Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_5g00261 Fragaria vesca HOM05D006860 ORTHO05D009547 1.0e-151 540.0 277 100.0
FAN04G1232 Fragaria x ananassa HOM05D006860 ORTHO05D009547 5.9e-147 524.2 277 95.7
FAN08G1076 Fragaria x ananassa HOM05D006860 ORTHO05D009547 3.8e-146 521.5 278 96.0
FAN13G2943 Fragaria x ananassa HOM05D006860 ORTHO05D009547 1.6e-144 516.2 276 96.4
FAN18G3824 Fragaria x ananassa HOM05D006860 ORTHO05D009547 2.2e-133 479.2 277 92.4
RcHm_v2.0_Chr7g0202371 Rosa chinensis HOM05D006860 ORTHO05D009547 3.8e-130 468.4 282 86.2
Prupe.5G075300 Prunus persica HOM05D006860 ORTHO05D009547 1.7e-93 346.7 285 67.0
MD06G1063700 Malus domestica HOM05D006860 ORTHO05D009547 8.7e-90 334.3 299 64.5
Dinv39106 Davidia involucrata HOM05D006860 ORTHO05D009547 4.0e-87 325.5 268 63.1
QL12p013422 Quercus lobata HOM05D006860 ORTHO05D009547 7.6e-86 321.2 287 60.3
Rhsim07G0104800 Rhododendron simsii HOM05D006860 ORTHO05D009547 2.5e-81 306.2 267 61.8
CANSAT21G2349 Cannabis sativa HOM05D006860 ORTHO05D009547 3.6e-80 302.4 287 56.8
Solyc08g079050.2 Solanum lycopersicum HOM05D006860 ORTHO05D009547 4.8e-80 302.0 268 58.6
Sopen08g027510 Solanum pennellii HOM05D006860 ORTHO05D009547 2.4e-79 299.7 268 58.2
PGSC0003DMG400004793 Solanum tuberosum HOM05D006860 ORTHO05D009547 4.0e-79 298.9 268 58.2
Haze_07857 Corylus avellana HOM05D006860 ORTHO05D009547 1.2e-78 297.4 271 57.2
Duzib084G1019 Durio zibethinus HOM05D006860 ORTHO05D009547 5.8e-78 295.0 270 57.8
CAN.G1217.16 Capsicum annuum HOM05D006860 ORTHO05D009547 5.5e-76 288.5 256 56.6
Nn6g34033 Nelumbo nucifera HOM05D006860 ORTHO05D009547 9.3e-76 287.7 269 55.0
Manes.01G076800 Manihot esculenta HOM05D006860 ORTHO05D009547 1.0e-74 284.3 280 55.0
TWI15G0511 Tripterygium wilfordii HOM05D006860 ORTHO05D009547 2.5e-73 279.6 292 54.5
Nitab4.5_0012289g0010 Nicotiana tabacum HOM05D006860 ORTHO05D009547 1.6e-72 276.9 229 61.6
SGA_v2.0_scaffold120G32852 Striga asiatica HOM05D006860 ORTHO05D009547 4.8e-72 275.4 261 56.3
Migut.A00808 Erythranthe guttata HOM05D006860 ORTHO05D009547 8.1e-72 274.6 267 58.4
CiPaw.11G150700 Carya illinoinensis HOM05D006860 ORTHO05D009547 3.1e-71 272.7 226 61.5
Thecc.03G256700 Theobroma cacao HOM05D006860 ORTHO05D009547 2.0e-70 270.0 274 52.9
Gohir.A03G009800 Gossypium hirsutum HOM05D006860 ORTHO05D009547 2.6e-70 269.6 258 55.8
Nitab4.5_0000993g0040 Nicotiana tabacum HOM05D006860 ORTHO05D009547 7.6e-70 268.1 209 64.1
Gohir.D03G160900 Gossypium hirsutum HOM05D006860 ORTHO05D009547 1.0e-69 267.7 258 55.4
