Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_5g00280 Fragaria vesca HOM05D005270 ORTHO05D006239 1.1e-218 763.1 390 100.0
FAN08G1405 Fragaria x ananassa HOM05D005270 ORTHO05D006239 1.5e-217 759.2 390 99.5
FAN18G1040 Fragaria x ananassa HOM05D005270 ORTHO05D006239 3.4e-217 758.1 390 99.5
FAN04G3018 Fragaria x ananassa HOM05D005270 ORTHO05D006239 8.4e-216 753.4 395 98.2
FAN13G2928 Fragaria x ananassa HOM05D005270 ORTHO05D006239 1.9e-215 752.3 390 98.5
RcHm_v2.0_Chr7g0202331 Rosa chinensis HOM05D005270 ORTHO05D006239 1.1e-207 726.5 393 95.7
Prupe.5G075500 Prunus persica HOM05D005270 ORTHO05D006239 1.8e-194 682.6 393 89.6
MD06G1067000 Malus domestica HOM05D005270 ORTHO05D006239 4.5e-193 677.9 393 88.3
Atru.chr9.1379_Atru.chr9.1380 Acer truncatum HOM05D005270 ORTHO05D006239 2.9e-184 648.7 394 84.8
CANSAT21G2027 Cannabis sativa HOM05D005270 ORTHO05D006239 9.7e-180 633.6 400 80.5
Ciclev10020501m.g Citrus clementina HOM05D005270 ORTHO05D006239 9.7e-180 633.6 396 82.3
Eucgr.D02030 Eucalyptus grandis HOM05D005270 ORTHO05D006239 4.8e-179 631.3 408 80.6
QL12p013868 Quercus lobata HOM05D005270 ORTHO05D006239 1.1e-178 630.2 396 82.3
Potri.001G120400 Populus trichocarpa HOM05D005270 ORTHO05D006239 3.5e-177 625.2 400 80.8
Manes.01G076600 Manihot esculenta HOM05D005270 ORTHO05D006239 2.9e-176 622.1 399 79.9
ClCG01G003850 Citrullus lanatus HOM05D005270 ORTHO05D006239 3.8e-176 621.7 402 80.6
Gohir.A03G010000 Gossypium hirsutum HOM05D005270 ORTHO05D006239 5.0e-176 621.3 398 80.4
Hma1.2p1_1414F.1_g281890 Hydrangea macrophylla HOM05D005270 ORTHO05D006239 5.0e-176 621.3 398 78.6
Gorai.006G212700 Gossypium raimondii HOM05D005270 ORTHO05D006239 1.5e-175 619.8 398 79.9
Sabra01G0092800 Salix brachista HOM05D005270 ORTHO05D006239 2.5e-175 619.0 400 80.5
Gohir.A09G195500 Gossypium hirsutum HOM05D005270 ORTHO05D006239 5.5e-175 617.8 398 79.4
Gohir.D09G190100 Gossypium hirsutum HOM05D005270 ORTHO05D006239 9.4e-175 617.1 398 79.6
Gohir.D03G160700 Gossypium hirsutum HOM05D005270 ORTHO05D006239 1.2e-174 616.7 398 79.9
CiPaw.11G150400 Carya illinoinensis HOM05D005270 ORTHO05D006239 3.6e-174 615.1 398 79.9
TWI81G0718 Tripterygium wilfordii HOM05D005270 ORTHO05D006239 6.1e-174 614.4 397 80.4
PGR031G3926 Punica granatum HOM05D005270 ORTHO05D006239 8.0e-174 614.0 402 78.6
Thecc.03G257000 Theobroma cacao HOM05D005270 ORTHO05D006239 1.8e-173 612.8 401 79.1
MELO3C005559.2 Cucumis melo HOM05D005270 ORTHO05D006239 3.0e-173 612.1 406 78.8
CSS0023019 Camellia sinensis var. sinensis HOM05D005270 ORTHO05D006239 5.2e-173 611.3 398 77.9
CSS0046114 Camellia sinensis var. sinensis HOM05D005270 ORTHO05D006239 5.2e-173 611.3 398 77.9
Duzib068G0557 Durio zibethinus HOM05D005270 ORTHO05D006239 5.2e-173 611.3 398 79.9
