Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_4g23070 Fragaria vesca HOM05D003968 ORTHO05D004077 1.3e-88 330.1 218 100.0
FAN12G2512 Fragaria x ananassa HOM05D003968 ORTHO05D004077 3.1e-82 308.9 220 90.9
FAN17G1317 Fragaria x ananassa HOM05D003968 ORTHO05D004077 4.1e-79 298.5 248 82.3
RcHm_v2.0_Chr4g0429341 Rosa chinensis HOM05D003968 ORTHO05D004077 3.4e-73 278.9 218 85.3
FAN07G1723 Fragaria x ananassa HOM05D003968 ORTHO05D004077 1.0e-61 240.7 237 75.9
Manes.09G185900 Manihot esculenta HOM05D003968 ORTHO05D004077 2.4e-50 203.0 223 59.2
QL03p050330 Quercus lobata HOM05D003968 ORTHO05D004077 5.3e-50 201.8 219 53.0
Cfa009411 Carpinus fangiana HOM05D003968 ORTHO05D004077 3.4e-49 199.1 221 56.1
Haze_12469 Corylus avellana HOM05D003968 ORTHO05D004077 1.7e-48 196.8 221 54.3
Manes.08G103100 Manihot esculenta HOM05D003968 ORTHO05D004077 2.9e-48 196.1 219 58.0
Duzib251G0690 Durio zibethinus HOM05D003968 ORTHO05D004077 1.4e-47 193.7 223 68.2
MD13G1126400 Malus domestica HOM05D003968 ORTHO05D004077 1.4e-47 193.7 228 65.4
MD16G1126900 Malus domestica HOM05D003968 ORTHO05D004077 3.5e-46 189.1 218 64.2
CiPaw.05G103900 Carya illinoinensis HOM05D003968 ORTHO05D004077 6.0e-46 188.3 220 54.5
Gohir.A12G140400 Gossypium hirsutum HOM05D003968 ORTHO05D004077 3.9e-45 185.7 226 68.1
Gohir.D12G145000 Gossypium hirsutum HOM05D003968 ORTHO05D004077 3.9e-45 185.7 223 65.5
PGR057G0001 Punica granatum HOM05D003968 ORTHO05D004077 3.9e-45 185.7 216 63.4
PGR119G2322 Punica granatum HOM05D003968 ORTHO05D004077 3.9e-45 185.7 216 63.4
Gorai.008G156400 Gossypium raimondii HOM05D003968 ORTHO05D004077 5.1e-45 185.3 225 64.9
Dinv17895 Davidia involucrata HOM05D003968 ORTHO05D004077 8.7e-45 184.5 218 67.0
Potri.003G165800 Populus trichocarpa HOM05D003968 ORTHO05D004077 1.1e-44 184.1 218 54.1
Duzib248G0844 Durio zibethinus HOM05D003968 ORTHO05D004077 1.5e-44 183.7 218 60.1
CiPaw.06G107600 Carya illinoinensis HOM05D003968 ORTHO05D004077 1.9e-44 183.3 215 54.4
Duzib052G1223 Durio zibethinus HOM05D003968 ORTHO05D004077 1.9e-44 183.3 225 64.0
Ciclev10032280m.g Citrus clementina HOM05D003968 ORTHO05D004077 2.5e-44 183.0 223 65.9
Prupe.1G219000 Prunus persica HOM05D003968 ORTHO05D004077 4.3e-44 182.2 227 56.8
Potri.001G062000 Populus trichocarpa HOM05D003968 ORTHO05D004077 7.4e-44 181.4 218 56.0
Hma1.2p1_0459F.1_g157230 Hydrangea macrophylla HOM05D003968 ORTHO05D004077 1.3e-43 180.6 221 68.3
Thecc.02G196200 Theobroma cacao HOM05D003968 ORTHO05D004077 1.3e-43 180.6 220 65.0
