D008092 0.0e+00 1538.1 1486 54.3
BcaC04g21124 Brassica carinata HOM05D006693 ORTHO05D008092 0.0e+00 1537.3 1503 54.7
C09p35290 Brassica napus HOM05D006693 ORTHO05D008092 0.0e+00 1537.3 1503 54.7
BraA09t38356Z Brassica rapa HOM05D006693 ORTHO05D008092 0.0e+00 1536.5 1522 54.3
MBI06_g33534_MAGBIO Magnolia biondii HOM05D006693 ORTHO05D008092 0.0e+00 1536.2 1561 53.6
HanXRQChr03g0085981 Helianthus annuus HOM05D006693 ORTHO05D008092 0.0e+00 1530.8 1506 54.6
BolC9t56372H Brassica oleracea HOM05D006693 ORTHO05D008092 0.0e+00 1525.8 1522 54.0
SalBow1G8229 Salvia bowleyana HOM05D006693 ORTHO05D008092 0.0e+00 1524.6 1565 53.7
Carub.0006s3015 Capsella rubella HOM05D006693 ORTHO05D008092 0.0e+00 1521.5 1536 54.4
DCAR_008351 Daucus carota HOM05D006693 ORTHO05D008092 0.0e+00 1517.7 1501 54.4
MSTRG.11217 Avicennia marina HOM05D006693 ORTHO05D008092 0.0e+00 1511.9 1475 55.3
Aa31LG9G10920 Aethionema arabicum HOM05D006693 ORTHO05D008092 0.0e+00 1506.9 1570 53.1
Solyc08g081640.3 Solanum lycopersicum HOM05D006693 ORTHO05D008092 0.0e+00 1506.5 1528 53.8
AUR62010757 Chenopodium quinoa HOM05D006693 ORTHO05D008092 0.0e+00 1500.7 1523 53.7
Hund14266 Selenicereus undatus HOM05D006693 ORTHO05D008092 0.0e+00 1496.1 1492 53.6
AT4G11270 Arabidopsis thaliana HOM05D006693 ORTHO05D008092 0.0e+00 1493.8 1515 53.7
AUR62019758 Chenopodium quinoa HOM05D006693 ORTHO05D008092 0.0e+00 1483.4 1528 53.4
Oeu059571.2 Olea europaea HOM05D006693 ORTHO05D008092 0.0e+00 1472.2 1534 54.0
Sed0010800 Sechium edule HOM05D006693 ORTHO05D008092 0.0e+00 1457.2 1399 55.4
ECA240G0689 Erigeron canadensis HOM05D006693 ORTHO05D008092 0.0e+00 1448.3 1518 52.6
Ah.12g051930 Amaranthus hybridus HOM05D006693 ORTHO05D008092 0.0e+00 1444.1 1502 51.6
ClCG07G007830 Citrullus lanatus HOM05D006693 ORTHO05D008092 0.0e+00 1426.8 1346 56.9
Actinidia27362 Actinidia chinensis HOM05D006693 ORTHO05D008092 0.0e+00 1403.3 1352 56.5
ATR0721G120 Amborella trichopoda HOM05D006693 ORTHO05D008092 0.0e+00 1374.0 1581 48.5
CsaV3_4G006130 Cucumis sativus L. HOM05D006693 ORTHO05D008092 0.0e+00 1371.3 1296 56.5
AL6G45560 Arabidopsis lyrata HOM05D006693 ORTHO05D008092 0.0e+00 1318.5 1440 50.6
HPP92_021742 Vanilla planifolia HOM05D006693 ORTHO05D008092 0.0e+00 1276.2 1547 45.7
CDE02G1190 Ceratophyllum demersum HOM05D006693 ORTHO05D008092 0.0e+00 1270.4 1527 48.1
Nitab4.5_0007163g0010 Nicotiana tabacum HOM05D006693 ORTHO05D008092 0.0e+00 1219.9 1121 57.8
Zm00001eb382730 Zea mays HOM05D006693 ORTHO05D008092 0.0e+00 1172.5 1530 44.6
Nitab4.5_0014092g0010 Nicotiana tabacum HOM05D006693 ORTHO05D008092 0.0e+00 1156.0 1095 57.4
COL.COLO4_08357 Corchorus olitorius HOM05D006693 ORTHO05D008092 0.0e+00 1142.5 988 59.5
AagrBONN_evm.TU.Sc2ySwM_368.1009 Anthoceros agrestis HOM05D006693 ORTHO05D008092 4.3e-260 902.5 1620 36.4
CARHR255320 Cardamine hirsuta HOM05D006693 ORTHO05D008092 2.8e-227 793.5 900 49.8
Actinidia33729 Actinidia chinensis HOM05D006693 ORTHO05D008092 1.2e-193 681.8 484 74.6
COL.COLO4_08358 Corchorus olitorius HOM05D006693 ORTHO05D008092 1.5e-191 674.9 483 72.7
SMO358G0585 Selaginella moellendorffii HOM05D006693 ORTHO05D008092 7.5e-188 662.5 1498 31.7
SEGI_35152 Sequoiadendron giganteum HOM05D006693 ORTHO05D008092 7.5e-156 556.2 1028 35.0
Os06g0331300 Oryza sativa ssp. japonica HOM05D006693 ORTHO05D008092 1.3e-147 528.9 687 43.2
Cpa.g.sc180.1 Carica papaya HOM05D006693 ORTHO05D008092 9.9e-124 449.5 392 59.2
FAN08G3186 Fragaria x ananassa HOM05D006693 ORTHO05D008092 3.6e-97 361.3 196 91.8
SEGI_07995 Sequoiadendron giganteum HOM05D006693 ORTHO05D008092 8.8e-72 276.9 598 31.3
Cpa.g.sc180.2 Carica papaya HOM05D006693 ORTHO05D008092 2.6e-47 195.7 163 68.1
ClCG07G007840 Citrullus lanatus HOM05D006693 ORTHO05D008092 6.6e-43 181.0 107 76.6
Cpa.g.sc180.5 Carica papaya HOM05D006693 ORTHO05D008092 6.2e-33 147.9 91 72.5
Cpa.g.c42974 Carica papaya HOM05D006693 ORTHO05D008092 1.2e-25 123.6 80 73.8
Cpa.g.sc180.3 Carica papaya HOM05D006693 ORTHO05D008092 4.7e-25 121.7 81 74.1
Actinidia27361 Actinidia chinensis HOM05D006693 ORTHO05D008092 3.1e-24 119.0 98 60.2
CAN.G532.47 Capsicum annuum HOM05D006693 ORTHO05D008092 3.8e-22 112.1 89 58.4
SEGI_11223 Sequoiadendron giganteum HOM05D006693 ORTHO05D008092 3.9e-19 102.1 87 55.2
SEGI_38420 Sequoiadendron giganteum HOM05D006693 ORTHO05D008092 3.9e-19 102.1 87 55.2
Actinidia33728 Actinidia chinensis HOM05D006693 ORTHO05D008092 7.3e-18 97.8 67 77.6
Actinidia33727 Actinidia chinensis HOM05D006693 ORTHO05D008092 6.0e-12 78.2 74 55.4
Sabra01G0074000 Salix brachista HOM05D000115 ORTHO05D000464 7.6e-07 61.2 71 47.9


User provided reference genes

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