GSVIVG01004774001 Vitis vinifera HOM05D005270 ORTHO05D006239 1.5e-172 609.8 397 79.1
Sed0019529 Sechium edule HOM05D005270 ORTHO05D006239 4.4e-172 608.2 401 78.8
Lj2A211T58 Lonicera japonica HOM05D005270 ORTHO05D006239 1.7e-171 606.3 399 76.9
CsaV3_5G003980 Cucumis sativus L. HOM05D005270 ORTHO05D006239 2.2e-171 605.9 406 77.8
GSVIVG01001274001 Vitis vinifera HOM05D005270 ORTHO05D006239 4.8e-171 604.7 397 78.6
Dinv21601 Davidia involucrata HOM05D005270 ORTHO05D006239 6.3e-171 604.4 397 76.1
Actinidia27450 Actinidia chinensis HOM05D005270 ORTHO05D006239 8.3e-171 604.0 398 77.4
Lalb_Chr05g0225581 Lupinus albus HOM05D005270 ORTHO05D006239 1.2e-169 600.1 392 78.3
Sc01g0009340 Simmondsia chinensis HOM05D005270 ORTHO05D006239 1.6e-169 599.7 391 77.2
Peaxi162Scf00002g00815 Petunia axillaris HOM05D005270 ORTHO05D006239 2.7e-169 599.0 397 76.1
Solyc08g079070.2 Solanum lycopersicum HOM05D005270 ORTHO05D006239 2.7e-169 599.0 398 76.9
PGSC0003DMG400004791 Solanum tuberosum HOM05D005270 ORTHO05D006239 7.7e-169 597.4 398 76.6
Sopen08g027530 Solanum pennellii HOM05D005270 ORTHO05D006239 1.3e-168 596.7 398 76.6
Dinv39103 Davidia involucrata HOM05D000201 ORTHO05D001515 3.8e-168 595.1 386 78.8
Actinidia05188 Actinidia chinensis HOM05D005270 ORTHO05D006239 5.0e-168 594.7 397 76.1
Glyma.05G056400 Glycine max HOM05D005270 ORTHO05D006239 8.5e-168 594.0 399 75.9
CAN.G1217.18 Capsicum annuum HOM05D000486 ORTHO05D000375 1.1e-167 593.6 396 76.0
Rhsim07G0104300 Rhododendron simsii HOM05D005270 ORTHO05D006239 1.1e-167 593.6 397 75.6
arahy.Tifrunner.gnm1.ann1.9F7ELE Arachis hypogaea HOM05D005270 ORTHO05D006239 2.5e-167 592.4 398 76.6
TAR629G2769 Trochodendron aralioides HOM05D005270 ORTHO05D006239 1.6e-166 589.7 371 80.1
arahy.Tifrunner.gnm1.ann1.VW53Z5 Arachis hypogaea HOM05D005270 ORTHO05D006239 4.7e-166 588.2 398 76.1
Cc08_g12920 Coffea canephora HOM05D005270 ORTHO05D006239 1.0e-165 587.0 388 76.5
Glyma.17G138600 Glycine max HOM05D005270 ORTHO05D006239 5.2e-165 584.7 398 75.9
Lj4g0020394 Lotus japonicus HOM05D005270 ORTHO05D006239 1.2e-164 583.6 395 76.2
Oeu038010.1 Olea europaea HOM05D005270 ORTHO05D006239 1.5e-164 583.2 398 74.1
SGA_v2.0_scaffold144G35994 Striga asiatica HOM05D005270 ORTHO05D003965 2.6e-164 582.4 396 73.5
PSO017G6911 Papaver somniferum HOM05D005270 ORTHO05D006239 3.4e-164 582.0 393 75.8
THA.LOC104809459 Tarenaya hassleriana HOM05D005270 ORTHO05D006239 7.5e-164 580.9 405 73.6
Migut.E01048 Erythranthe guttata HOM05D005270 ORTHO05D006239 1.3e-163 580.1 395 73.9
MSTRG.25537 Avicennia marina HOM05D005270 ORTHO05D006239 1.7e-163 579.7 398 73.4
Psat4g070360 Pisum sativum HOM05D005270 ORTHO05D006239 3.7e-163 578.6 393 76.3
PSO170G6680 Papaver somniferum HOM05D005270 ORTHO05D006239 1.8e-162 576.2 401 74.8