Sabra03G0121000 Salix brachista HOM05D003968 ORTHO05D004077 2.8e-43 179.5 218 50.9
Sabra01G0044600 Salix brachista HOM05D003968 ORTHO05D004077 3.7e-43 179.1 218 55.5
Nitab4.5_0007554g0020 Nicotiana tabacum HOM05D003968 ORTHO05D004077 1.8e-42 176.8 220 49.1
CSS0002178 Camellia sinensis var. sinensis HOM05D003968 ORTHO05D004077 2.4e-42 176.4 218 57.3
Oeu003280.1 Olea europaea HOM05D003968 ORTHO05D004077 1.2e-41 174.1 218 45.0
TAR629G0662 Trochodendron aralioides HOM05D003968 ORTHO05D004077 1.2e-41 174.1 218 50.0
Peaxi162Scf00758g00054 Petunia axillaris HOM05D003968 ORTHO05D004077 3.4e-41 172.6 220 65.9
TWI36G1280 Tripterygium wilfordii HOM05D003968 ORTHO05D004077 4.5e-41 172.2 223 51.1
VMungo1383G2332 Vigna mungo HOM05D003968 ORTHO05D004077 4.5e-41 172.2 216 46.8
GSVIVG01000957001 Vitis vinifera HOM05D003968 ORTHO05D004077 7.6e-41 171.4 208 58.7
Eucgr.H03380 Eucalyptus grandis HOM05D003968 ORTHO05D004077 1.0e-40 171.0 231 52.4
TWI75G0242 Tripterygium wilfordii HOM05D003968 ORTHO05D004077 1.3e-40 170.6 218 52.3
Glyma.18G302000 Glycine max HOM05D003968 ORTHO05D004077 2.9e-40 169.5 216 59.7
arahy.Tifrunner.gnm1.ann1.GKU1A2 Arachis hypogaea HOM05D003968 ORTHO05D004077 6.5e-40 168.3 232 57.3
Actinidia30604 Actinidia chinensis HOM05D003968 ORTHO05D004077 8.5e-40 167.9 218 50.9
arahy.Tifrunner.gnm1.ann1.25I2B1 Arachis hypogaea HOM05D003968 ORTHO05D004077 8.5e-40 167.9 225 57.8
vmacro22632 Vaccinium macrocarpon HOM05D003968 ORTHO05D004077 1.1e-39 167.5 214 64.5
Phvul.008G000400 Phaseolus vulgaris HOM05D003968 ORTHO05D004077 1.4e-39 167.2 217 46.1
Lj1g0012774 Lotus japonicus HOM05D003968 ORTHO05D004077 1.9e-39 166.8 214 51.9
Sc11g0000210 Simmondsia chinensis HOM05D003968 ORTHO05D004077 2.5e-39 166.4 238 52.1
Sed0024018 Sechium edule HOM05D003968 ORTHO05D004077 4.2e-39 165.6 224 64.7
ECA233G5077 Erigeron canadensis HOM05D003968 ORTHO05D004077 5.5e-39 165.2 218 65.1
Atru.chr11.2403 Acer truncatum HOM05D003968 ORTHO05D004077 7.2e-39 164.9 217 65.0
CANSAT56G0023 Cannabis sativa HOM05D003968 ORTHO05D004077 1.0e-37 161.0 228 59.6
Peaxi162Scf00128g01760 Petunia axillaris HOM05D003968 ORTHO05D004077 1.0e-37 161.0 216 45.8
COL.COLO4_11740 Corchorus olitorius HOM05D003968 ORTHO05D004077 1.3e-37 160.6 231 51.5
Lsat_1_v5_gn_8_147160 Lactuca sativa HOM05D003968 ORTHO05D004077 1.8e-37 160.2 260 46.9
HanXRQChr12g0362341 Helianthus annuus HOM05D003968 ORTHO05D004077 3.0e-37 159.5 216 60.2
TWI18G0914 Tripterygium wilfordii HOM05D003968 ORTHO05D004077 3.0e-37 159.5 226 53.5
