Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_5g01080 Fragaria vesca HOM05D004703 ORTHO05D005801 1.5e-164 582.8 304 100.0
FAN18G3460 Fragaria x ananassa HOM05D004703 ORTHO05D005801 1.5e-159 566.2 327 92.4
FAN13G0401 Fragaria x ananassa HOM05D004703 ORTHO05D005801 1.5e-156 556.2 329 90.6
RcHm_v2.0_Chr7g0200241 Rosa chinensis HOM05D004703 ORTHO05D005801 1.8e-141 506.1 292 88.4
Prupe.5G084800 Prunus persica HOM05D004703 ORTHO05D005801 7.2e-130 467.6 311 80.1
MD04G1073000 Malus domestica HOM05D004703 ORTHO05D005801 2.0e-127 459.5 297 80.1
FAN08G2483 Fragaria x ananassa HOM05D004703 ORTHO05D005801 8.5e-123 444.1 266 89.1
TAR629G2760 Trochodendron aralioides HOM05D004703 ORTHO05D005801 5.2e-120 434.9 291 75.9
RcHm_v2.0_Chr6g0265101 Rosa chinensis HOM05D004703 ORTHO05D005801 1.1e-117 427.2 278 77.7
RcHm_v2.0_Chr6g0265181 Rosa chinensis HOM05D004703 ORTHO05D005801 1.8e-117 426.4 278 77.7
CANSAT21G0478 Cannabis sativa HOM05D004703 ORTHO05D005801 2.4e-117 426.0 275 78.2
QL12p016126 Quercus lobata HOM05D004703 ORTHO05D005801 2.4e-117 426.0 311 72.0
QL12p016291 Quercus lobata HOM05D004703 ORTHO05D005801 2.4e-117 426.0 311 72.0
Haze_09002 Corylus avellana HOM05D004703 ORTHO05D005801 9.1e-117 424.1 306 73.2
Lj4g0003091 Lotus japonicus HOM05D004703 ORTHO05D005801 5.9e-116 421.4 283 74.2
Actinidia14493 Actinidia chinensis HOM05D004703 ORTHO05D005801 2.9e-115 419.1 321 70.1
Lalb_Chr05g0225211 Lupinus albus HOM05D004703 ORTHO05D005801 2.9e-115 419.1 297 70.7
CSS0042147 Camellia sinensis var. sinensis HOM05D004703 ORTHO05D005801 6.5e-115 417.9 281 76.2
PGR042G1634 Punica granatum HOM05D004703 ORTHO05D005801 6.5e-115 417.9 304 72.4
DCAR_006785 Daucus carota HOM05D004703 ORTHO05D005801 4.2e-114 415.2 271 74.5
Ca_12294_v3 Cicer arietinum L. HOM05D004703 ORTHO05D005801 5.5e-114 414.8 309 70.2
AL6G46750 Arabidopsis lyrata HOM05D004703 ORTHO05D005801 9.4e-114 414.1 295 72.2
VMungo0251G1252 Vigna mungo HOM05D004703 ORTHO05D005801 9.4e-114 414.1 276 74.3
Eucgr.E00504 Eucalyptus grandis HOM05D004703 ORTHO05D005801 1.2e-113 413.7 297 72.1
GSVIVG01019903001 Vitis vinifera HOM05D004703 ORTHO05D005801 2.1e-113 412.9 268 75.7
COL.COLO4_23815 Corchorus olitorius HOM05D004703 ORTHO05D005801 3.6e-113 412.1 298 71.1
Glyma.05G054900 Glycine max HOM05D004703 ORTHO05D005801 4.7e-113 411.8 306 69.6
CARHR254310 Cardamine hirsuta HOM05D004703 ORTHO05D005801 6.1e-113 411.4 302 69.5
CiPaw.11G143800 Carya illinoinensis HOM05D004703 ORTHO05D005801 8.0e-113 411.0 267 76.8
Glyma.05G054800 Glycine max HOM05D004703 ORTHO05D005801 1.0e-112 410.6 306 69.0
Potri.003G118300 Populus trichocarpa HOM05D004703 ORTHO05D005801 1.0e-112 410.6 298 71.8
Thecc.03G266100 Theobroma cacao HOM05D004703 ORTHO05D005801 1.4e-112 410.2 305 70.5