Gorai.003G169400 Gossypium raimondii HOM05D006860 ORTHO05D009547 1.0e-69 267.7 258 55.4
vmacro14104 Vaccinium macrocarpon HOM05D006860 ORTHO05D009547 1.7e-69 266.9 227 62.6
Potri.001G120700 Populus trichocarpa HOM05D006860 ORTHO05D009547 8.4e-69 264.6 263 54.4
Cc08_g12900 Coffea canephora HOM05D006860 ORTHO05D009547 1.1e-68 264.2 273 51.6
Oeu026500.1 Olea europaea HOM05D006860 ORTHO05D009547 2.5e-68 263.1 256 54.7
Aqoxy7G00725 Aquilegia oxysepala HOM05D006860 ORTHO05D009547 4.2e-68 262.3 271 53.1
DCAR_004924 Daucus carota HOM05D006860 ORTHO05D009547 4.2e-68 262.3 249 53.8
Lalb_Chr23g0276231 Lupinus albus HOM05D006860 ORTHO05D009547 2.1e-67 260.0 304 48.0
Glyma.15G182700 Glycine max HOM05D006860 ORTHO05D009547 3.5e-67 259.2 294 50.0
Sabra01G0093000 Salix brachista HOM05D006860 ORTHO05D009547 1.0e-66 257.7 263 53.6
Atru.chr9.1377 Acer truncatum HOM05D006860 ORTHO05D009547 3.0e-66 256.1 255 56.5
Peaxi162Scf00002g00093 Petunia axillaris HOM05D006860 ORTHO05D009547 8.7e-66 254.6 217 58.1
TAR375G0404 Trochodendron aralioides HOM05D006860 ORTHO05D009547 3.3e-65 252.7 224 58.9
Psat1g138880 Pisum sativum HOM05D006860 ORTHO05D009547 1.3e-64 250.8 266 49.2
EL10Ac5g13012 Beta vulgaris HOM05D006860 ORTHO05D009547 2.1e-64 250.0 261 51.7
PSO017G2204 Papaver somniferum HOM05D006860 ORTHO05D009547 2.8e-64 249.6 257 51.4
VMungo1309G2714 Vigna mungo HOM05D006860 ORTHO05D009547 8.2e-64 248.1 262 52.3
Ca_02280_v3 Cicer arietinum L. HOM05D006860 ORTHO05D009547 1.8e-63 246.9 253 49.4
Phvul.009G223700 Phaseolus vulgaris HOM05D006860 ORTHO05D009547 1.5e-62 243.8 266 51.5
Nn4g23121 Nelumbo nucifera HOM05D006860 ORTHO05D009547 3.4e-62 242.7 210 56.7
arahy.Tifrunner.gnm1.ann1.26U38F Arachis hypogaea HOM05D006860 ORTHO05D009547 4.5e-62 242.3 280 51.8
arahy.Tifrunner.gnm1.ann1.NHN2FI Arachis hypogaea HOM05D006860 ORTHO05D009547 4.5e-62 242.3 280 51.8
PSO170G3955 Papaver somniferum HOM05D006860 ORTHO05D009547 5.9e-62 241.9 257 51.4
Eucgr.D02032 Eucalyptus grandis HOM05D006860 ORTHO05D009547 3.8e-61 239.2 259 50.6
Medtr2g044090 Medicago truncatula HOM05D006860 ORTHO05D009547 1.9e-60 236.9 250 49.2
C01p16890 Brassica napus HOM05D006860 ORTHO05D009547 4.2e-60 235.7 267 48.7
BraA01t01334Z Brassica rapa HOM05D006860 ORTHO05D009547 9.3e-60 234.6 267 48.7
Thhalv10026873m.g Eutrema salsugineum HOM05D006860 ORTHO05D009547 9.3e-60 234.6 262 50.8
A01p13880 Brassica napus HOM05D006860 ORTHO05D009547 4.6e-59 232.3 267 47.9
BolC1t01631H Brassica oleracea HOM05D006860 ORTHO05D009547 7.9e-59 231.5 267 48.3