Nn3g16325 Nelumbo nucifera HOM05D003968 ORTHO05D004077 3.9e-37 159.1 218 55.0
HanXRQChr08g0210131 Helianthus annuus HOM05D003968 ORTHO05D004077 6.7e-37 158.3 226 58.8
ClCG07G011730 Citrullus lanatus HOM05D003968 ORTHO05D004077 1.1e-36 157.5 221 62.0
MBI07_g37482_MAGBIO Magnolia biondii HOM05D003968 ORTHO05D004077 1.5e-36 157.1 215 52.6
Medtr7g005500 Medicago truncatula HOM05D003968 ORTHO05D004077 1.5e-36 157.1 213 60.6
MSTRG.8041 Avicennia marina HOM05D003968 ORTHO05D004077 3.3e-36 156.0 221 49.3
CSS0048086 Camellia sinensis var. sinensis HOM05D003968 ORTHO05D004077 4.3e-36 155.6 224 65.6
Lj6C835T0 Lonicera japonica HOM05D003968 ORTHO05D004077 4.3e-36 155.6 214 49.5
MSTRG.468 Avicennia marina HOM05D003968 ORTHO05D004077 5.7e-36 155.2 232 48.3
Actinidia22131 Actinidia chinensis HOM05D003968 ORTHO05D004077 1.3e-35 154.1 218 61.5
AL4G29180 Arabidopsis lyrata HOM05D003968 ORTHO05D004077 1.3e-35 154.1 216 56.9
AT2G33510 Arabidopsis thaliana HOM05D003968 ORTHO05D004077 1.3e-35 154.1 216 56.5
SalBow2G1659 Salvia bowleyana HOM05D003968 ORTHO05D004077 1.6e-35 153.7 228 47.4
Ah.03g135740 Amaranthus hybridus HOM05D003968 ORTHO05D004077 2.2e-35 153.3 237 55.3
Cpa.g.sc123.52 Carica papaya HOM05D003968 ORTHO05D004077 2.2e-35 153.3 214 52.8
THA.LOC104814203 Tarenaya hassleriana HOM05D003968 ORTHO05D004077 3.7e-35 152.5 218 50.9
Lalb_Chr04g0257091 Lupinus albus HOM05D003968 ORTHO05D004077 1.4e-34 150.6 206 63.1
Psat0s2399g0040 Pisum sativum HOM05D003968 ORTHO05D004077 3.1e-34 149.4 215 51.2
THA.LOC104820530 Tarenaya hassleriana HOM05D003968 ORTHO05D004077 1.2e-33 147.5 215 46.0
Ah.02g131150 Amaranthus hybridus HOM05D003968 ORTHO05D004077 2.0e-33 146.7 222 49.1
Migut.K01036 Erythranthe guttata HOM05D003968 ORTHO05D004077 2.0e-33 146.7 229 47.6
Cc11_g17440 Coffea canephora HOM05D003968 ORTHO05D004077 2.6e-33 146.4 249 50.2
CSS0023603 Camellia sinensis var. sinensis HOM05D003968 ORTHO05D004077 4.5e-33 145.6 214 44.9
CDE06G0253 Ceratophyllum demersum HOM05D003968 ORTHO05D004077 7.7e-33 144.8 215 39.1
CARHR127520 Cardamine hirsuta HOM05D003968 ORTHO05D004077 1.3e-32 144.1 211 55.9
Thhalv10017284m.g Eutrema salsugineum HOM05D003968 ORTHO05D004077 1.3e-32 144.1 211 57.8
Nitab4.5_0001600g0080 Nicotiana tabacum HOM05D003968 ORTHO05D004077 1.3e-32 144.1 206 45.6
TPR.G15634 Trifolium pratense HOM05D003968 ORTHO05D004077 1.7e-32 143.7 213 65.3
Aqoxy5G03211 Aquilegia oxysepala HOM05D003968 ORTHO05D004077 2.2e-32 143.3 221 55.7
CAN.G1277.6 Capsicum annuum HOM05D003968 ORTHO05D004077 2.2e-32 143.3 220 47.7
