Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_3g42010 Fragaria vesca HOM05D004608 ORTHO05D006533 5.0e-227 790.8 410 100.0
FAN25G0703 Fragaria x ananassa HOM05D004608 ORTHO05D006533 6.3e-222 773.9 421 96.4
FAN16G3187 Fragaria x ananassa HOM05D004608 ORTHO05D006533 1.1e-221 773.1 421 96.4
FAN11G3108 Fragaria x ananassa HOM05D004608 ORTHO05D006533 1.8e-221 772.3 441 92.7
FAN21G2140 Fragaria x ananassa HOM05D004608 ORTHO05D006533 5.0e-219 764.2 441 91.8
RcHm_v2.0_Chr5g0075221 Rosa chinensis HOM05D004608 ORTHO05D006533 2.7e-204 715.3 410 90.0
Prupe.6G031700 Prunus persica HOM05D004608 ORTHO05D006533 4.0e-192 674.9 410 84.6
MD03G1039600 Malus domestica HOM05D004608 ORTHO05D006533 4.9e-190 667.9 410 83.7
MD11G1040100 Malus domestica HOM05D004608 ORTHO05D006533 3.0e-187 658.7 410 82.2
Potri.011G166100 Populus trichocarpa HOM05D004608 ORTHO05D006533 3.6e-185 651.7 411 82.0
Sabra16G0318300 Salix brachista HOM05D004608 ORTHO05D006533 8.9e-184 647.1 416 81.2
Cfa016939 Carpinus fangiana HOM05D004608 ORTHO05D006533 1.2e-183 646.7 410 81.5
Potri.001G469300 Populus trichocarpa HOM05D004608 ORTHO05D006533 1.5e-183 646.4 411 81.3
QL08p001615 Quercus lobata HOM05D004608 ORTHO05D006533 5.8e-183 644.4 409 80.7
Ciclev10008478m.g Citrus clementina HOM05D004608 ORTHO05D006533 1.1e-181 640.2 411 80.0
CiPaw.12G141700 Carya illinoinensis HOM05D004608 ORTHO05D006533 9.2e-181 637.1 411 80.5
Eucgr.F03661 Eucalyptus grandis HOM05D004608 ORTHO05D006533 8.7e-179 630.6 414 80.2
Cpa.g.sc12.91 Carica papaya HOM05D004608 ORTHO05D006533 7.3e-178 627.5 410 79.8
Lj1C897G12 Lonicera japonica HOM05D004608 ORTHO05D006533 1.6e-177 626.3 413 79.4
Glyma.18G072500 Glycine max HOM05D004608 ORTHO05D006533 2.1e-177 625.9 415 79.8
Duzib213G0525 Durio zibethinus HOM05D004608 ORTHO05D006533 2.8e-177 625.5 410 79.0
TWI38G1265 Tripterygium wilfordii HOM05D004608 ORTHO05D006533 2.8e-177 625.5 410 78.8
Glyma.08G337500 Glycine max HOM05D004608 ORTHO05D006533 1.4e-176 623.2 415 79.5
TWI38G2408 Tripterygium wilfordii HOM05D004608 ORTHO05D006533 2.4e-176 622.5 410 78.0
Atru.chr2.3848 Acer truncatum HOM05D004608 ORTHO05D006533 3.1e-176 622.1 407 79.4
PGR031G2516 Punica granatum HOM05D004608 ORTHO05D006533 2.0e-175 619.4 412 77.9
Gohir.A13G130142 Gossypium hirsutum HOM05D004608 ORTHO05D006533 7.6e-175 617.5 412 77.9
THA.LOC104815684 Tarenaya hassleriana HOM05D004608 ORTHO05D006533 9.9e-175 617.1 414 76.8
GSVIVG01014786001 Vitis vinifera HOM05D004608 ORTHO05D006533 1.7e-174 616.3 411 77.9
Sabra11G0139800 Salix brachista HOM05D004608 ORTHO05D006533 2.2e-174 615.9 448 73.9
Thecc.07G005400 Theobroma cacao HOM05D004608 ORTHO05D006533 2.9e-174 615.5 410 77.3
Gohir.D13G133200 Gossypium hirsutum HOM05D004608 ORTHO05D006533 4.9e-174 614.8 412 77.7