CARHR012530 Cardamine hirsuta HOM05D005270 ORTHO05D006239 2.4e-162 575.9 407 73.2
Carub.0001s1190 Capsella rubella HOM05D005270 ORTHO05D006239 3.1e-162 575.5 407 73.0
MBI04_g37584_MAGBIO Magnolia biondii HOM05D005270 ORTHO05D006239 4.1e-162 575.1 397 74.6
Cpa.g.sc29.127 Carica papaya HOM05D005270 ORTHO05D006239 1.2e-161 573.5 506 63.8
Aa31LG1G2400 Aethionema arabicum HOM05D005270 ORTHO05D006239 1.6e-161 573.2 406 72.2
AL1G23510 Arabidopsis lyrata HOM05D005270 ORTHO05D006239 1.6e-161 573.2 407 72.5
Sp1g10840 Schrenkiella parvula HOM05D005270 ORTHO05D006239 1.6e-161 573.2 407 73.0
vmacro14106 Vaccinium macrocarpon HOM05D005270 ORTHO05D006239 1.6e-161 573.2 419 70.9
Aqoxy7G00723 Aquilegia oxysepala HOM05D005270 ORTHO05D006239 2.0e-161 572.8 396 74.2
Ca_25339_v3 Cicer arietinum L. HOM05D005270 ORTHO05D006239 2.7e-161 572.4 390 75.1
C05p11010 Brassica napus HOM05D005270 ORTHO05D006239 4.5e-161 571.6 408 73.0
Thhalv10007790m.g Eutrema salsugineum HOM05D005270 ORTHO05D006239 1.0e-160 570.5 408 72.3
A06p09330 Brassica napus HOM05D005270 ORTHO05D006239 1.3e-160 570.1 408 73.0
BolC5t29844H Brassica oleracea HOM05D005270 ORTHO05D006239 1.3e-160 570.1 408 72.8
BraA06t24120Z Brassica rapa HOM05D005270 ORTHO05D006239 6.6e-160 567.8 411 72.0
unitig_0.g1234 Utricularia gibba HOM05D005270 ORTHO05D006239 8.6e-160 567.4 399 71.9
Medtr4g101620 Medicago truncatula HOM05D005270 ORTHO05D006239 1.1e-159 567.0 402 73.1
SalBow1G0839 Salvia bowleyana HOM05D005270 ORTHO05D006239 1.1e-159 567.0 373 76.4
HPP92_022434 Vanilla planifolia HOM05D005270 ORTHO05D006239 2.8e-158 562.4 397 72.5
ATR1152G004 Amborella trichopoda HOM05D005270 ORTHO05D006239 4.7e-158 561.6 345 79.7
TPR.G37612 Trifolium pratense HOM05D005270 ORTHO05D006239 6.1e-158 561.2 352 80.7
AT1G12230 Arabidopsis thaliana HOM05D005270 ORTHO05D006239 1.4e-157 560.1 429 68.3
HanXRQChr03g0087851 Helianthus annuus HOM05D005270 ORTHO05D006239 6.8e-157 557.8 362 75.7
Lsat_1_v5_gn_6_90321 Lactuca sativa HOM05D005270 ORTHO05D006239 3.4e-156 555.4 400 70.8
Nitab4.5_0009175g0010 Nicotiana tabacum HOM05D005270 ORTHO05D006239 8.3e-155 550.8 408 71.3
CDE12G0422 Ceratophyllum demersum HOM05D005270 ORTHO05D006239 1.3e-152 543.5 391 71.9
ECA240G0014 Erigeron canadensis HOM05D000201 ORTHO05D006239 5.0e-152 541.6 401 69.1
Duzib205G1833 Durio zibethinus HOM05D005270 ORTHO05D006239 1.4e-149 533.5 402 71.1
Nitab4.5_0000993g0070 Nicotiana tabacum HOM05D005270 ORTHO05D006239 1.8e-149 533.1 398 70.6
AUR62007475 Chenopodium quinoa HOM05D005270 ORTHO05D006239 2.6e-148 529.3 392 72.4
EL10Ac5g13010 Beta vulgaris HOM05D005270 ORTHO05D006239 5.8e-148 528.1 402 69.9
DCAR_006814 Daucus carota HOM05D005270 ORTHO05D006239 5.4e-146 521.5 368 72.8
