Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_5g01570 Fragaria vesca HOM05D006075 ORTHO05D007527 3.8e-274 947.6 484 100.0
FAN08G0877 Fragaria x ananassa HOM05D006075 ORTHO05D007527 4.2e-233 811.2 423 97.9
FAN18G0544 Fragaria x ananassa HOM05D006075 ORTHO05D007527 4.2e-233 811.2 423 97.9
FAN04G1557 Fragaria x ananassa HOM05D006075 ORTHO05D007527 8.8e-231 803.5 423 96.9
RcHm_v2.0_Chr7g0199111 Rosa chinensis HOM05D006075 ORTHO05D007527 1.5e-217 759.6 424 92.2
FAN08G0114 Fragaria x ananassa HOM05D006075 ORTHO05D007527 2.3e-210 735.7 412 93.2
Prupe.5G091900 Prunus persica HOM05D006075 ORTHO05D007527 4.7e-200 701.4 424 85.1
MD06G1073700 Malus domestica HOM05D006075 ORTHO05D007527 5.4e-196 688.0 424 82.8
MD04G1066500 Malus domestica HOM05D006075 ORTHO05D007527 4.7e-184 648.3 392 83.9
FAN13G2280 Fragaria x ananassa HOM05D006075 ORTHO05D007527 2.9e-181 639.0 334 97.3
CANSAT21G0515 Cannabis sativa HOM05D006075 ORTHO05D007527 1.9e-177 626.3 416 76.2
QL12p017421 Quercus lobata HOM05D006075 ORTHO05D007527 3.4e-174 615.5 423 74.5
Ciclev10019953m.g Citrus clementina HOM05D006075 ORTHO05D007527 2.9e-173 612.5 424 73.8
CiPaw.11G140500 Carya illinoinensis HOM05D006075 ORTHO05D007527 2.4e-172 609.4 424 73.6
Atru.chr9.1549 Acer truncatum HOM05D006075 ORTHO05D007527 5.4e-172 608.2 425 74.1
Glyma.17G131000 Glycine max HOM05D006075 ORTHO05D007527 9.6e-169 597.4 410 72.9
Potri.001G109200 Populus trichocarpa HOM05D006075 ORTHO05D007527 1.3e-168 597.0 414 73.2
Lj4g0025720 Lotus japonicus HOM05D006075 ORTHO05D007527 4.8e-168 595.1 410 72.4
CSS0042428 Camellia sinensis var. sinensis HOM05D006075 ORTHO05D007527 5.3e-167 591.7 428 71.5
Sabra01G0082500 Salix brachista HOM05D006075 ORTHO05D007527 9.0e-167 590.9 426 70.9
TWI81G0173 Tripterygium wilfordii HOM05D006075 ORTHO05D007527 3.4e-166 589.0 414 73.2
Medtr4g102820 Medicago truncatula HOM05D006075 ORTHO05D007527 4.5e-166 588.6 429 69.9
GSVIVG01019817001 Vitis vinifera HOM05D006075 ORTHO05D007527 5.8e-166 588.2 411 72.7
Lj2A193G48 Lonicera japonica HOM05D006075 ORTHO05D007527 7.6e-166 587.8 417 73.6
Gohir.A01G010200 Gossypium hirsutum HOM05D006075 ORTHO05D007527 9.9e-166 587.4 409 73.3
Dinv37681 Davidia involucrata HOM05D006075 ORTHO05D007527 1.3e-165 587.0 425 72.0
Phvul.003G211900 Phaseolus vulgaris HOM05D006075 ORTHO05D007527 1.7e-165 586.6 410 72.2
Gorai.002G011900 Gossypium raimondii HOM05D006075 ORTHO05D007527 6.4e-165 584.7 432 69.9
Thecc.02G127300 Theobroma cacao HOM05D006075 ORTHO05D007527 6.4e-165 584.7 441 69.2
TPR.G19222 Trifolium pratense HOM05D006075 ORTHO05D007527 6.4e-165 584.7 419 70.2
Nn6g34229 Nelumbo nucifera HOM05D006075 ORTHO05D007527 8.4e-165 584.3 419 71.4
TPR.G23260 Trifolium pratense HOM05D006075 ORTHO05D007527 2.4e-164 582.8 410 70.7
Manes.01G066100 Manihot esculenta HOM05D006075 ORTHO05D007527 7.1e-164 581.3 424 70.3