Lalb_Chr14g0375131 Lupinus albus HOM05D003968 ORTHO05D004077 2.2e-32 143.3 209 62.2
Nn4g22193 Nelumbo nucifera HOM05D003968 ORTHO05D004077 2.2e-32 143.3 218 49.1
Carub.0004s1514 Capsella rubella HOM05D003968 ORTHO05D004077 2.9e-32 142.9 213 59.2
unitig_747.g21116 Utricularia gibba HOM05D003968 ORTHO05D004077 6.5e-32 141.7 222 41.0
DCAR_024638 Daucus carota HOM05D003968 ORTHO05D004077 1.1e-31 141.0 238 41.6
BcaB02g10569 Brassica carinata HOM05D003968 ORTHO05D004077 2.5e-31 139.8 223 55.6
CDE02G3264 Ceratophyllum demersum HOM05D003278 ORTHO05D003738 1.2e-30 137.5 211 38.9
CsaV3_6G007850 Cucumis sativus L. HOM05D003968 ORTHO05D004077 1.2e-30 137.5 215 54.0
MELO3C022347.2 Cucumis melo HOM05D003968 ORTHO05D004077 1.6e-30 137.1 215 51.6
A05p12030 Brassica napus HOM05D003968 ORTHO05D004077 2.7e-30 136.3 221 55.2
Hund25497 Selenicereus undatus HOM05D003968 ORTHO05D004077 6.1e-30 135.2 219 49.8
ClCG06G001810 Citrullus lanatus HOM05D003968 ORTHO05D004077 1.4e-29 134.0 214 51.9
MBI11_g37080_MAGBIO Magnolia biondii HOM05D003968 ORTHO05D004077 1.8e-29 133.7 139 58.3
BcaC02g11436 Brassica carinata HOM05D003968 ORTHO05D004077 6.7e-29 131.7 228 55.7
C04p15610 Brassica napus HOM05D003968 ORTHO05D004077 6.7e-29 131.7 228 55.7
Sp4g15850 Schrenkiella parvula HOM05D003968 ORTHO05D004077 1.1e-28 131.0 218 50.5
BcaC01g05837 Brassica carinata HOM05D003968 ORTHO05D004077 2.0e-28 130.2 218 50.9
unitig_26.g10423 Utricularia gibba HOM05D003968 ORTHO05D004077 4.4e-28 129.0 138 47.1
unitig_749.g13321 Utricularia gibba HOM05D003968 ORTHO05D004077 4.4e-28 129.0 211 38.4
BcaB01g03931 Brassica carinata HOM05D003968 ORTHO05D004077 7.4e-28 128.3 210 51.9
Aa31LG9G13440 Aethionema arabicum HOM05D003968 ORTHO05D004077 1.3e-27 127.5 202 49.0
Sed0012192 Sechium edule HOM05D003968 ORTHO05D004077 1.3e-27 127.5 214 54.7
Sopen01g005310 Solanum pennellii HOM05D003968 ORTHO05D004077 1.3e-27 127.5 225 39.1
BcaC02g07799 Brassica carinata HOM05D003968 ORTHO05D004077 1.7e-27 127.1 232 50.0
A03p18770 Brassica napus HOM05D003968 ORTHO05D004077 1.7e-27 127.1 210 51.9
Lsat_1_v5_gn_4_1260 Lactuca sativa HOM05D003968 ORTHO05D004077 1.7e-27 127.1 212 56.1
BraA03t11137Z Brassica rapa HOM05D003968 ORTHO05D004077 2.2e-27 126.7 210 52.4
THA.LOC104812600 Tarenaya hassleriana HOM05D003968 ORTHO05D004077 2.8e-27 126.3 210 48.6
C03p21930 Brassica napus HOM05D003968 ORTHO05D004077 4.8e-27 125.6 210 51.4
Solyc01g009770.3 Solanum lycopersicum HOM05D003968 ORTHO05D004077 6.3e-27 125.2 218 39.0
