Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_4g20250 Fragaria vesca HOM05D004325 ORTHO05D005470 6.4e-100 367.5 191 100.0
RcHm_v2.0_Chr4g0425791 Rosa chinensis HOM05D004325 ORTHO05D005470 9.5e-96 353.6 190 96.8
FAN12G3971 Fragaria x ananassa HOM05D004325 ORTHO05D005470 8.1e-95 350.5 224 85.3
FAN07G0536 Fragaria x ananassa HOM05D004325 ORTHO05D005470 2.4e-91 339.0 233 80.7
Prupe.1G115000 Prunus persica HOM05D004325 ORTHO05D005470 3.3e-88 328.6 184 91.8
MD16G1151300 Malus domestica HOM05D004325 ORTHO05D005470 6.2e-87 324.3 184 90.2
CANSAT78G0850 Cannabis sativa HOM05D004325 ORTHO05D005470 1.4e-86 323.2 193 88.6
MD13G1150800 Malus domestica HOM05D004325 ORTHO05D005470 3.1e-86 322.0 187 89.8
Thecc.04G303800 Theobroma cacao HOM05D004325 ORTHO05D005470 9.9e-85 317.0 190 85.8
Cfa015290 Carpinus fangiana HOM05D004325 ORTHO05D005470 2.9e-84 315.5 188 86.2
Manes.03G206300 Manihot esculenta HOM05D004325 ORTHO05D005470 6.4e-84 314.3 187 85.6
Haze_01324 Corylus avellana HOM05D004325 ORTHO05D005470 1.1e-83 313.5 186 86.6
Eucgr.E02007 Eucalyptus grandis HOM05D004325 ORTHO05D005470 1.1e-83 313.5 191 84.3
Gohir.A01G034900 Gossypium hirsutum HOM05D004325 ORTHO05D005470 2.4e-83 312.4 189 85.2
COL.COLO4_34588 Corchorus olitorius HOM05D004325 ORTHO05D005470 4.1e-83 311.6 188 85.6
Gohir.D01G023556 Gossypium hirsutum HOM05D004325 ORTHO05D005470 4.1e-83 311.6 189 85.2
Gorai.002G030800 Gossypium raimondii HOM05D004325 ORTHO05D005470 4.1e-83 311.6 189 85.2
Duzib151G0878 Durio zibethinus HOM05D004325 ORTHO05D005470 1.2e-82 310.1 183 85.8
Medtr2g033830 Medicago truncatula HOM05D004325 ORTHO05D005470 6.0e-82 307.8 184 87.0
Duzib052G1161 Durio zibethinus HOM05D004325 ORTHO05D005470 1.3e-81 306.6 185 84.3
PGR004G2019 Punica granatum HOM05D004325 ORTHO05D005470 6.6e-81 304.3 190 83.2
VMungo0540G0568 Vigna mungo HOM05D004325 ORTHO05D005470 6.6e-81 304.3 195 82.6
Eucgr.D01575 Eucalyptus grandis HOM05D004325 ORTHO05D005470 8.6e-81 303.9 191 82.2
Actinidia13352 Actinidia chinensis HOM05D004325 ORTHO05D005470 2.5e-80 302.4 183 84.7
Psat1g162400 Pisum sativum HOM05D004325 ORTHO05D005470 7.3e-80 300.8 188 84.0
arahy.Tifrunner.gnm1.ann1.H88EK8 Arachis hypogaea HOM05D004325 ORTHO05D005470 1.2e-79 300.1 182 83.5
arahy.Tifrunner.gnm1.ann1.RG9184 Arachis hypogaea HOM05D004325 ORTHO05D005470 1.2e-79 300.1 182 83.5
TAR633G1272 Trochodendron aralioides HOM05D004325 ORTHO05D005470 1.2e-79 300.1 184 83.2
Ca_00969_v3 Cicer arietinum L. HOM05D004325 ORTHO05D005470 1.6e-79 299.7 188 83.5
TAR362G0217 Trochodendron aralioides HOM05D004325 ORTHO05D005470 1.6e-79 299.7 186 82.3
Atru.chr4.3046 Acer truncatum HOM05D004325 ORTHO05D005470 2.1e-79 299.3 172 87.8
Peaxi162Scf00228g00059 Petunia axillaris HOM05D004325 ORTHO05D005470 4.7e-79 298.1 190 80.0