CANSAT11G0422 Cannabis sativa HOM05D004608 ORTHO05D006533 8.4e-174 614.0 413 77.0
Haze_09894 Corylus avellana HOM05D004608 ORTHO05D006533 8.4e-174 614.0 422 76.5
Sed0006020 Sechium edule HOM05D004608 ORTHO05D006533 8.4e-174 614.0 407 78.1
SGA_v2.0_scaffold168G38588 Striga asiatica HOM05D004608 ORTHO05D006533 1.6e-172 609.8 413 76.8
VMungo0540G0162 Vigna mungo HOM05D004608 ORTHO05D006533 1.6e-172 609.8 415 77.3
COL.COLO4_07760 Corchorus olitorius HOM05D004608 ORTHO05D006533 2.7e-172 609.0 409 76.0
Gorai.013G149500 Gossypium raimondii HOM05D004608 ORTHO05D006533 2.7e-172 609.0 420 76.2
Phvul.006G060300 Phaseolus vulgaris HOM05D004608 ORTHO05D006533 3.5e-172 608.6 415 78.3
Thhalv10020839m.g Eutrema salsugineum HOM05D004608 ORTHO05D006533 4.6e-172 608.2 410 76.6
Hund22995 Selenicereus undatus HOM05D004608 ORTHO05D006533 4.6e-172 608.2 412 77.4
Ca_14850_v3 Cicer arietinum L. HOM05D004608 ORTHO05D006533 1.0e-171 607.1 417 76.5
Gohir.D05G386600 Gossypium hirsutum HOM05D004608 ORTHO05D006533 1.3e-171 606.7 410 75.1
Sp3g11470 Schrenkiella parvula HOM05D004608 ORTHO05D006533 2.3e-171 605.9 411 76.4
EL10Ac4g07509 Beta vulgaris HOM05D004608 ORTHO05D006533 3.9e-171 605.1 412 77.2
Gorai.009G453300 Gossypium raimondii HOM05D004608 ORTHO05D006533 3.9e-171 605.1 410 74.9
Lalb_Chr15g0082461 Lupinus albus HOM05D004608 ORTHO05D006533 6.6e-171 604.4 413 77.5
Lj6g0013957 Lotus japonicus HOM05D004608 ORTHO05D006533 1.1e-170 603.6 412 78.4
AT3G13235 Arabidopsis thaliana HOM05D004608 ORTHO05D006533 1.5e-170 603.2 415 75.9
CsaV3_7G021370 Cucumis sativus L. HOM05D004608 ORTHO05D006533 1.5e-170 603.2 407 77.1
arahy.Tifrunner.gnm1.ann1.R4UTE8 Arachis hypogaea HOM05D004608 ORTHO05D006533 2.5e-170 602.4 418 77.3
ClCG09G021670 Citrullus lanatus HOM05D004608 ORTHO05D006533 2.5e-170 602.4 429 74.8
HanXRQChr05g0160221 Helianthus annuus HOM05D004608 ORTHO05D006533 2.5e-170 602.4 412 75.7
HanXRQChr11g0334621 Helianthus annuus HOM05D004608 ORTHO05D006533 2.5e-170 602.4 411 76.9
AL3G25090 Arabidopsis lyrata HOM05D004608 ORTHO05D006533 3.3e-170 602.1 416 76.2
Gohir.A04G003100 Gossypium hirsutum HOM05D004608 ORTHO05D006533 3.3e-170 602.1 410 74.4
CARHR087890 Cardamine hirsuta HOM05D004608 ORTHO05D006533 4.3e-170 601.7 415 74.9
Rhsim06G0233900 Rhododendron simsii HOM05D004608 ORTHO05D006533 4.3e-170 601.7 410 76.3
Sed0022757 Sechium edule HOM05D004608 ORTHO05D006533 1.3e-169 600.1 407 76.7
Actinidia30368 Actinidia chinensis HOM05D004608 ORTHO05D006533 1.6e-169 599.7 410 76.1
vmacro11628 Vaccinium macrocarpon HOM05D004608 ORTHO05D006533 3.6e-169 598.6 425 74.6
DCAR_017596 Daucus carota HOM05D004608 ORTHO05D006533 1.1e-168 597.0 406 75.9
CAN.G492.45 Capsicum annuum HOM05D004608 ORTHO05D006533 1.4e-168 596.7 412 75.5
CSS0047803 Camellia sinensis var. sinensis HOM05D004608 ORTHO05D006533 2.4e-168 595.9 411 75.7