Manes.01G070700 Manihot esculenta HOM05D004703 ORTHO05D005801 1.8e-112 409.8 300 71.7
AT4G11980 Arabidopsis thaliana HOM05D004703 ORTHO05D005801 2.3e-112 409.5 300 70.7
Ciclev10021310m.g Citrus clementina HOM05D004703 ORTHO05D005801 2.3e-112 409.5 265 75.1
TPR.G37619 Trifolium pratense HOM05D004703 ORTHO05D005801 2.3e-112 409.5 275 74.5
Cc08_g13610 Coffea canephora HOM05D004703 ORTHO05D005801 3.0e-112 409.1 279 72.4
Dinv37721 Davidia involucrata HOM05D004703 ORTHO05D005801 3.0e-112 409.1 267 76.0
Atru.chr9.1491 Acer truncatum HOM05D004703 ORTHO05D005801 2.6e-111 406.0 277 72.2
CsaV3_5G003450 Cucumis sativus L. HOM05D004703 ORTHO05D005801 3.4e-111 405.6 288 71.5
Duzib084G1157 Durio zibethinus HOM05D004703 ORTHO05D005801 3.4e-111 405.6 284 72.9
PGSC0003DMG400003941 Solanum tuberosum HOM05D004703 ORTHO05D005801 4.4e-111 405.2 267 75.3
Aqoxy7G00537 Aquilegia oxysepala HOM05D004703 ORTHO05D005801 1.3e-110 403.7 268 74.6
Medtr4g101830 Medicago truncatula HOM05D004703 ORTHO05D005801 1.3e-110 403.7 287 72.5
Sed0028019 Sechium edule HOM05D004703 ORTHO05D005801 1.3e-110 403.7 307 67.1
Thhalv10028825m.g Eutrema salsugineum HOM05D004703 ORTHO05D005801 1.7e-110 403.3 298 70.5
Nitab4.5_0005167g0040 Nicotiana tabacum HOM05D004703 ORTHO05D005801 1.7e-110 403.3 286 72.7
Nitab4.5_0012494g0020 Nicotiana tabacum HOM05D004703 ORTHO05D005801 1.7e-110 403.3 289 72.0
Carub.0006s3108 Capsella rubella HOM05D004703 ORTHO05D005801 2.8e-110 402.5 297 70.7
Phvul.003G216900 Phaseolus vulgaris HOM05D004703 ORTHO05D005801 2.8e-110 402.5 276 72.5
TWI15G0205 Tripterygium wilfordii HOM05D004703 ORTHO05D005801 6.3e-110 401.4 314 67.5
Solyc08g079820.3 Solanum lycopersicum HOM05D004703 ORTHO05D005801 8.3e-110 401.0 272 74.3
Hma1.2p1_0138F.1_g062820 Hydrangea macrophylla HOM05D004703 ORTHO05D005801 1.1e-109 400.6 260 75.8
Sopen08g028180 Solanum pennellii HOM05D004703 ORTHO05D005801 1.4e-109 400.2 288 71.2
Migut.A00879 Erythranthe guttata HOM05D004703 ORTHO05D005801 3.1e-109 399.1 273 71.8
Gohir.A09G193900 Gossypium hirsutum HOM05D004703 ORTHO05D005801 4.1e-109 398.7 313 67.4
Lsat_1_v5_gn_6_10661 Lactuca sativa HOM05D004703 ORTHO05D005801 5.4e-109 398.3 295 69.2
Gohir.D09G188100 Gossypium hirsutum HOM05D004703 ORTHO05D005801 1.6e-108 396.7 313 67.7
Gorai.006G210900 Gossypium raimondii HOM05D004703 ORTHO05D005801 2.7e-108 396.0 313 67.7
Oeu001909.1 Olea europaea HOM05D004703 ORTHO05D005801 3.5e-108 395.6 267 71.9
ECA233G5834 Erigeron canadensis HOM05D004703 ORTHO05D005801 1.0e-107 394.0 273 72.9
THA.LOC104806355 Tarenaya hassleriana HOM05D004703 ORTHO05D005801 1.0e-107 394.0 287 70.4
Hund14696 Selenicereus undatus HOM05D004703 ORTHO05D005801 1.7e-107 393.3 265 71.7