Cpa.g.sc9.38 Carica papaya HOM05D004325 ORTHO05D005470 8.1e-79 297.4 182 83.5
TPR.G30807 Trifolium pratense HOM05D004325 ORTHO05D005470 8.1e-79 297.4 187 82.4
Cc03_g00680 Coffea canephora HOM05D004325 ORTHO05D005470 1.1e-78 297.0 183 84.2
Dinv44270 Davidia involucrata HOM05D004325 ORTHO05D005470 1.1e-78 297.0 182 83.5
Glyma.09G034400 Glycine max HOM05D004325 ORTHO05D005470 1.1e-78 297.0 180 85.0
Sed0024233 Sechium edule HOM05D004325 ORTHO05D005470 1.4e-78 296.6 193 80.8
arahy.Tifrunner.gnm1.ann1.NK7FC1 Arachis hypogaea HOM05D004325 ORTHO05D005470 1.8e-78 296.2 182 82.4
PSO421G0271 Papaver somniferum HOM05D004325 ORTHO05D005470 1.8e-78 296.2 187 80.7
Lj6g0013793 Lotus japonicus HOM05D004325 ORTHO05D005470 2.4e-78 295.8 190 80.5
Phvul.006G119000 Phaseolus vulgaris HOM05D004325 ORTHO05D005470 2.4e-78 295.8 180 83.9
Glyma.15G139100 Glycine max HOM05D004325 ORTHO05D005470 4.0e-78 295.0 188 82.4
Lalb_Chr12g0200831 Lupinus albus HOM05D004325 ORTHO05D005470 4.0e-78 295.0 184 84.2
Aa31LG11G8140 Aethionema arabicum HOM05D004325 ORTHO05D005470 5.2e-78 294.7 199 76.4
ECA233G2476 Erigeron canadensis HOM05D004325 ORTHO05D005470 5.2e-78 294.7 195 79.0
CSS0027180 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D005470 8.9e-78 293.9 189 79.4
Migut.N00036 Erythranthe guttata HOM05D004325 ORTHO05D005470 1.5e-77 293.1 191 80.1
Potri.008G103400 Populus trichocarpa HOM05D004325 ORTHO05D005470 1.5e-77 293.1 197 79.2
AT5G49510 Arabidopsis thaliana HOM05D004325 ORTHO05D005470 2.0e-77 292.7 187 78.1
Potri.010G147600 Populus trichocarpa HOM05D004325 ORTHO05D005470 2.6e-77 292.4 191 79.6
Carub.0008s0936 Capsella rubella HOM05D004325 ORTHO05D005470 3.4e-77 292.0 187 78.1
PSO832G3679 Papaver somniferum HOM05D004325 ORTHO05D005470 3.4e-77 292.0 190 80.0
THA.LOC104827099 Tarenaya hassleriana HOM05D004325 ORTHO05D005470 3.4e-77 292.0 178 82.6
AL8G23260 Arabidopsis lyrata HOM05D004325 ORTHO05D005470 4.4e-77 291.6 187 77.5
BcaC04g23736 Brassica carinata HOM05D004325 ORTHO05D005470 4.4e-77 291.6 185 77.8
C09p05230 Brassica napus HOM05D004325 ORTHO05D005470 4.4e-77 291.6 185 77.8
MBI19_g03261_MAGBIO Magnolia biondii HOM05D004325 ORTHO05D005470 4.4e-77 291.6 174 84.5
CARHR287830 Cardamine hirsuta HOM05D004325 ORTHO05D005470 5.8e-77 291.2 186 78.5
TWI73G0086 Tripterygium wilfordii HOM05D004325 ORTHO05D005470 5.8e-77 291.2 184 80.4
ATR0693G272 Amborella trichopoda HOM05D004325 ORTHO05D005470 7.6e-77 290.8 185 82.2
Ciclev10005911m.g Citrus clementina HOM05D004325 ORTHO05D005470 7.6e-77 290.8 192 78.1
PSO063G1209 Papaver somniferum HOM05D004325 ORTHO05D005470 7.6e-77 290.8 190 79.5
Thhalv10004957m.g Eutrema salsugineum HOM05D004325 ORTHO05D005470 1.3e-76 290.0 187 77.5
Sabra08G0078100 Salix brachista HOM05D004325 ORTHO05D005470 1.7e-76 289.7 191 79.1
A09p04850 Brassica napus HOM05D004325 ORTHO05D005470 2.2e-76 289.3 185 77.3