Eucgr.E00536 Eucalyptus grandis HOM05D006075 ORTHO05D007527 9.3e-164 580.9 411 72.7
Gohir.D01G009800 Gossypium hirsutum HOM05D006075 ORTHO05D007527 1.6e-163 580.1 432 69.4
Psat4g067760 Pisum sativum HOM05D006075 ORTHO05D007527 2.7e-163 579.3 422 68.7
Rhsim07G0094000 Rhododendron simsii HOM05D006075 ORTHO05D007527 3.5e-163 578.9 446 68.6
arahy.Tifrunner.gnm1.ann1.M2EVQD Arachis hypogaea HOM05D006075 ORTHO05D007527 9.6e-161 570.9 411 70.8
Psat1g082240 Pisum sativum HOM05D006075 ORTHO05D007527 2.1e-160 569.7 422 67.3
PGR042G3166 Punica granatum HOM05D006075 ORTHO05D007527 2.8e-160 569.3 432 67.4
Oeu011664.1 Olea europaea HOM05D006075 ORTHO05D007527 4.8e-160 568.5 425 70.1
Lalb_Chr09g0333281 Lupinus albus HOM05D006075 ORTHO05D007527 1.1e-159 567.4 411 70.1
Lalb_Chr16g0389751 Lupinus albus HOM05D006075 ORTHO05D007527 9.0e-159 564.3 411 70.3
MELO3C005634.2 Cucumis melo HOM05D006075 ORTHO05D007527 8.4e-157 557.8 424 68.9
PSO478G2556 Papaver somniferum HOM05D006075 ORTHO05D007527 8.4e-157 557.8 430 66.0
CsaV3_5G003210 Cucumis sativus L. HOM05D006075 ORTHO05D007527 3.2e-156 555.8 424 68.9
Sopen08g028750 Solanum pennellii HOM05D006075 ORTHO05D007527 5.5e-156 555.1 423 67.6
PSO782G2103 Papaver somniferum HOM05D006075 ORTHO05D007527 1.2e-155 553.9 430 65.8
CAN.G981.23 Capsicum annuum HOM05D006075 ORTHO05D007527 4.6e-155 552.0 410 68.8
HanXRQChr03g0085661 Helianthus annuus HOM05D006075 ORTHO05D007527 4.6e-155 552.0 425 69.2
Solyc08g080420.4 Solanum lycopersicum HOM05D006075 ORTHO05D007527 4.6e-155 552.0 423 67.1
THA.LOC104818186 Tarenaya hassleriana HOM05D006075 ORTHO05D007527 1.3e-154 550.4 414 69.3
Sed0007766 Sechium edule HOM05D006075 ORTHO05D007527 1.1e-153 547.4 411 70.3
arahy.Tifrunner.gnm1.ann1.S8HR28 Arachis hypogaea HOM05D006075 ORTHO05D007527 1.5e-153 547.0 411 69.3
Sp2g01480 Schrenkiella parvula HOM05D006075 ORTHO05D007527 1.9e-153 546.6 423 69.3
Carub.0002s0185 Capsella rubella HOM05D006075 ORTHO05D007527 7.4e-153 544.7 422 68.0
MSTRG.13821 Avicennia marina HOM05D006075 ORTHO05D007527 8.2e-152 541.2 409 66.3
AL2G12410 Arabidopsis lyrata HOM05D006075 ORTHO05D007527 1.4e-151 540.4 411 68.6
Thhalv10023435m.g Eutrema salsugineum HOM05D006075 ORTHO05D007527 1.4e-151 540.4 422 67.3
AT1G63110 Arabidopsis thaliana HOM05D006075 ORTHO05D007527 1.8e-151 540.0 423 67.6
Cc08_g14070 Coffea canephora HOM05D006075 ORTHO05D007527 2.4e-151 539.7 409 69.4
Migut.E01290 Erythranthe guttata HOM05D006075 ORTHO05D007527 2.4e-151 539.7 423 66.7
ECA240G3011 Erigeron canadensis HOM05D006075 ORTHO05D007527 5.3e-151 538.5 486 60.5
Aa31LG2G590 Aethionema arabicum HOM05D006075 ORTHO05D007527 7.6e-150 534.6 435 65.5
BcaC04g22472 Brassica carinata HOM05D006075 ORTHO05D007527 8.4e-149 531.2 424 66.7