Aa31sc415G10 Aethionema arabicum HOM05D003968 ORTHO05D004077 1.1e-26 124.4 216 47.7
Sp1g24250 Schrenkiella parvula HOM05D003968 ORTHO05D004077 1.1e-26 124.4 218 48.6
BraA05t20145Z Brassica rapa HOM05D003968 ORTHO05D004077 1.4e-26 124.0 234 49.6
CsaV3_4G002470 Cucumis sativus L. HOM05D003968 ORTHO05D004077 1.4e-26 124.0 216 59.7
PSO478G1150 Papaver somniferum HOM05D003968 ORTHO05D004077 1.4e-26 124.0 226 54.4
Thhalv10008849m.g Eutrema salsugineum HOM05D003968 ORTHO05D004077 1.8e-26 123.6 220 49.5
A04p25820 Brassica napus HOM05D003968 ORTHO05D004077 2.4e-26 123.2 231 48.9
C04p63030 Brassica napus HOM05D003968 ORTHO05D004077 2.4e-26 123.2 232 50.0
BcaB06g28694 Brassica carinata HOM05D003968 ORTHO05D004077 3.1e-26 122.9 232 46.1
PSO017G3780 Papaver somniferum HOM05D003968 ORTHO05D004077 4.1e-26 122.5 226 54.4
PGSC0003DMG400030000 Solanum tuberosum HOM05D003968 ORTHO05D004077 6.9e-26 121.7 223 38.1
TAR622G0782 Trochodendron aralioides HOM05D003968 ORTHO05D004077 2.0e-25 120.2 213 38.0
BraA08t34544Z Brassica rapa HOM05D003968 ORTHO05D004077 2.6e-25 119.8 214 43.5
Carub.0001s2650 Capsella rubella HOM05D003968 ORTHO05D004077 2.6e-25 119.8 218 50.0
MELO3C017796.2 Cucumis melo HOM05D003968 ORTHO05D004077 3.4e-25 119.4 227 59.5
ATR0582G076 Amborella trichopoda HOM05D003968 ORTHO05D004077 7.7e-25 118.2 212 40.6
BolC4t23129H Brassica oleracea HOM05D003968 ORTHO05D004077 1.3e-24 117.5 241 51.9
AT1G28070 Arabidopsis thaliana HOM05D003968 ORTHO05D004077 3.8e-24 115.9 213 49.3
BcaB03g13960 Brassica carinata HOM05D003968 ORTHO05D004077 5.0e-24 115.5 209 34.9
A08p25930 Brassica napus HOM05D003968 ORTHO05D004077 5.0e-24 115.5 214 41.6
BolC4t27780H Brassica oleracea HOM05D003968 ORTHO05D004077 1.4e-23 114.0 245 47.3
A07p11490 Brassica napus HOM05D003968 ORTHO05D004077 3.2e-23 112.8 209 35.4
BraA04t18084Z Brassica rapa HOM05D003968 ORTHO05D004077 3.2e-23 112.8 244 46.7
BraA07t28938Z Brassica rapa HOM05D003968 ORTHO05D004077 3.2e-23 112.8 209 35.4
C03p74720 Brassica napus HOM05D003968 ORTHO05D004077 4.2e-23 112.5 214 43.5
SGA_v2.0_scaffold80G25944 Striga asiatica HOM05D003968 ORTHO05D004077 4.2e-23 112.5 132 49.2
CARHR027520 Cardamine hirsuta HOM05D003968 ORTHO05D004077 5.5e-23 112.1 211 45.0
BolC3t19720H Brassica oleracea HOM05D003968 ORTHO05D004077 7.9e-22 108.2 214 42.1
PSO675G4434 Papaver somniferum HOM05D003968 ORTHO05D004077 7.9e-22 108.2 138 51.4
BcaC01g00004 Brassica carinata HOM05D003968 ORTHO05D004077 1.8e-21 107.1 214 41.1
PSO229G0040 Papaver somniferum HOM05D003968 ORTHO05D004077 2.3e-21 106.7 151 45.0