BraA09t36122Z Brassica rapa HOM05D004325 ORTHO05D005470 2.2e-76 289.3 185 76.8
Sp2g19810 Schrenkiella parvula HOM05D004325 ORTHO05D005470 2.2e-76 289.3 187 77.0
SpUn0021_0040 Schrenkiella parvula HOM05D004325 ORTHO05D005470 2.2e-76 289.3 187 77.0
Nitab4.5_0000647g0250 Nicotiana tabacum HOM05D004325 ORTHO05D005470 4.9e-76 288.1 176 82.4
Rhsim02G0002800 Rhododendron simsii HOM05D004325 ORTHO05D005470 4.9e-76 288.1 183 80.9
ClCG05G006650 Citrullus lanatus HOM05D004325 ORTHO05D005470 1.1e-75 287.0 192 79.7
Nitab4.5_0004165g0020 Nicotiana tabacum HOM05D004325 ORTHO05D005470 1.1e-75 287.0 176 81.8
Solyc05g053390.4 Solanum lycopersicum HOM05D004325 ORTHO05D005470 1.4e-75 286.6 183 79.8
Sopen05g031900 Solanum pennellii HOM05D004325 ORTHO05D005470 1.9e-75 286.2 183 79.8
PGSC0003DMG400027209 Solanum tuberosum HOM05D004325 ORTHO05D005470 1.9e-75 286.2 183 79.8
PSO724G0368 Papaver somniferum HOM05D004325 ORTHO05D005470 3.2e-75 285.4 189 77.2
Sed0016650 Sechium edule HOM05D004325 ORTHO05D005470 3.2e-75 285.4 191 77.5
CSS0047955 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D005470 7.1e-75 284.3 174 81.6
Lsat_1_v5_gn_1_117981 Lactuca sativa HOM05D004325 ORTHO05D005470 9.3e-75 283.9 184 80.4
Sc25g0003210 Simmondsia chinensis HOM05D004325 ORTHO05D005470 9.3e-75 283.9 181 78.5
unitig_0.g2580 Utricularia gibba HOM05D004325 ORTHO05D005470 9.3e-75 283.9 193 77.2
HanXRQChr17g0569361 Helianthus annuus HOM05D004325 ORTHO05D005470 1.2e-74 283.5 189 78.3
Os12g0562900 Oryza sativa ssp. japonica HOM05D004325 ORTHO05D005470 1.2e-74 283.5 173 83.2
BcaB04g19615 Brassica carinata HOM05D004325 ORTHO05D005470 1.6e-74 283.1 188 75.5
Hma1.2p1_0013F.1_g008360 Hydrangea macrophylla HOM05D004325 ORTHO05D005470 2.1e-74 282.7 174 81.0
MSTRG.24825 Avicennia marina HOM05D004325 ORTHO05D005470 2.7e-74 282.3 179 81.0
AUR62039261 Chenopodium quinoa HOM05D004325 ORTHO05D005470 2.7e-74 282.3 189 76.7
AUR62016229 Chenopodium quinoa HOM05D004325 ORTHO05D005470 4.6e-74 281.6 187 77.5
CsaV3_3G015280 Cucumis sativus L. HOM05D004325 ORTHO05D005470 4.6e-74 281.6 191 78.5
A06p38330 Brassica napus HOM05D004325 ORTHO05D005470 7.8e-74 280.8 187 74.9
C07p39920 Brassica napus HOM05D004325 ORTHO05D005470 7.8e-74 280.8 187 74.9
BolC7t44524H Brassica oleracea HOM05D004325 ORTHO05D005470 7.8e-74 280.8 187 74.9
BraA06t26747Z Brassica rapa HOM05D004325 ORTHO05D005470 7.8e-74 280.8 187 74.9
THA.LOC104802708 Tarenaya hassleriana HOM05D004325 ORTHO05D005470 7.8e-74 280.8 193 77.2
HPP92_027563 Vanilla planifolia HOM05D004325 ORTHO05D005470 1.3e-73 280.0 199 74.9
SGA_v2.0_scaffold528G52737 Striga asiatica HOM05D004325 ORTHO05D005470 2.3e-73 279.3 210 71.4
Zm00001eb136920 Zea mays HOM05D004325 ORTHO05D005470 2.3e-73 279.3 182 78.6
Zm00001eb028520 Zea mays HOM05D004325 ORTHO05D005470 6.6e-73 277.7 182 78.6