Sp7g20650 Schrenkiella parvula HOM05D006860 ORTHO05D009547 1.0e-58 231.1 265 49.4
AL7G30980 Arabidopsis lyrata HOM05D006860 ORTHO05D009547 1.3e-58 230.7 267 49.4
Carub.0007s1871 Capsella rubella HOM05D006860 ORTHO05D009547 2.3e-58 229.9 267 48.7
Lj6g0006421 Lotus japonicus HOM05D006860 ORTHO05D009547 2.3e-58 229.9 287 48.1
Aa31LG6G4580 Aethionema arabicum HOM05D006860 ORTHO05D009547 3.9e-58 229.2 274 46.7
BcaC09g51131 Brassica carinata HOM05D006860 ORTHO05D009547 5.1e-58 228.8 267 47.9
ECA233G1099 Erigeron canadensis HOM05D006860 ORTHO05D009547 7.4e-57 224.9 282 46.5
Ciclev10024312m.g Citrus clementina HOM05D006860 ORTHO05D009547 1.3e-56 224.2 260 47.7
THA.LOC104813362 Tarenaya hassleriana HOM05D006860 ORTHO05D009547 1.6e-56 223.8 268 46.3
AT4G22600 Arabidopsis thaliana HOM05D006860 ORTHO05D009547 2.8e-56 223.0 267 46.8
CARHR229490 Cardamine hirsuta HOM05D006860 ORTHO05D009547 3.7e-56 222.6 260 47.7
Actinidia27452 Actinidia chinensis HOM05D006860 ORTHO05D009547 1.8e-55 220.3 212 53.8
Cpa.g.sc29.129 Carica papaya HOM05D006860 ORTHO05D009547 1.8e-55 220.3 258 50.8
PGR031G3062 Punica granatum HOM05D006860 ORTHO05D009547 2.0e-54 216.9 258 48.8
unitig_27.g24920 Utricularia gibba HOM05D006860 ORTHO05D009547 7.2e-52 208.4 257 45.9
TPR.G24674 Trifolium pratense HOM05D006860 ORTHO05D009547 7.9e-51 204.9 240 46.7
HanXRQChr13g0394991 Helianthus annuus HOM05D006860 ORTHO05D009547 2.3e-50 203.4 269 45.4
Ah.12g056480 Amaranthus hybridus HOM05D006860 ORTHO05D009547 2.8e-48 196.4 236 46.6
HPP92_025603 Vanilla planifolia HOM05D006860 ORTHO05D009547 2.9e-45 186.4 272 40.8
HPP92_025643 Vanilla planifolia HOM05D006860 ORTHO05D009547 2.2e-40 170.2 259 41.3
Sc07g0009390 Simmondsia chinensis HOM05D000685 ORTHO05D000511 3.1e-39 166.4 241 49.8
Zm00001eb249700 Zea mays HOM05D006860 ORTHO05D009547 1.2e-35 154.5 249 38.2
Os02g0661300 Oryza sativa ssp. japonica HOM05D006860 ORTHO05D009547 3.3e-33 146.4 251 36.7
COL.COLO4_37211 Corchorus olitorius HOM05D006860 ORTHO05D009547 1.4e-31 141.0 119 59.7
EL10Ac9g21191 Beta vulgaris HOM05D006860 ORTHO05D009547 1.8e-26 124.0 130 48.5
Ciclev10023898m.g Citrus clementina HOM05D006860 ORTHO05D009547 2.0e-25 120.6 121 53.7
Sp7g20630 Schrenkiella parvula HOM05D006860 ORTHO05D015488 3.1e-23 113.2 242 33.9
BcaB03g15470 Brassica carinata HOM05D006860 ORTHO05D009547 1.5e-20 104.4 250 30.8
BcaB03g15468 Brassica carinata HOM05D000561 ORTHO05D009547 2.5e-20 103.6 256 32.0
Carub.0008s2329 Capsella rubella HOM05D006860 ORTHO05D009547 5.5e-20 102.4 252 28.2