BcaB07g31383 Brassica carinata HOM05D006075 ORTHO05D007527 1.1e-148 530.8 424 66.3
VMungo1215G1399 Vigna mungo HOM05D006075 ORTHO05D007527 3.2e-148 529.3 371 72.2
A09p15680 Brassica napus HOM05D006075 ORTHO05D007527 2.7e-147 526.2 427 67.0
BraA09t37209Z Brassica rapa HOM05D006075 ORTHO05D007527 2.7e-147 526.2 427 67.0
C09p18910 Brassica napus HOM05D006075 ORTHO05D007527 1.8e-146 523.5 426 66.4
EL10Ac5g12736 Beta vulgaris HOM05D006075 ORTHO05D007527 3.9e-146 522.3 422 64.5
Lsat_1_v5_gn_6_87521 Lactuca sativa HOM05D006075 ORTHO05D007527 2.5e-145 519.6 425 65.6
TAR629G3145 Trochodendron aralioides HOM05D006075 ORTHO05D007527 2.2e-144 516.5 368 71.5
AT1G12730 Arabidopsis thaliana HOM05D006075 ORTHO05D007527 2.9e-141 506.1 411 64.2
Os02g0688900 Oryza sativa ssp. japonica HOM05D006075 ORTHO05D007527 1.1e-140 504.2 412 63.6
BolC9t54793H Brassica oleracea HOM05D006075 ORTHO05D007527 3.2e-140 502.7 429 64.8
Actinidia05225 Actinidia chinensis HOM05D006075 ORTHO05D007527 1.9e-137 493.4 425 63.8
SalBow1G6580 Salvia bowleyana HOM05D006075 ORTHO05D007527 1.7e-136 490.3 526 52.7
HPP92_001310 Vanilla planifolia HOM05D006075 ORTHO05D007527 1.4e-135 487.3 411 60.6
Carub.0001s1243 Capsella rubella HOM05D006075 ORTHO05D007527 6.9e-135 485.0 411 62.3
Peaxi162Scf00714g00528 Petunia axillaris HOM05D006075 ORTHO05D007527 2.5e-132 476.5 490 54.9
CDE11G0531 Ceratophyllum demersum HOM05D006075 ORTHO05D007527 2.1e-131 473.4 436 58.5
SGA_v2.0_scaffold385G50455 Striga asiatica HOM05D006075 ORTHO05D007527 1.8e-130 470.3 410 61.5
SEGI_27555 Sequoiadendron giganteum HOM05D006075 ORTHO05D007527 4.5e-126 455.7 419 57.3
vmacro13924 Vaccinium macrocarpon HOM05D006075 ORTHO05D007527 1.4e-124 450.7 419 60.1
Sc01g0008740 Simmondsia chinensis HOM05D006075 ORTHO05D007527 3.2e-124 449.5 358 66.2
TAR629G0535 Trochodendron aralioides HOM05D006075 ORTHO05D007527 2.1e-123 446.8 378 64.8
HanXRQChr11g0323321 Helianthus annuus HOM05D006075 ORTHO05D007527 8.8e-122 441.4 426 59.4
AL1G24320 Arabidopsis lyrata HOM05D006075 ORTHO05D007527 1.5e-121 440.7 413 59.6
ClCG01G003090 Citrullus lanatus HOM05D006075 ORTHO05D007527 1.5e-121 440.7 427 59.3
Glyma.05G049100 Glycine max HOM05D006075 ORTHO05D007527 7.4e-121 438.3 359 64.6
COL.COLO4_32412 Corchorus olitorius HOM05D006075 ORTHO05D007527 4.0e-114 416.0 474 52.5
Manes.02G026900 Manihot esculenta HOM05D006075 ORTHO05D007527 6.7e-114 415.2 470 53.4
Duzib052G1148 Durio zibethinus HOM05D006075 ORTHO05D007527 5.9e-110 402.1 443 53.3
Nitab4.5_0002853g0070 Nicotiana tabacum HOM05D006075 ORTHO05D007527 3.8e-109 399.4 459 51.4
Nitab4.5_0016932g0010 Nicotiana tabacum HOM05D006075 ORTHO05D007527 3.6e-107 392.9 424 53.3
unitig_744.g24646 Utricularia gibba HOM05D006075 ORTHO05D007527 1.2e-105 387.9 427 54.1
PSO478G1113 Papaver somniferum HOM05D006075 ORTHO05D007527 5.7e-105 385.6 281 69.8