Ah.13g071390 Amaranthus hybridus HOM05D004325 ORTHO05D005470 2.5e-72 275.8 191 74.3
Hund03133 Selenicereus undatus HOM05D004325 ORTHO05D005470 3.3e-72 275.4 178 79.8
Nitab4.5_0000177g0050 Nicotiana tabacum HOM05D004325 ORTHO05D005470 7.3e-72 274.2 188 75.5
CDE01G0033 Ceratophyllum demersum HOM05D004325 ORTHO05D005470 1.6e-71 273.1 184 76.1
Nitab4.5_0000891g0010 Nicotiana tabacum HOM05D004325 ORTHO05D005470 2.1e-71 272.7 188 75.5
vmacro15176 Vaccinium macrocarpon HOM05D004325 ORTHO05D005470 4.8e-71 271.6 224 67.0
Hund11985 Selenicereus undatus HOM05D004325 ORTHO05D005470 1.1e-70 270.4 187 74.3
Sabra10G0113800 Salix brachista HOM05D004325 ORTHO05D005470 1.8e-70 269.6 233 64.8
Aqoxy3G01635 Aquilegia oxysepala HOM05D004325 ORTHO05D005470 4.0e-70 268.5 185 75.7
BolC9t53449H Brassica oleracea HOM05D004325 ORTHO05D005470 7.6e-69 264.2 245 58.8
Lj3A833G34 Lonicera japonica HOM05D004325 ORTHO05D005470 4.2e-67 258.5 156 85.3
TWI09G1034 Tripterygium wilfordii HOM05D004325 ORTHO05D005470 7.1e-67 257.7 184 73.9
Eucgr.E01999 Eucalyptus grandis HOM05D004325 ORTHO05D005470 1.3e-63 246.9 191 70.2
SalBow5G2618 Salvia bowleyana HOM05D004325 ORTHO05D005470 1.3e-63 246.9 164 78.7
EL10Ac3g05527 Beta vulgaris HOM05D004325 ORTHO05D005470 1.1e-62 243.8 164 78.7
Nn3g21742 Nelumbo nucifera HOM05D004325 ORTHO05D005470 5.3e-62 241.5 184 70.1
Mapoly0057s0039 Marchantia polymorpha HOM05D004325 ORTHO05D005470 2.0e-61 239.6 179 65.4
SEGI_09014 Sequoiadendron giganteum HOM05D004325 ORTHO05D005470 6.4e-60 234.6 185 65.4
TPR.G28959 Trifolium pratense HOM05D004325 ORTHO05D005470 1.9e-59 233.0 141 84.4
CAN.G945.3 Capsicum annuum HOM05D004325 ORTHO05D005470 4.2e-59 231.9 138 84.1
SMO116G0307 Selaginella moellendorffii HOM05D004325 ORTHO05D005470 4.6e-58 228.4 179 64.8
GSVIVG01034969001 Vitis vinifera HOM05D004325 ORTHO05D005470 1.8e-57 226.5 129 88.4
Oeu001162.1 Olea europaea HOM05D004325 ORTHO05D005470 5.1e-57 224.9 136 85.3
CiPaw.01G136700 Carya illinoinensis HOM05D004325 ORTHO05D005470 3.3e-56 222.2 129 86.8
Pp3c8_18130 Physcomitrium patens HOM05D004325 ORTHO05D005470 2.8e-55 219.2 172 64.0
AagrBONN_evm.TU.Sc2ySwM_344.4436 Anthoceros agrestis HOM05D004325 ORTHO05D005470 6.9e-54 214.5 173 59.5
Lalb_Chr13g0298551 Lupinus albus HOM05D004325 ORTHO05D005470 1.2e-50 203.8 136 77.9
CiPaw.02G073600 Carya illinoinensis HOM05D004325 ORTHO05D005470 1.3e-49 200.3 203 60.6
Eucgr.E01982 Eucalyptus grandis HOM05D004325 ORTHO05D005470 3.0e-49 199.1 123 82.1
MELO3C006723.2 Cucumis melo HOM05D004325 ORTHO05D005470 1.9e-48 196.4 138 74.6
HPP92_017247 Vanilla planifolia HOM05D004325 ORTHO05D005470 8.2e-47 191.0 126 80.2
CDE12G0495 Ceratophyllum demersum HOM05D004325 ORTHO05D005470 1.5e-45 186.8 131 73.3
Sopen01g024490 Solanum pennellii HOM05D004325 ORTHO05D005470 7.6e-45 184.5 110 84.5
