Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_4g23360 Fragaria vesca HOM05D007269 ORTHO05D008531 2.5e-120 435.6 250 100.0
FAN12G4201 Fragaria x ananassa HOM05D007269 ORTHO05D008531 3.9e-113 411.8 239 99.6
FAN17G1902 Fragaria x ananassa HOM05D007269 ORTHO05D008531 1.3e-97 360.1 237 86.9
RcHm_v2.0_Chr4g0429751 Rosa chinensis HOM05D007269 ORTHO05D008531 3.3e-88 328.9 246 81.7
MD16G1123500 Malus domestica HOM05D007269 ORTHO05D008531 2.9e-44 183.0 252 59.1
Prupe.1G222200 Prunus persica HOM05D007269 ORTHO05D008531 1.0e-41 174.5 250 57.6
QL03p051584 Quercus lobata HOM05D007269 ORTHO05D008531 2.4e-38 163.3 246 48.8
Thecc.02G201200 Theobroma cacao HOM05D007269 ORTHO05D008531 9.1e-38 161.4 246 41.9
CiPaw.05G106700 Carya illinoinensis HOM05D007269 ORTHO05D008531 4.4e-32 142.5 251 47.4
Aqoxy3G01626 Aquilegia oxysepala HOM05D007269 ORTHO05D008531 1.7e-31 140.6 252 42.9
Potri.001G059800 Populus trichocarpa HOM05D007269 ORTHO05D008531 3.7e-31 139.4 247 40.1
CiPaw.06G105600 Carya illinoinensis HOM05D007269 ORTHO05D008531 1.7e-28 130.6 268 36.9
CSS0016059 Camellia sinensis var. sinensis HOM05D007269 ORTHO05D008531 1.5e-27 127.5 246 37.4
PGR119G1209 Punica granatum HOM05D007269 ORTHO05D008531 1.9e-27 127.1 254 35.4
Manes.13G008500 Manihot esculenta HOM05D007269 ORTHO05D008531 7.2e-27 125.2 251 39.4
Aqoxy5G03286 Aquilegia oxysepala HOM05D007269 ORTHO05D008531 4.4e-24 115.9 242 33.9
Nn4g22252 Nelumbo nucifera HOM05D007269 ORTHO05D008531 6.3e-23 112.1 246 34.6
CANSAT01G1989 Cannabis sativa HOM05D007269 ORTHO05D008531 1.8e-22 110.5 276 33.0
Manes.12G008000 Manihot esculenta HOM05D007269 ORTHO05D008531 2.4e-22 110.2 239 39.7
Ciclev10032794m.g Citrus clementina HOM05D007269 ORTHO05D008531 2.7e-21 106.7 242 34.7
TAR374G0918 Trochodendron aralioides HOM05D007269 ORTHO05D008531 4.5e-21 105.9 115 50.4
Sabra03G0123300 Salix brachista HOM05D007269 ORTHO05D008531 2.9e-20 103.2 240 32.9
Cfa009391 Carpinus fangiana HOM05D007269 ORTHO05D008531 1.5e-19 100.9 196 46.9
MSTRG.7284 Avicennia marina HOM05D007269 ORTHO05D008531 1.9e-19 100.5 240 32.9
Thecc.03G133000 Theobroma cacao HOM05D007269 ORTHO05D008531 5.5e-19 99.0 255 34.1
Potri.012G101800 Populus trichocarpa HOM05D007269 ORTHO05D008531 1.6e-18 97.4 243 32.5
Gorai.002G023300 Gossypium raimondii HOM05D007269 ORTHO05D008531 2.1e-18 97.1 267 40.1
Gohir.A01G022800 Gossypium hirsutum HOM05D007269 ORTHO05D008531 2.7e-18 96.7 263 42.2
Nn3g16393 Nelumbo nucifera HOM05D007269 ORTHO05D008531 2.7e-18 96.7 246 38.6
CSS0011599 Camellia sinensis var. sinensis HOM05D007269 ORTHO05D008531 3.6e-18 96.3 245 38.4
Migut.M01219 Erythranthe guttata HOM05D007269 ORTHO05D008531 3.6e-18 96.3 248 35.1
Gohir.D01G020800 Gossypium hirsutum HOM05D007269 ORTHO05D008531 3.6e-18 96.3 270 33.7