TPR.G17932 Trifolium pratense HOM05D004608 ORTHO05D006533 2.4e-168 595.9 414 75.1
Aqoxy4G02317 Aquilegia oxysepala HOM05D004608 ORTHO05D006533 5.3e-168 594.7 411 75.7
arahy.Tifrunner.gnm1.ann1.EI2AUC Arachis hypogaea HOM05D004608 ORTHO05D006533 1.5e-167 593.2 430 74.7
Cc05_g15480 Coffea canephora HOM05D004608 ORTHO05D006533 4.5e-167 591.7 413 75.5
MELO3C013214.2 Cucumis melo HOM05D004608 ORTHO05D006533 7.6e-167 590.9 407 75.9
Migut.M01599 Erythranthe guttata HOM05D004608 ORTHO05D006533 2.2e-166 589.3 416 74.8
C03p46240 Brassica napus HOM05D004608 ORTHO05D006533 4.9e-166 588.2 420 74.8
AUR62017165 Chenopodium quinoa HOM05D004608 ORTHO05D006533 4.9e-166 588.2 410 74.9
BolC3t16895H Brassica oleracea HOM05D004608 ORTHO05D006533 6.4e-166 587.8 422 74.4
BraA03t12964Z Brassica rapa HOM05D004608 ORTHO05D006533 6.4e-166 587.8 414 74.6
A03p38110 Brassica napus HOM05D004608 ORTHO05D006533 8.4e-166 587.4 414 74.6
C01p51800 Brassica napus HOM05D004608 ORTHO05D006533 8.4e-166 587.4 413 75.1
Carub.0003s1265 Capsella rubella HOM05D004608 ORTHO05D006533 8.4e-166 587.4 415 74.2
MBI14_g00953_MAGBIO Magnolia biondii HOM05D004608 ORTHO05D006533 1.9e-165 586.3 411 73.5
AUR62035639 Chenopodium quinoa HOM05D004608 ORTHO05D006533 3.2e-165 585.5 410 75.1
Nn1g07694 Nelumbo nucifera HOM05D004608 ORTHO05D006533 1.2e-164 583.6 410 72.9
Aa31LG8G500 Aethionema arabicum HOM05D004608 ORTHO05D006533 2.7e-164 582.4 423 72.3
ECA236G2785 Erigeron canadensis HOM05D004608 ORTHO05D006533 4.6e-164 581.6 415 73.3
Sopen10g001840 Solanum pennellii HOM05D004608 ORTHO05D006533 7.9e-164 580.9 412 74.3
Solyc10g005890.3 Solanum lycopersicum HOM05D004608 ORTHO05D006533 1.0e-163 580.5 412 74.0
Oeu026626.2 Olea europaea HOM05D004608 ORTHO05D006533 8.7e-163 577.4 420 73.3
Lsat_1_v5_gn_7_116460 Lactuca sativa HOM05D004608 ORTHO05D006533 1.9e-162 576.2 414 74.2
PGSC0003DMG400014406 Solanum tuberosum HOM05D004608 ORTHO05D006533 1.9e-162 576.2 407 74.0
MSTRG.7029 Avicennia marina HOM05D004608 ORTHO05D006533 4.3e-162 575.1 415 73.7
A01p40280 Brassica napus HOM05D004608 ORTHO05D006533 4.3e-162 575.1 414 73.9
BraA01t04064Z Brassica rapa HOM05D004608 ORTHO05D006533 1.4e-160 570.1 414 73.4
PSO541G2325 Papaver somniferum HOM05D004608 ORTHO05D006533 1.4e-160 570.1 412 71.1
CSS0013715 Camellia sinensis var. sinensis HOM05D004608 ORTHO05D006533 1.2e-159 567.0 410 72.4
Dinv40894 Davidia involucrata HOM05D004608 ORTHO05D006533 2.3e-155 552.7 359 79.9
Os02g0198600 Oryza sativa ssp. japonica HOM05D004608 ORTHO05D006533 1.1e-154 550.4 416 70.4
ATR0587G001 Amborella trichopoda HOM05D004608 ORTHO05D006533 1.9e-154 549.7 390 73.1
TAR624G0837 Trochodendron aralioides HOM05D004608 ORTHO05D006533 7.4e-154 547.7 411 71.8
Manes.05G206400 Manihot esculenta HOM05D004608 ORTHO05D006533 1.3e-153 547.0 340 82.6