MSTRG.3849 Avicennia marina HOM05D004325 ORTHO05D005470 1.3e-44 183.7 137 69.3
QL06p012738 Quercus lobata HOM05D004325 ORTHO05D005470 3.0e-41 172.6 106 83.0
Eucgr.D01586 Eucalyptus grandis HOM05D004325 ORTHO05D005470 3.9e-41 172.2 102 83.3
Eucgr.D01598 Eucalyptus grandis HOM05D004325 ORTHO05D005470 8.2e-39 164.5 109 77.1
Actinidia18462 Actinidia chinensis HOM05D004325 ORTHO05D005470 3.4e-37 159.1 113 72.6
Eucgr.D01580 Eucalyptus grandis HOM05D004325 ORTHO05D005470 1.9e-35 153.3 93 80.6
PRCOL_00000812 Prasinoderma coloniale HOM05D004325 ORTHO05D005470 1.6e-34 150.2 166 46.4
HPP92_017255 Vanilla planifolia HOM05D004325 ORTHO05D005470 3.9e-33 145.6 102 77.5
MCO08G322 Micromonas commoda HOM05D004325 ORTHO05D005470 2.2e-31 139.8 162 44.4
Dinv15146 Davidia involucrata HOM05D004325 ORTHO05D005470 2.8e-31 139.4 102 71.6
QL06p012730 Quercus lobata HOM05D004325 ORTHO05D005470 8.2e-31 137.9 90 81.1
Eucgr.D01581 Eucalyptus grandis HOM05D004325 ORTHO05D005470 1.1e-30 137.5 82 82.9
Cre06.g261650 Chlamydomonas reinhardtii HOM05D004325 ORTHO05D005470 7.7e-29 131.3 183 38.8
DCAR_026989 Daucus carota HOM05D004325 ORTHO05D005470 1.0e-28 131.0 92 77.2
Haze_26161 Corylus avellana HOM05D004325 ORTHO05D005470 7.2e-27 124.8 171 38.0
MBI14_g36884_MAGBIO Magnolia biondii HOM05D004325 ORTHO05D005470 7.2e-27 124.8 104 67.3
Eucgr.D01577 Eucalyptus grandis HOM05D004325 ORTHO05D005470 9.4e-27 124.4 102 64.7
Glyma.07G238200 Glycine max HOM05D004325 ORTHO05D005470 4.7e-26 122.1 75 81.3
Glyma.17G035301 Glycine max HOM05D004325 ORTHO05D005470 4.7e-26 122.1 102 66.7
CBR_g12436 Chara braunii HOM05D004325 ORTHO05D005470 1.0e-25 120.9 88 65.9
Actinidia31558 Actinidia chinensis HOM05D004325 ORTHO05D005470 1.3e-20 104.0 62 82.3
Eucgr.E01978 Eucalyptus grandis HOM05D004325 ORTHO05D005470 3.3e-16 89.4 60 71.7
TPR.G26018 Trifolium pratense HOM05D004325 ORTHO05D049290 2.2e-12 76.6 47 83.0
CSS0004484 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D022134 3.8e-12 75.9 111 47.7
Solyc01g058597.1 Solanum lycopersicum HOM05D004325 ORTHO05D005470 6.5e-12 75.1 47 76.6
CSS0039135 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D022134 1.1e-11 74.3 111 46.8
CSS0044452 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D022134 1.1e-11 74.3 111 46.8
CSS0031168 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D022134 4.2e-11 72.4 111 45.9
CSS0013046 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D022134 5.5e-11 72.0 111 45.9
TPR.G25439 Trifolium pratense HOM05D004325 ORTHO05D005470 8.8e-09 64.7 115 41.7
Actinidia14254 Actinidia chinensis HOM05D004325 ORTHO05D005470 2.8e-07 59.7 36 77.8
Nn4g25553 Nelumbo nucifera HOM05D004325 ORTHO05D049290 8.3e-07 58.2 38 73.7


User provided reference genes

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