Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_3g21000 Fragaria vesca HOM05D007566 ORTHO05D009505 2.4e-42 175.3 99 100.0
FAN11G3987 Fragaria x ananassa HOM05D007566 ORTHO05D009505 2.4e-42 175.3 99 100.0
FAN25G3649 Fragaria x ananassa HOM05D007566 ORTHO05D009505 2.7e-41 171.8 99 98.0
RcHm_v2.0_Chr5g0035981 Rosa chinensis HOM05D007566 ORTHO05D009505 8.0e-38 160.2 99 91.9
MD11G1237100 Malus domestica HOM05D007566 ORTHO05D009505 3.8e-32 141.4 99 81.8
Prupe.4G190300 Prunus persica HOM05D007566 ORTHO05D009505 6.6e-32 140.6 99 79.8
FAN21G0859 Fragaria x ananassa HOM05D007566 ORTHO05D009505 7.3e-31 137.1 99 82.8
Manes.15G083200 Manihot esculenta HOM05D007566 ORTHO05D009505 4.3e-23 111.3 99 64.6
Atru.chr2.2863 Acer truncatum HOM05D007566 ORTHO05D009505 9.5e-23 110.2 99 65.7
TWI39G1107 Tripterygium wilfordii HOM05D007566 ORTHO05D009505 9.5e-23 110.2 99 66.7
Duzib213G0757 Durio zibethinus HOM05D007566 ORTHO05D009505 1.6e-22 109.4 100 65.0
CANSAT11G1965 Cannabis sativa HOM05D007566 ORTHO05D009505 1.8e-21 105.9 100 65.0
CiPaw.11G176600 Carya illinoinensis HOM05D007566 ORTHO05D009505 3.1e-21 105.1 100 68.0
Sabra16G0268300 Salix brachista HOM05D007566 ORTHO05D009505 9.8e-20 100.1 100 64.0
Sabra16G0270600 Salix brachista HOM05D007566 ORTHO05D009505 9.8e-20 100.1 100 64.0
Ciclev10010014m.g Citrus clementina HOM05D007566 ORTHO05D009505 1.3e-19 99.8 100 63.0
MELO3C016554.2 Cucumis melo HOM05D007566 ORTHO05D009505 1.7e-19 99.4 100 61.0
Potri.001G406900 Populus trichocarpa HOM05D007566 ORTHO05D009505 3.7e-19 98.2 100 63.0
Thecc.07G071100 Theobroma cacao HOM05D007566 ORTHO05D009505 3.7e-19 98.2 101 64.4
Dinv08341 Davidia involucrata HOM05D007566 ORTHO05D009505 4.9e-19 97.8 98 63.3
COL.COLO4_09480 Corchorus olitorius HOM05D007566 ORTHO05D009505 6.4e-19 97.4 100 59.0
PGR083G0896 Punica granatum HOM05D007566 ORTHO05D009505 1.4e-18 96.3 100 62.0
Lalb_Chr25g0286741 Lupinus albus HOM05D007566 ORTHO05D009505 1.9e-18 95.9 101 58.4
CsaV3_3G005960 Cucumis sativus L. HOM05D007566 ORTHO05D009505 2.4e-18 95.5 100 61.0
Gorai.002G076000 Gossypium raimondii HOM05D007566 ORTHO05D009505 2.4e-18 95.5 100 61.0
DCAR_009984 Daucus carota HOM05D007566 ORTHO05D009505 3.2e-18 95.1 103 62.1
Phvul.005G086000 Phaseolus vulgaris HOM05D007566 ORTHO05D009505 3.2e-18 95.1 101 58.4
TAR627G0519 Trochodendron aralioides HOM05D007566 ORTHO05D009505 9.2e-18 93.6 100 58.0
Gohir.D01G055900 Gossypium hirsutum HOM05D007566 ORTHO05D009505 2.0e-17 92.4 100 60.0