QL10p002347 Quercus lobata HOM05D007269 ORTHO05D008531 3.6e-18 96.3 248 33.5
COL.COLO4_36213 Corchorus olitorius HOM05D007269 ORTHO05D008531 4.0e-17 92.8 257 33.1
PSO017G6998 Papaver somniferum HOM05D007269 ORTHO05D008531 5.2e-17 92.4 258 29.5
Potri.015G099800 Populus trichocarpa HOM05D007269 ORTHO05D008531 6.8e-17 92.0 246 32.5
MBI07_g46909_MAGBIO Magnolia biondii HOM05D007269 ORTHO05D008531 8.8e-17 91.7 252 41.3
Potri.003G168200 Populus trichocarpa HOM05D007269 ORTHO05D008531 2.6e-16 90.1 138 43.5
Duzib068G0517 Durio zibethinus HOM05D007269 ORTHO05D008531 4.4e-16 89.4 252 31.0
Duzib084G1105 Durio zibethinus HOM05D007269 ORTHO05D008531 4.4e-16 89.4 248 34.3
TAR622G0366 Trochodendron aralioides HOM05D007269 ORTHO05D008531 4.4e-16 89.4 201 42.3
Manes.14G048800 Manihot esculenta HOM05D007269 ORTHO05D008531 7.5e-16 88.6 249 30.5
ATR0582G094 Amborella trichopoda HOM05D007269 ORTHO05D008531 2.2e-15 87.0 248 31.0
CDE05G2305 Ceratophyllum demersum HOM05D007269 ORTHO05D008531 1.1e-14 84.7 236 37.3
TWI18G0336 Tripterygium wilfordii HOM05D000350 ORTHO05D000228 1.4e-14 84.3 163 36.8
Ciclev10032833m.g Citrus clementina HOM05D007269 ORTHO05D008531 4.1e-14 82.8 241 32.4
CiPaw.11G004900 Carya illinoinensis HOM05D007269 ORTHO05D008531 9.1e-14 81.6 249 32.1
HanXRQChr09g0273431 Helianthus annuus HOM05D007269 ORTHO05D008531 9.1e-14 81.6 253 28.5
Sabra15G0120500 Salix brachista HOM05D007269 ORTHO05D008531 1.2e-13 81.3 242 28.1
Migut.K01007 Erythranthe guttata HOM05D007269 ORTHO05D008531 1.6e-13 80.9 248 31.5
Lsat_1_v5_gn_4_82360 Lactuca sativa HOM05D007269 ORTHO05D008531 2.0e-13 80.5 244 29.9
Sabra12G0074700 Salix brachista HOM05D001095 ORTHO05D000976 2.0e-13 80.5 243 29.6
Cc11_g17250 Coffea canephora HOM05D007269 ORTHO05D008531 5.9e-13 79.0 263 31.2
HanXRQChr05g0153821 Helianthus annuus HOM05D007269 ORTHO05D008531 1.0e-12 78.2 253 32.4
Nitab4.5_0002530g0020 Nicotiana tabacum HOM05D007269 ORTHO05D008531 1.0e-12 78.2 256 30.5
Lalb_Chr07g0183561 Lupinus albus HOM05D007269 ORTHO05D008531 1.3e-12 77.8 245 28.6
Atru.chr6.1845 Acer truncatum HOM05D007269 ORTHO05D008531 1.7e-12 77.4 238 31.1
Oeu001326.1 Olea europaea HOM05D007269 ORTHO05D008531 1.5e-11 74.3 236 30.9
Oeu001327.1 Olea europaea HOM05D007269 ORTHO05D008531 1.5e-11 74.3 236 30.9
Nitab4.5_0000021g1020 Nicotiana tabacum HOM05D007269 ORTHO05D008531 2.5e-11 73.6 247 28.3
HanXRQChr08g0236471 Helianthus annuus HOM05D007269 ORTHO05D008531 3.2e-11 73.2 251 27.5
CsaV3_6G008060 Cucumis sativus L. HOM05D026927 ORTHO05D008531 5.5e-11 72.4 246 30.1
Oeu001328.1 Olea europaea HOM05D007269 ORTHO05D008531 1.6e-10 70.9 273 28.2
PSO017G1627 Papaver somniferum HOM05D007269 ORTHO05D008531 1.6e-10 70.9 203 28.6
Lj4g0016206 Lotus japonicus HOM05D007269 ORTHO05D008531 2.1e-10 70.5 254 27.2