BcaB01g01695 Brassica carinata HOM05D004703 ORTHO05D005801 8.6e-107 391.0 302 69.2
AUR62017343 Chenopodium quinoa HOM05D004703 ORTHO05D005801 3.3e-106 389.0 270 71.5
BcaC04g21182 Brassica carinata HOM05D004703 ORTHO05D005801 9.5e-106 387.5 304 67.8
C09p34490 Brassica napus HOM05D004703 ORTHO05D005801 9.5e-106 387.5 304 67.8
Ah.12g053460 Amaranthus hybridus HOM05D004703 ORTHO05D005801 1.2e-105 387.1 273 70.0
Ah.12g057950 Amaranthus hybridus HOM05D004703 ORTHO05D005801 1.2e-105 387.1 273 70.0
arahy.Tifrunner.gnm1.ann1.RRY62Q Arachis hypogaea HOM05D004703 ORTHO05D005801 1.2e-105 387.1 234 81.2
BolC9t56293H Brassica oleracea HOM05D004703 ORTHO05D005801 1.2e-105 387.1 305 67.5
Sabra03G0082300 Salix brachista HOM05D004703 ORTHO05D005801 3.6e-105 385.6 320 65.6
Peaxi162Scf00620g00231 Petunia axillaris HOM05D004703 ORTHO05D005801 4.7e-105 385.2 312 65.7
AUR62010550 Chenopodium quinoa HOM05D004703 ORTHO05D005801 1.0e-104 384.0 265 71.3
SGA_v2.0_scaffold37G14871 Striga asiatica HOM05D004703 ORTHO05D005801 1.4e-104 383.6 277 69.7
EL10Ac5g12672 Beta vulgaris HOM05D004703 ORTHO05D005801 6.8e-104 381.3 299 65.9
VMungo0251G1928 Vigna mungo HOM05D004703 ORTHO05D005801 8.9e-104 380.9 322 62.1
ClCG01G003390 Citrullus lanatus HOM05D004703 ORTHO05D005801 2.0e-103 379.8 295 66.8
MBI04_g28556_MAGBIO Magnolia biondii HOM05D004703 ORTHO05D005801 2.0e-103 379.8 273 71.1
Os06g0129700 Oryza sativa ssp. japonica HOM05D004703 ORTHO05D005801 5.7e-103 378.3 267 67.8
PSO478G3534 Papaver somniferum HOM05D004703 ORTHO05D005801 5.7e-103 378.3 246 74.0
Lj2A203G54 Lonicera japonica HOM05D004703 ORTHO05D005801 1.3e-102 377.1 232 79.3
PSO782G3959 Papaver somniferum HOM05D004703 ORTHO05D005801 1.7e-102 376.7 299 65.9
CDE04G3458 Ceratophyllum demersum HOM05D004703 ORTHO05D005801 2.8e-102 375.9 293 64.8
CSS0006775 Camellia sinensis var. sinensis HOM05D004703 ORTHO05D005801 3.7e-102 375.6 232 78.4
PSO478G3008 Papaver somniferum HOM05D004703 ORTHO05D005801 3.7e-102 375.6 294 67.0
Rhsim08G0184400 Rhododendron simsii HOM05D004703 ORTHO05D005801 1.1e-101 374.0 316 63.0
HanXRQChr07g0186971 Helianthus annuus HOM05D004703 ORTHO05D005801 4.1e-101 372.1 354 58.5
HPP92_020651 Vanilla planifolia HOM05D004703 ORTHO05D005801 1.2e-100 370.5 272 67.3
CAN.G630.24 Capsicum annuum HOM05D004703 ORTHO05D005801 7.8e-100 367.9 231 76.6
Ah.02g116260 Amaranthus hybridus HOM05D004703 ORTHO05D005801 1.0e-99 367.5 268 66.8
Psat4g069480 Pisum sativum HOM05D004703 ORTHO05D005801 2.3e-99 366.3 236 76.7
unitig_22.g5479 Utricularia gibba HOM05D004703 ORTHO05D005801 2.3e-99 366.3 291 62.5
MELO3C005608.2 Cucumis melo HOM05D004703 ORTHO05D005801 2.9e-99 365.9 392 52.8