PGSC0003DMG400003033 Solanum tuberosum HOM05D006075 ORTHO05D007527 4.8e-104 382.5 423 51.8
CARHR048400 Cardamine hirsuta HOM05D006075 ORTHO05D007527 1.6e-99 367.5 305 63.6
CARHR013020 Cardamine hirsuta HOM05D006075 ORTHO05D007527 1.8e-95 354.0 323 58.2
ATR0322G053 Amborella trichopoda HOM05D006075 ORTHO05D007527 4.1e-95 352.8 289 64.4
Pp3c9_23740 Physcomitrium patens HOM05D006075 ORTHO05D007527 5.9e-94 349.0 429 47.3
Ah.12g057560 Amaranthus hybridus HOM05D006075 ORTHO05D007527 3.8e-93 346.3 425 49.6
Zm00001eb251050 Zea mays HOM05D006075 ORTHO05D007527 6.1e-91 339.0 306 57.5
Mapoly0001s0316 Marchantia polymorpha HOM05D006075 ORTHO05D007527 8.0e-91 338.6 423 47.0
SMO270G0127 Selaginella moellendorffii HOM05D006075 ORTHO05D007527 4.6e-86 322.8 430 45.6
Hund14727 Selenicereus undatus HOM05D006075 ORTHO05D007527 3.9e-85 319.7 377 52.8
Cpa.g.sc74.79 Carica papaya HOM05D006075 ORTHO05D007527 6.6e-85 318.9 301 55.1
Haze_08940 Corylus avellana HOM05D006075 ORTHO05D007527 5.6e-84 315.8 230 72.2
Sed0016840 Sechium edule HOM05D006075 ORTHO05D007527 3.0e-77 293.5 226 68.6
Dinv39003 Davidia involucrata HOM05D006075 ORTHO05D007527 3.4e-73 280.0 286 55.6
AagrBONN_evm.TU.Sc2ySwM_117.1004 Anthoceros agrestis HOM05D006075 ORTHO05D007527 1.7e-72 277.7 367 45.0
CSS0009197 Camellia sinensis var. sinensis HOM05D006075 ORTHO05D007527 2.1e-59 234.2 378 41.8
Ca_20251_v3 Cicer arietinum L. HOM05D006075 ORTHO05D007527 6.4e-56 222.6 164 68.3
CBR_g17923 Chara braunii HOM05D006075 ORTHO05D007527 1.1e-50 205.3 721 26.4
Os01g0870201 Oryza sativa ssp. japonica HOM05D006075 ORTHO05D007527 1.3e-48 198.4 416 35.3
TAR636G1294 Trochodendron aralioides HOM05D006075 ORTHO05D007527 1.1e-47 195.3 169 62.1
AUR62017286 Chenopodium quinoa HOM05D006075 ORTHO05D007527 2.4e-47 194.1 185 60.0
AUR62010644 Chenopodium quinoa HOM05D006075 ORTHO05D007527 3.3e-36 157.1 186 50.0
MCO15G123 Micromonas commoda HOM05D006075 ORTHO05D007527 2.8e-27 127.5 415 29.4
Eucgr.H02816 Eucalyptus grandis HOM05D005128 ORTHO05D006227 1.1e-26 125.6 76 76.3
ATR0322G060 Amborella trichopoda HOM05D006075 ORTHO05D007527 1.7e-24 118.2 85 67.1
PRCOL_00005762 Prasinoderma coloniale HOM05D006075 ORTHO05D007527 2.3e-21 107.8 484 26.0
TAR636G2798 Trochodendron aralioides HOM05D006075 ORTHO05D007527 6.1e-14 83.2 48 83.3
Actinidia27405 Actinidia chinensis HOM05D006075 ORTHO05D007527 2.3e-13 81.3 63 66.7
Cre03.g150400 Chlamydomonas reinhardtii HOM05D006075 ORTHO05D007527 2.6e-12 77.8 227 31.7
C09p15950 Brassica napus HOM05D006075 ORTHO05D007527 2.4e-10 71.2 49 73.5
BolC9t54506H Brassica oleracea HOM05D006075 ORTHO05D007527 2.0e-09 68.2 49 71.4
Lsat_1_v5_gn_5_145360 Lactuca sativa HOM05D000561 ORTHO05D008162 1.7e-08 65.1 70 48.6


User provided reference genes

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