THA.LOC104801910 Tarenaya hassleriana HOM05D004608 ORTHO05D006533 3.7e-153 545.4 360 77.2
THA.LOC104810298 Tarenaya hassleriana HOM05D004608 ORTHO05D006533 3.7e-153 545.4 360 77.2
Nitab4.5_0007214g0010 Nicotiana tabacum HOM05D004608 ORTHO05D006533 1.2e-151 540.4 412 70.1
Peaxi162Scf00219g00158 Petunia axillaris HOM05D004608 ORTHO05D006533 1.7e-150 536.6 417 69.5
HPP92_021912 Vanilla planifolia HOM05D004608 ORTHO05D006533 2.2e-150 536.2 413 69.0
Psat5g164640 Pisum sativum HOM05D004608 ORTHO05D006533 2.1e-148 529.6 350 78.0
Hma1.2p1_0193F.1_g084100 Hydrangea macrophylla HOM05D004608 ORTHO05D006533 2.0e-143 513.1 478 61.9
Hma1.2p1_2995F.1_g331425 Hydrangea macrophylla HOM05D004608 ORTHO05D006533 2.0e-143 513.1 478 61.9
TAR626G0684 Trochodendron aralioides HOM05D004608 ORTHO05D006533 4.2e-141 505.4 315 81.9
BolC1t05127H Brassica oleracea HOM05D004608 ORTHO05D006533 1.4e-139 500.4 418 66.7
Duzib268G0270 Durio zibethinus HOM05D004608 ORTHO05D006533 8.2e-137 491.1 410 64.6
Zm00001eb205890 Zea mays HOM05D004608 ORTHO05D006533 1.2e-135 487.3 345 73.0
Pp3c4_20890 Physcomitrium patens HOM05D004608 ORTHO05D006533 1.9e-133 479.9 416 60.1
AagrBONN_evm.TU.Sc2ySwM_117.3155 Anthoceros agrestis HOM05D004608 ORTHO05D006533 2.2e-129 466.5 426 57.7
Nitab4.5_0001622g0040 Nicotiana tabacum HOM05D004608 ORTHO05D006533 1.0e-126 457.6 357 67.8
Mapoly0030s0110 Marchantia polymorpha HOM05D004608 ORTHO05D006533 2.6e-114 416.4 352 59.9
Oeu019694.2 Olea europaea HOM05D004608 ORTHO05D006533 4.4e-114 415.6 428 57.9
Sc03g0011700 Simmondsia chinensis HOM05D004608 ORTHO05D006533 1.4e-112 410.6 271 78.6
Oeu019695.1 Olea europaea HOM05D004608 ORTHO05D006533 2.5e-109 399.8 407 57.5
Ah.06g180960 Amaranthus hybridus HOM05D004608 ORTHO05D006533 9.1e-104 381.3 341 62.8
unitig_899.g15266 Utricularia gibba HOM05D004608 ORTHO05D006533 2.3e-99 366.7 324 64.5
Actinidia10581 Actinidia chinensis HOM05D004608 ORTHO05D006533 5.7e-98 362.1 359 58.8
CBR_g36902 Chara braunii HOM05D004608 ORTHO05D006533 9.2e-88 328.2 319 56.4
MCO11G772 Micromonas commoda HOM05D004608 ORTHO05D006533 7.3e-85 318.5 419 43.9
PRCOL_00000426 Prasinoderma coloniale HOM05D004608 ORTHO05D006533 7.3e-77 292.0 428 40.7
Pp3c17_4800 Physcomitrium patens HOM05D004608 ORTHO05D006533 2.6e-74 283.5 463 40.0
CDE05G0237 Ceratophyllum demersum HOM05D004608 ORTHO05D006533 9.9e-74 281.6 260 60.4
Cre10.g447300 Chlamydomonas reinhardtii HOM05D004608 ORTHO05D006533 1.4e-72 277.7 469 37.7
Aa31LG10G450 Aethionema arabicum HOM05D004608 ORTHO05D006533 1.1e-64 251.5 325 44.6
CDE05G1663 Ceratophyllum demersum HOM05D004608 ORTHO05D006533 1.3e-57 228.0 126 85.7
Aa31LG10G470 Aethionema arabicum HOM05D004608 ORTHO05D006533 8.4e-57 225.3 315 42.2
QL09p009005 Quercus lobata HOM05D000176 ORTHO05D000106 2.4e-51 207.2 145 73.1