Cpa.g.sc29.48 Carica papaya HOM05D004703 ORTHO05D005801 6.8e-96 354.8 310 62.6
A09p27170 Brassica napus HOM05D004703 ORTHO05D005801 1.1e-93 347.4 262 67.2
CBR_g30593 Chara braunii HOM05D004703 ORTHO05D005801 6.0e-92 341.7 257 63.8
Aa31LG9G10490 Aethionema arabicum HOM05D004703 ORTHO05D005801 2.5e-90 336.3 294 62.2
arahy.Tifrunner.gnm1.ann1.TVWC12 Arachis hypogaea HOM05D004703 ORTHO05D005801 4.0e-88 328.9 242 70.2
Mapoly0093s0020 Marchantia polymorpha HOM05D004703 ORTHO05D005801 8.3e-86 321.2 257 60.7
SalBow6G2643 Salvia bowleyana HOM05D004703 ORTHO05D005801 6.0e-84 315.1 194 76.8
Pp3c15_11750 Physcomitrium patens HOM05D004703 ORTHO05D005801 7.8e-84 314.7 256 59.8
RcHm_v2.0_Chr4g0403961 Rosa chinensis HOM05D004703 ORTHO05D005801 2.5e-82 309.7 196 84.7
SMO140G0070 Selaginella moellendorffii HOM05D004703 ORTHO05D005801 1.3e-75 287.3 201 66.7
Sc07g0009460 Simmondsia chinensis HOM05D004703 ORTHO05D005801 3.9e-75 285.8 198 72.2
vmacro19246 Vaccinium macrocarpon HOM05D004703 ORTHO05D005801 5.1e-75 285.4 203 73.9
RcHm_v2.0_Chr0c37g0502981 Rosa chinensis HOM05D004703 ORTHO05D005801 7.3e-74 281.6 203 74.4
Nn1g00505 Nelumbo nucifera HOM05D004703 ORTHO05D005801 6.4e-70 268.5 223 64.6
Zm00001eb378400 Zea mays HOM05D004703 ORTHO05D005801 5.6e-66 255.4 215 64.2
Sp6g05530 Schrenkiella parvula HOM05D004703 ORTHO05D005801 1.5e-63 247.3 203 68.0
Haze_13993 Corylus avellana HOM05D004703 ORTHO05D005801 7.6e-63 245.0 202 68.3
arahy.Tifrunner.gnm1.ann1.HPWZ3I Arachis hypogaea HOM05D004703 ORTHO05D005801 9.9e-63 244.6 159 76.1
AagrBONN_evm.TU.Sc2ySwM_344.4389 Anthoceros agrestis HOM05D004703 ORTHO05D005801 1.6e-57 227.3 221 53.8
BcaB04g18565 Brassica carinata HOM05D004703 ORTHO05D005801 9.9e-55 218.0 171 66.7
BcaB02g09202 Brassica carinata HOM05D004703 ORTHO05D005801 1.1e-53 214.5 171 65.5
MSTRG.25560 Avicennia marina HOM05D004703 ORTHO05D005801 1.8e-51 207.2 128 79.7
BcaB02g11533 Brassica carinata HOM05D004703 ORTHO05D005801 2.8e-49 199.9 228 51.3
ATR0905G001 Amborella trichopoda HOM05D004703 ORTHO05D005801 3.4e-47 193.0 124 70.2
arahy.Tifrunner.gnm1.ann1.R8Q162 Arachis hypogaea HOM05D004703 ORTHO05D005801 8.4e-46 188.3 157 66.2
arahy.Tifrunner.gnm1.ann1.0W2QGA Arachis hypogaea HOM05D004703 ORTHO05D005801 2.5e-45 186.8 163 65.0
arahy.Tifrunner.gnm1.ann1.U0A30G Arachis hypogaea HOM05D004703 ORTHO05D005801 5.5e-45 185.7 200 57.0
arahy.Tifrunner.gnm1.ann1.QD9SPH Arachis hypogaea HOM05D004703 ORTHO05D005801 7.1e-45 185.3 157 65.6
arahy.Tifrunner.gnm1.ann1.DGE7ZD Arachis hypogaea HOM05D004703 ORTHO05D005801 1.6e-44 184.1 172 60.5
arahy.Tifrunner.gnm1.ann1.TN8QBF Arachis hypogaea HOM05D004703 ORTHO05D005801 1.8e-43 180.6 157 65.6
arahy.Tifrunner.gnm1.ann1.KBZV3C Arachis hypogaea HOM05D004703 ORTHO05D005801 2.3e-43 180.3 200 55.0