A03p53590 Brassica napus HOM05D006860 ORTHO05D015488 9.5e-20 101.7 248 32.3
BcaNung01686 Brassica carinata HOM05D006860 ORTHO05D009547 2.8e-19 100.1 261 31.0
C07p51920 Brassica napus HOM05D006860 ORTHO05D015488 3.6e-19 99.8 245 32.7
BolC7t45692H Brassica oleracea HOM05D006860 ORTHO05D015488 3.6e-19 99.8 245 32.7
AUR62007478 Chenopodium quinoa HOM05D006860 ORTHO05D009547 8.0e-19 98.6 114 49.1
C07p51900 Brassica napus HOM05D006860 ORTHO05D015488 1.4e-18 97.8 242 30.2
BcaNung02492 Brassica carinata HOM05D006860 ORTHO05D015488 1.8e-18 97.4 242 29.8
BraA03t14425Z Brassica rapa HOM05D006860 ORTHO05D015488 2.3e-18 97.1 247 30.0
BraA03t14422Z Brassica rapa HOM05D006860 ORTHO05D015488 3.0e-18 96.7 242 29.8
BolC7t45689H Brassica oleracea HOM05D006860 ORTHO05D015488 5.2e-18 95.9 242 29.8
BcaNung02490 Brassica carinata HOM05D006860 ORTHO05D015488 6.8e-18 95.5 244 31.6
BcaNung01685 Brassica carinata HOM05D006860 ORTHO05D009547 1.2e-17 94.7 262 29.4
A03p53560 Brassica napus HOM05D006860 ORTHO05D015488 1.5e-17 94.4 242 29.8
C07p51910 Brassica napus HOM05D006860 ORTHO05D028065 1.5e-17 94.4 246 30.1
BraA03t14423Z Brassica rapa HOM05D006860 ORTHO05D028065 4.4e-17 92.8 246 28.9
BcaNung01688 Brassica carinata HOM05D006860 ORTHO05D015488 1.7e-16 90.9 238 29.0
A03p53570 Brassica napus HOM05D006860 ORTHO05D028065 8.3e-16 88.6 246 29.3
BolC7t45690H Brassica oleracea HOM05D006860 ORTHO05D028065 4.1e-15 86.3 249 29.3
Ciclev10010734m.g Citrus clementina HOM05D006860 ORTHO05D009547 2.0e-14 84.0 111 45.9
EL10Ac8g19726 Beta vulgaris HOM05D006860 ORTHO05D009547 3.5e-14 83.2 50 68.0
Ca_19832_v3 Cicer arietinum L. HOM05D000030 ORTHO05D000009 1.1e-12 78.2 83 51.8
SGA_v2.0_scaffold16G07543 Striga asiatica HOM05D006860 ORTHO05D009547 1.1e-12 78.2 62 59.7
Ca_27374_v3 Cicer arietinum L. HOM05D006860 ORTHO05D009547 2.5e-12 77.0 69 56.5
Ciclev10018172m.g Citrus clementina HOM05D006860 ORTHO05D009547 2.5e-12 77.0 68 52.9
TPR.G18947 Trifolium pratense HOM05D006860 ORTHO05D009547 6.1e-11 72.4 68 55.9
SGA_v2.0_scaffold15G07181 Striga asiatica HOM05D011902 ORTHO05D009547 1.4e-10 71.2 58 56.9
SMO271G0144 Selaginella moellendorffii HOM05D000828 ORTHO05D000623 5.7e-09 65.9 239 25.1
SGA_v2.0_scaffold191G40457 Striga asiatica HOM05D000592 ORTHO05D001485 1.3e-08 64.7 60 56.7
AagrBONN_evm.TU.Sc2ySwM_117.3641 Anthoceros agrestis HOM05D000382 ORTHO05D000623 1.1e-07 61.6 236 22.5
Zm00001eb319230 Zea mays HOM05D006860 ORTHO05D009547 9.2e-07 58.5 60 46.7


User provided reference genes

Program Settings