Rhsim12G0020700 Rhododendron simsii HOM05D003968 ORTHO05D004077 6.7e-21 105.1 144 46.5
BcaC05g26810 Brassica carinata HOM05D003968 ORTHO05D004077 1.1e-20 104.4 143 40.6
CSS0031909 Camellia sinensis var. sinensis HOM05D003968 ORTHO05D004077 2.8e-19 99.8 242 36.0
BcaC06g35328 Brassica carinata HOM05D003968 ORTHO05D004077 3.7e-19 99.4 209 32.5
C07p17340 Brassica napus HOM05D003968 ORTHO05D004077 3.7e-19 99.4 209 32.5
BolC7t42238H Brassica oleracea HOM05D003968 ORTHO05D004077 3.7e-19 99.4 209 32.5
A09p38020 Brassica napus HOM05D003968 ORTHO05D004077 3.1e-18 96.3 143 54.5
BraA09t39312Z Brassica rapa HOM05D003968 ORTHO05D004077 3.1e-18 96.3 143 54.5
BcaC05g26624 Brassica carinata HOM05D003968 ORTHO05D004077 9.1e-18 94.7 143 55.2
C05p26740 Brassica napus HOM05D003968 ORTHO05D004077 9.1e-18 94.7 143 55.2
Oeu019428.1 Olea europaea HOM05D003968 ORTHO05D004077 9.1e-18 94.7 205 32.2
HPP92_023087 Vanilla planifolia HOM05D003968 ORTHO05D004077 9.1e-18 94.7 231 39.4
Gorai.002G022000 Gossypium raimondii HOM05D003968 ORTHO05D004077 1.7e-16 90.5 211 49.8
Gohir.D01G019600 Gossypium hirsutum HOM05D003968 ORTHO05D004077 8.5e-16 88.2 211 48.8
Gohir.A01G021200 Gossypium hirsutum HOM05D003968 ORTHO05D004077 1.9e-15 87.0 211 48.8
MBI01_g34379_MAGBIO Magnolia biondii HOM05D003968 ORTHO05D004077 3.6e-14 82.8 121 46.3
BolC5t31398H Brassica oleracea HOM05D003968 ORTHO05D004077 3.0e-13 79.7 143 50.3
HPP92_011550 Vanilla planifolia HOM05D003968 ORTHO05D004077 5.2e-13 79.0 235 34.5
Os02g0516400 Oryza sativa ssp. japonica HOM05D003968 ORTHO05D004077 2.8e-11 73.2 124 36.3
BcaC05g26622 Brassica carinata HOM05D003968 ORTHO05D004077 8.2e-11 71.6 44 68.2
HPP92_006446 Vanilla planifolia HOM05D003968 ORTHO05D004077 1.3e-08 64.3 116 42.2
AL1G41580 Arabidopsis lyrata HOM05D003968 ORTHO05D004077 2.2e-08 63.5 35 74.3
CDE02G1122 Ceratophyllum demersum HOM05D003968 ORTHO05D004077 1.1e-07 61.2 130 30.8
CDE09G1092 Ceratophyllum demersum HOM05D003968 ORTHO05D004077 2.5e-07 60.1 162 27.8
Atru.chr1.737 Acer truncatum HOM05D003968 ORTHO05D004077 7.2e-07 58.5 29 86.2
SEGI_36735 Sequoiadendron giganteum HOM05D012184 ORTHO05D004077 2.1e-06 57.0 129 27.9
Pp3c27_4970 Physcomitrium patens HOM05D013579 ORTHO05D004077 2.7e-06 56.6 50 48.0
Pp3c16_12300 Physcomitrium patens HOM05D013579 ORTHO05D001508 6.1e-06 55.5 44 52.3
SEGI_23541 Sequoiadendron giganteum HOM05D012184 ORTHO05D004077 8.0e-06 55.1 129 27.1


User provided reference genes

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