RcHm_v2.0_Chr7g0189701 Rosa chinensis HOM05D007269 ORTHO05D008531 2.1e-10 70.5 255 28.2
ECA232G3539 Erigeron canadensis HOM05D007269 ORTHO05D008531 4.7e-10 69.3 148 33.1
Gohir.D12G192900 Gossypium hirsutum HOM05D007269 ORTHO05D008531 4.7e-10 69.3 248 30.2
FAN08G0669 Fragaria x ananassa HOM05D007269 ORTHO05D008531 6.1e-10 68.9 255 30.6
Sabra01G0042900 Salix brachista HOM05D007269 ORTHO05D008531 6.1e-10 68.9 88 48.9
Lalb_Chr13g0297191 Lupinus albus HOM05D007269 ORTHO05D008531 8.0e-10 68.6 259 28.2
Gorai.008G207700 Gossypium raimondii HOM05D007269 ORTHO05D008531 1.4e-09 67.8 248 30.2
Phvul.002G285300 Phaseolus vulgaris HOM05D007269 ORTHO05D008531 1.4e-09 67.8 249 27.3
FAN13G1779 Fragaria x ananassa HOM05D007269 ORTHO05D008531 4.0e-09 66.2 253 29.6
Prupe.5G148200 Prunus persica HOM05D007269 ORTHO05D008531 4.0e-09 66.2 159 34.0
FAN28G2669 Fragaria x ananassa HOM05D007269 ORTHO05D008531 6.8e-09 65.5 248 29.4
FvH4_5g08680 Fragaria vesca HOM05D007269 ORTHO05D008531 8.8e-09 65.1 248 29.8
FAN18G2199 Fragaria x ananassa HOM05D007269 ORTHO05D008531 8.8e-09 65.1 248 29.8
Sc22g0003750 Simmondsia chinensis HOM05D007269 ORTHO05D008531 1.2e-08 64.7 90 37.8
Gohir.A12G190800 Gossypium hirsutum HOM05D007269 ORTHO05D008531 1.5e-08 64.3 248 29.4
Cfa018768 Carpinus fangiana HOM05D007269 ORTHO05D008531 2.6e-08 63.5 246 26.4
Psat7g036960 Pisum sativum HOM05D007269 ORTHO05D008531 3.4e-08 63.2 261 28.4
FAN06G3947 Fragaria x ananassa HOM05D007269 ORTHO05D008531 4.4e-08 62.8 246 29.3
CAN.G732.21 Capsicum annuum HOM05D007269 ORTHO05D008531 1.3e-07 61.2 243 26.7
MD06G1137900 Malus domestica HOM05D007269 ORTHO05D008531 1.3e-07 61.2 251 28.7
MELO3C022330.2 Cucumis melo HOM05D026927 ORTHO05D008531 2.8e-07 60.1 244 27.5
Os12g0460100 Oryza sativa ssp. japonica HOM05D007269 ORTHO05D008531 3.7e-07 59.7 249 26.1
Oeu012652.1 Olea europaea HOM05D007269 ORTHO05D008531 4.9e-07 59.3 132 34.8
MD14G1153300 Malus domestica HOM05D007269 ORTHO05D008531 6.3e-07 58.9 141 31.2
Zm00001eb142990 Zea mays HOM05D007269 ORTHO05D008531 6.3e-07 58.9 131 32.8
Cpa.g.sc4.165 Carica papaya HOM05D007269 ORTHO05D008531 1.1e-06 58.2 250 26.8
TPR.G28777 Trifolium pratense HOM05D007269 ORTHO05D008531 1.1e-06 58.2 251 27.5
Os01g0924200 Oryza sativa ssp. japonica HOM05D007269 ORTHO05D008531 5.4e-06 55.8 137 30.7
Zm00001eb364140 Zea mays HOM05D007269 ORTHO05D008531 5.4e-06 55.8 122 32.8
Atru.chr11.2371 Acer truncatum HOM05D007269 ORTHO05D051934 7.0e-06 55.5 26 92.3
Rhsim12G0023500 Rhododendron simsii HOM05D007269 ORTHO05D008531 7.0e-06 55.5 194 29.4
DCAR_021637 Daucus carota HOM05D007269 ORTHO05D008531 9.2e-06 55.1 235 26.4


User provided reference genes

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