arahy.Tifrunner.gnm1.ann1.7IH5G2 Arachis hypogaea HOM05D004703 ORTHO05D005801 8.7e-43 178.3 172 59.9
arahy.Tifrunner.gnm1.ann1.J3Q2MP Arachis hypogaea HOM05D004703 ORTHO05D005801 4.3e-42 176.0 158 62.7
RcHm_v2.0_Chr4g0425481 Rosa chinensis HOM05D004703 ORTHO05D005801 1.3e-38 164.5 178 58.4
BcaC01g04204 Brassica carinata HOM05D004703 ORTHO05D005801 1.7e-38 164.1 108 75.9
arahy.Tifrunner.gnm1.ann1.EX0EXI Arachis hypogaea HOM05D004703 ORTHO05D005801 1.6e-36 157.5 200 51.0
arahy.Tifrunner.gnm1.ann1.QT2LTC Arachis hypogaea HOM05D004703 ORTHO05D005801 1.6e-36 157.5 146 61.6
Zm00001eb279110 Zea mays HOM05D004703 ORTHO05D005801 3.9e-35 152.9 104 73.1
Zm00001eb113910 Zea mays HOM05D004703 ORTHO05D005801 2.2e-33 147.1 105 70.5
arahy.Tifrunner.gnm1.ann1.XKXY1P Arachis hypogaea HOM05D004703 ORTHO05D005801 2.8e-33 146.7 94 80.9
arahy.Tifrunner.gnm1.ann1.UX21TB Arachis hypogaea HOM05D004703 ORTHO05D005801 3.7e-33 146.4 160 55.0
arahy.Tifrunner.gnm1.ann1.YD44XK Arachis hypogaea HOM05D004703 ORTHO05D005801 3.7e-33 146.4 160 55.0
arahy.Tifrunner.gnm1.ann1.L680XF Arachis hypogaea HOM05D004703 ORTHO05D005801 6.3e-33 145.6 107 72.9
Cfa024731 Carpinus fangiana HOM05D004703 ORTHO05D005801 5.3e-32 142.5 227 40.1
arahy.Tifrunner.gnm1.ann1.WGQ9HG Arachis hypogaea HOM05D004703 ORTHO05D005801 1.5e-31 141.0 122 63.9
arahy.Tifrunner.gnm1.ann1.QV6CQV Arachis hypogaea HOM05D004703 ORTHO05D005801 2.0e-31 140.6 121 63.6
ATR0251G001 Amborella trichopoda HOM05D004703 ORTHO05D005801 1.0e-30 138.3 88 70.5
vmacro19247 Vaccinium macrocarpon HOM05D004703 ORTHO05D005801 1.5e-26 124.4 75 74.7
arahy.Tifrunner.gnm1.ann1.DQS0N1 Arachis hypogaea HOM05D004703 ORTHO05D005801 6.3e-25 119.0 139 54.0
arahy.Tifrunner.gnm1.ann1.0PA3BU Arachis hypogaea HOM05D004703 ORTHO05D005801 9.1e-24 115.2 109 60.6
arahy.Tifrunner.gnm1.ann1.IA6KQS Arachis hypogaea HOM05D004703 ORTHO05D005801 4.2e-21 106.3 70 78.6
arahy.Tifrunner.gnm1.ann1.5L4UK7 Arachis hypogaea HOM05D004703 ORTHO05D005801 1.4e-19 101.3 194 38.1
CSS0004055 Camellia sinensis var. sinensis HOM05D004703 ORTHO05D005801 1.4e-16 91.3 57 77.2
arahy.Tifrunner.gnm1.ann1.N0B60F Arachis hypogaea HOM05D003718 ORTHO05D004402 9.1e-16 88.6 55 76.4
arahy.Tifrunner.gnm1.ann1.4J0L4L Arachis hypogaea HOM05D004703 ORTHO05D005801 7.7e-15 85.5 89 57.3
arahy.Tifrunner.gnm1.ann1.2KDH9Q Arachis hypogaea HOM05D004703 ORTHO05D005801 1.3e-14 84.7 94 53.2
arahy.Tifrunner.gnm1.ann1.RAR2PQ Arachis hypogaea HOM05D004703 ORTHO05D030873 3.1e-08 63.5 111 37.8
arahy.Tifrunner.gnm1.ann1.5AIV52 Arachis hypogaea HOM05D001155 ORTHO05D001080 8.5e-06 55.5 47 61.7


User provided reference genes

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