Phvul.003G218000 Phaseolus vulgaris HOM05D005270 ORTHO05D006239 1.2e-142 510.4 401 68.1
Zm00001eb172680 Zea mays HOM05D005270 ORTHO05D006239 3.6e-142 508.8 337 73.3
VMungo0251G3554 Vigna mungo HOM05D005270 ORTHO05D006239 4.7e-142 508.4 306 82.7
COL.COLO4_37215 Corchorus olitorius HOM05D005270 ORTHO05D006239 2.4e-138 496.1 284 86.3
AagrBONN_evm.TU.Sc2ySwM_369.586 Anthoceros agrestis HOM05D005270 ORTHO05D006239 2.3e-136 489.6 360 69.2
Pp3c15_6350 Physcomitrium patens HOM05D005270 ORTHO05D006239 3.3e-135 485.7 362 68.2
BcaC05g25195 Brassica carinata HOM05D005270 ORTHO05D006239 6.4e-131 471.5 368 67.4
SalBow1G5553 Salvia bowleyana HOM05D005270 ORTHO05D006239 2.1e-121 439.9 414 58.5
CBR_g37411 Chara braunii HOM05D005270 ORTHO05D006239 5.3e-109 398.7 339 58.1
Sed0011689 Sechium edule HOM05D005270 ORTHO05D006239 1.2e-81 307.8 245 70.2
Psat5g235160 Pisum sativum HOM05D005270 ORTHO05D006239 6.7e-80 302.0 262 63.4
Psat5g232960 Pisum sativum HOM05D005270 ORTHO05D006239 1.8e-77 293.9 262 61.5
Gorai.N027100 Gossypium raimondii HOM05D005270 ORTHO05D006239 3.9e-72 276.2 160 81.2
Mapoly0029s0033 Marchantia polymorpha HOM05D005270 ORTHO05D006239 1.5e-71 274.2 219 62.6
CDE04G1696 Ceratophyllum demersum HOM05D005270 ORTHO05D006239 2.8e-70 270.0 216 68.5
Os08g0154300 Oryza sativa ssp. japonica HOM05D005270 ORTHO05D006239 2.3e-64 250.4 229 60.3
Mapoly0029s0029 Marchantia polymorpha HOM05D005270 ORTHO05D006239 1.1e-63 248.1 203 59.1
Atru.chr9.1382 Acer truncatum HOM05D005270 ORTHO05D006239 1.2e-60 238.0 167 77.8
Haze_07851 Corylus avellana HOM05D005270 ORTHO05D006239 2.0e-60 237.3 260 53.5
DCAR_004923 Daucus carota HOM05D005270 ORTHO05D006239 6.3e-54 215.7 230 52.2
CDE04G2727 Ceratophyllum demersum HOM05D005270 ORTHO05D006239 1.0e-48 198.4 205 53.2
Atru.chr9.1383 Acer truncatum HOM05D005270 ORTHO05D006239 1.4e-45 188.0 110 82.7
AUR62039933 Chenopodium quinoa HOM05D005270 ORTHO05D006239 1.2e-44 184.9 110 79.1
Cre14.g630847 Chlamydomonas reinhardtii HOM05D005270 ORTHO05D006239 2.9e-43 180.3 373 37.8
FAN28G1011 Fragaria x ananassa HOM05D005270 ORTHO05D006239 8.6e-43 178.7 166 62.0
FAN11G3467 Fragaria x ananassa HOM05D005270 ORTHO05D006239 1.9e-42 177.6 166 61.4
SEGI_36758 Sequoiadendron giganteum HOM05D005270 ORTHO05D006239 4.3e-42 176.4 177 58.2
SEGI_05849 Sequoiadendron giganteum HOM05D005270 ORTHO05D006239 1.8e-40 171.0 100 82.0
SEGI_03700 Sequoiadendron giganteum HOM05D005270 ORTHO05D006239 1.2e-39 168.3 110 72.7
Cre01.g032650 Chlamydomonas reinhardtii HOM05D005270 ORTHO05D006239 1.8e-37 161.0 349 31.5
Gorai.003G169200 Gossypium raimondii HOM05D005270 ORTHO05D006239 1.8e-37 161.0 143 65.0
PRCOL_00004111 Prasinoderma coloniale HOM05D005270 ORTHO05D006239 8.6e-35 152.1 287 33.1
MCO13G140 Micromonas commoda HOM05D005270 ORTHO05D006239 1.2e-31 141.7 263 33.5