Cfa022177 Carpinus fangiana HOM05D004608 ORTHO05D006533 1.1e-48 198.4 349 36.1
unitig_699.g19599 Utricularia gibba HOM05D004608 ORTHO05D006533 1.3e-46 191.4 335 34.9
CSS0026438 Camellia sinensis var. sinensis HOM05D004608 ORTHO05D006533 1.1e-43 181.8 104 82.7
CSS0036658 Camellia sinensis var. sinensis HOM05D004608 ORTHO05D006533 3.1e-43 180.3 104 81.7
AL5G25300 Arabidopsis lyrata HOM05D004608 ORTHO05D038587 1.5e-42 177.9 112 75.9
Ah.06g180950 Amaranthus hybridus HOM05D004608 ORTHO05D006533 2.8e-36 157.1 130 66.2
AUR62020809 Chenopodium quinoa HOM05D004608 ORTHO05D006533 5.9e-34 149.4 120 68.3
QL05p082689 Quercus lobata HOM05D004608 ORTHO05D006533 8.7e-30 135.6 97 72.2
AL3G34310 Arabidopsis lyrata HOM05D004608 ORTHO05D038587 2.0e-26 124.4 129 54.3
MD12G1084200 Malus domestica HOM05D004608 ORTHO05D249232 5.5e-24 116.3 65 87.7
CSS0047513 Camellia sinensis var. sinensis HOM05D004608 ORTHO05D006533 4.3e-21 106.7 58 81.0
unitig_899.g15265 Utricularia gibba HOM05D004608 ORTHO05D018951 6.9e-19 99.4 97 56.7
CDE05G3009 Ceratophyllum demersum HOM05D004608 ORTHO05D006533 6.5e-17 92.8 74 63.5
AUR62025404 Chenopodium quinoa HOM05D000200 ORTHO05D000262 6.5e-17 92.8 106 49.1
VMungo0954G0002 Vigna mungo HOM05D004608 ORTHO05D432787 4.2e-16 90.1 133 43.6
A05p36340 Brassica napus HOM05D004608 ORTHO05D006533 5.5e-16 89.7 65 69.2
Ca_07476_v3 Cicer arietinum L. HOM05D004608 ORTHO05D018951 5.1e-14 83.2 60 71.7
TAR629G0124 Trochodendron aralioides HOM05D002759 ORTHO05D021026 1.4e-11 75.1 47 76.6
CDE05G2773 Ceratophyllum demersum HOM05D004608 ORTHO05D018951 1.2e-10 72.0 59 66.1
CDE05G1534 Ceratophyllum demersum HOM05D004608 ORTHO05D018951 3.5e-10 70.5 52 63.5
CBR_g31527 Chara braunii HOM05D004608 ORTHO05D006533 1.9e-08 64.7 101 38.6
MD05G1213200 Malus domestica HOM05D004608 ORTHO05D006533 3.2e-08 63.9 65 58.5
HanXRQChr05g0144601 Helianthus annuus HOM05D004608 ORTHO05D018951 5.5e-08 63.2 36 83.3
HanXRQChr08g0229721 Helianthus annuus HOM05D004608 ORTHO05D018951 5.5e-08 63.2 36 83.3
HanXRQChr12g0367991 Helianthus annuus HOM05D004608 ORTHO05D018951 5.5e-08 63.2 36 83.3
MD05G1213500 Malus domestica HOM05D004608 ORTHO05D246297 5.5e-08 63.2 66 57.6
arahy.Tifrunner.gnm1.ann1.C1KQ7I Arachis hypogaea HOM05D004608 ORTHO05D006012 1.6e-07 61.6 63 54.0
Glyma.10G116100 Glycine max HOM05D004608 ORTHO05D021061 2.1e-07 61.2 61 50.8
QL09p040375 Quercus lobata HOM05D000176 ORTHO05D000106 1.0e-06 58.9 44 63.6
HanXRQChr16g0512931 Helianthus annuus HOM05D004608 ORTHO05D018951 1.4e-06 58.5 36 83.3
Sopen07g004930 Solanum pennellii HOM05D000004 ORTHO05D000002 4.0e-06 57.0 158 25.9
QL03p010974 Quercus lobata HOM05D003881 ORTHO05D004343 8.8e-06 55.8 54 55.6


User provided reference genes

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