Lj3g0013461 Lotus japonicus HOM05D007566 ORTHO05D009505 2.7e-17 92.0 100 60.0
GSVIVG01014436001 Vitis vinifera HOM05D007566 ORTHO05D009505 3.5e-17 91.7 103 57.3
Glyma.12G219500 Glycine max HOM05D007566 ORTHO05D009505 4.6e-17 91.3 102 57.8
Psat5g246560 Pisum sativum HOM05D007566 ORTHO05D009505 1.0e-16 90.1 101 57.4
Gohir.A01G068600 Gossypium hirsutum HOM05D007566 ORTHO05D009505 1.7e-16 89.4 100 59.0
TPR.G32847 Trifolium pratense HOM05D007566 ORTHO05D009505 2.3e-16 89.0 101 56.4
EL10Ac4g08058 Beta vulgaris HOM05D007566 ORTHO05D009505 3.9e-16 88.2 101 57.4
Glyma.13G281800 Glycine max HOM05D007566 ORTHO05D009505 3.9e-16 88.2 102 58.8
TAR371G0602 Trochodendron aralioides HOM05D007566 ORTHO05D009505 6.6e-16 87.4 102 56.9
Ah.04g165410 Amaranthus hybridus HOM05D007566 ORTHO05D009505 3.3e-15 85.1 100 58.0
Aa31LG5G10140 Aethionema arabicum HOM05D007566 ORTHO05D009505 4.3e-15 84.7 103 58.3
Cc05_g12690 Coffea canephora HOM05D007566 ORTHO05D009505 4.3e-15 84.7 102 58.8
THA.LOC104811846 Tarenaya hassleriana HOM05D007566 ORTHO05D009505 4.3e-15 84.7 101 56.4
Eucgr.F01078 Eucalyptus grandis HOM05D007566 ORTHO05D009505 5.6e-15 84.3 101 57.4
Nitab4.5_0000297g0110 Nicotiana tabacum HOM05D007566 ORTHO05D009505 9.5e-15 83.6 99 54.5
Oeu030434.1 Olea europaea HOM05D007566 ORTHO05D009505 9.5e-15 83.6 104 54.8
arahy.Tifrunner.gnm1.ann1.MQ63GR Arachis hypogaea HOM05D007566 ORTHO05D009505 1.2e-14 83.2 108 53.7
Medtr2g080990 Medicago truncatula HOM05D007566 ORTHO05D009505 2.8e-14 82.0 104 53.8
Rhsim06G0192900 Rhododendron simsii HOM05D007566 ORTHO05D009505 2.8e-14 82.0 104 59.6
ClCG10G006500 Citrullus lanatus HOM05D007566 ORTHO05D009505 3.6e-14 81.6 100 54.0
Hma1.2p1_3251F.1_g334500 Hydrangea macrophylla HOM05D007566 ORTHO05D009505 3.6e-14 81.6 106 58.5
Lsat_1_v5_gn_5_6820 Lactuca sativa HOM05D007566 ORTHO05D009505 3.6e-14 81.6 101 58.4
Sc16g0006770 Simmondsia chinensis HOM05D007566 ORTHO05D009505 3.6e-14 81.6 99 56.6
arahy.Tifrunner.gnm1.ann1.YDUQ9T Arachis hypogaea HOM05D007566 ORTHO05D009505 6.2e-14 80.9 108 52.8
PGSC0003DMG401019249 Solanum tuberosum HOM05D007566 ORTHO05D009505 1.8e-13 79.3 99 56.6
Actinidia39409 Actinidia chinensis HOM05D007566 ORTHO05D009505 3.1e-13 78.6 102 55.9
PSO541G1909 Papaver somniferum HOM05D007566 ORTHO05D009505 4.0e-13 78.2 101 51.5
Hund23375 Selenicereus undatus HOM05D007566 ORTHO05D009505 5.2e-13 77.8 103 51.5
Solyc07g063575.1 Solanum lycopersicum HOM05D007566 ORTHO05D009505 5.2e-13 77.8 99 56.6