RcHm_v2.0_Chr6g0270571 Rosa chinensis HOM05D005270 ORTHO05D006239 5.4e-29 132.9 78 85.9
FAN04G2435 Fragaria x ananassa HOM05D005270 ORTHO05D006239 1.6e-25 121.3 60 98.3
RcHm_v2.0_Chr6g0254981 Rosa chinensis HOM05D005270 ORTHO05D006239 3.1e-24 117.1 66 87.9
PRCOL_00004269 Prasinoderma coloniale HOM05D005270 ORTHO05D006239 5.2e-24 116.3 256 30.9
FAN26G1714 Fragaria x ananassa HOM05D004635 ORTHO05D005899 1.4e-21 108.2 53 98.1
FAN14G3934 Fragaria x ananassa HOM05D000617 ORTHO05D000478 1.9e-21 107.8 55 94.5
FAN23G0587 Fragaria x ananassa HOM05D016072 ORTHO05D006239 4.1e-21 106.7 52 98.1
Ca_29061_v3 Cicer arietinum L. HOM05D001546 ORTHO05D002908 6.0e-20 102.8 209 29.7
FAN26G2512 Fragaria x ananassa HOM05D005270 ORTHO05D006239 6.0e-20 102.8 52 96.2
BcaC07g38600 Brassica carinata HOM05D000238 ORTHO05D037998 1.7e-19 101.3 80 68.8
FAN10G1808 Fragaria x ananassa HOM05D016072 ORTHO05D006239 2.5e-18 97.4 48 97.9
FAN23G1777 Fragaria x ananassa HOM05D016072 ORTHO05D006239 2.5e-18 97.4 48 97.9
CAN.G1488.1 Capsicum annuum HOM05D005270 ORTHO05D006239 7.3e-18 95.9 130 41.5
FAN26G1376 Fragaria x ananassa HOM05D005270 ORTHO05D006466 1.2e-17 95.1 51 98.0
GSVIVG01028518001 Vitis vinifera HOM05D005270 ORTHO05D006239 6.2e-17 92.8 49 85.7
MBI03_g13472_MAGBIO Magnolia biondii HOM05D005270 ORTHO05D006239 2.3e-16 90.9 69 63.8
MBI14_g06401_MAGBIO Magnolia biondii HOM05D005270 ORTHO05D006239 2.3e-16 90.9 53 83.0
CAN.G605.8 Capsicum annuum HOM05D005270 ORTHO05D006239 3.1e-16 90.5 51 78.4
MBI15_g47610_MAGBIO Magnolia biondii HOM05D001260 ORTHO05D004134 1.2e-15 88.6 50 86.0
BcaC07g41719 Brassica carinata HOM05D005270 ORTHO05D039702 1.5e-15 88.2 80 63.8
BolC8t52299H Brassica oleracea HOM05D005270 ORTHO05D039702 1.5e-15 88.2 80 63.8
FAN24G0448 Fragaria x ananassa HOM05D002561 ORTHO05D006466 2.6e-15 87.4 56 85.7
FAN24G1197 Fragaria x ananassa HOM05D002561 ORTHO05D006466 2.6e-15 87.4 56 85.7
FAN24G1576 Fragaria x ananassa HOM05D002561 ORTHO05D006466 2.6e-15 87.4 56 85.7
PRCOL_00005862 Prasinoderma coloniale HOM05D005270 ORTHO05D333221 5.8e-15 86.3 194 29.9
CSS0018551 Camellia sinensis var. sinensis HOM05D000691 ORTHO05D000378 3.8e-14 83.6 62 64.5
CAN.G1143.36 Capsicum annuum HOM05D001836 ORTHO05D001519 6.4e-14 82.8 85 54.1
SalBow1G3426 Salvia bowleyana HOM05D005270 ORTHO05D006239 1.2e-12 78.6 50 66.0
MBI18_g46779_MAGBIO Magnolia biondii HOM05D005270 ORTHO05D004199 5.1e-11 73.2 43 83.7
FvH4_4g08600 Fragaria vesca HOM05D000107 ORTHO05D006466 3.3e-10 70.5 101 47.5
MBI16_g06311_MAGBIO Magnolia biondii HOM05D001260 ORTHO05D004134 1.2e-09 68.6 40 82.5
C08p47590 Brassica napus HOM05D000101 ORTHO05D000089 3.8e-06 57.0 75 46.7


User provided reference genes

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