Sopen07g031760 Solanum pennellii HOM05D007566 ORTHO05D009505 5.2e-13 77.8 99 56.6
Cpa.g.sc389.3 Carica papaya HOM05D007566 ORTHO05D009505 6.8e-13 77.4 100 57.0
ECA246G4377 Erigeron canadensis HOM05D007566 ORTHO05D009505 8.9e-13 77.0 100 54.0
HanXRQChr05g0151621 Helianthus annuus HOM05D007566 ORTHO05D009505 8.9e-13 77.0 102 55.9
BcaNung07200 Brassica carinata HOM05D007566 ORTHO05D009505 3.4e-12 75.1 105 55.2
C01p23510 Brassica napus HOM05D007566 ORTHO05D009505 3.4e-12 75.1 105 55.2
BolC1t02296H Brassica oleracea HOM05D007566 ORTHO05D009505 3.4e-12 75.1 105 55.2
A01p18560 Brassica napus HOM05D007566 ORTHO05D009505 4.4e-12 74.7 105 55.2
Migut.M01859 Erythranthe guttata HOM05D007566 ORTHO05D009505 5.8e-12 74.3 100 53.0
PSO675G4296 Papaver somniferum HOM05D007566 ORTHO05D009505 9.9e-12 73.6 101 49.5
BraA01t01804Z Brassica rapa HOM05D007566 ORTHO05D009505 1.3e-11 73.2 104 54.8
TWI38G1712 Tripterygium wilfordii HOM05D007566 ORTHO05D009505 1.3e-11 73.2 186 34.9
Aqoxy1G02746 Aquilegia oxysepala HOM05D007566 ORTHO05D009505 1.7e-11 72.8 99 54.5
Zm00001eb106900 Zea mays HOM05D007566 ORTHO05D009505 1.7e-11 72.8 112 54.5
SGA_v2.0_scaffold73G24317 Striga asiatica HOM05D007566 ORTHO05D009505 2.9e-11 72.0 120 50.0
Sp7g25310 Schrenkiella parvula HOM05D007566 ORTHO05D009505 3.7e-11 71.6 103 52.4
AUR62015600 Chenopodium quinoa HOM05D007566 ORTHO05D009505 2.4e-10 68.9 103 49.5
Nitab4.5_0008686g0030 Nicotiana tabacum HOM05D007566 ORTHO05D009505 5.4e-10 67.8 99 48.5
BcaNung03032 Brassica carinata HOM05D007566 ORTHO05D009505 3.5e-09 65.1 104 51.0
CDE05G3101 Ceratophyllum demersum HOM05D007566 ORTHO05D009505 3.5e-09 65.1 101 48.5
unitig_0.g2051 Utricularia gibba HOM05D007566 ORTHO05D009505 4.6e-09 64.7 107 47.7
vmacro11813 Vaccinium macrocarpon HOM05D007566 ORTHO05D009505 3.9e-08 61.6 54 66.7
CARHR235050 Cardamine hirsuta HOM05D007566 ORTHO05D009505 1.1e-07 60.1 108 49.1
GSVIVG01014434001 Vitis vinifera HOM05D007566 ORTHO05D009505 1.5e-07 59.7 83 49.4
Os07g0562900 Oryza sativa ssp. japonica HOM05D007566 ORTHO05D009505 2.5e-07 58.9 112 45.5
Nn1g03914 Nelumbo nucifera HOM05D007566 ORTHO05D009505 3.3e-07 58.5 100 44.0
VMungo0647G1906 Vigna mungo HOM05D007566 ORTHO05D009505 5.6e-07 57.8 53 62.3
Thhalv10026547m.g Eutrema salsugineum HOM05D007566 ORTHO05D009505 7.3e-07 57.4 136 41.9
Solyc10g047330.1 Solanum lycopersicum HOM05D007566 ORTHO05D009505 2.8e-06 55.5 99 47.5
DCAR_022487 Daucus carota HOM05D007566 ORTHO05D009505 3.6e-06 55.1 71 52.1
MSTRG.15205 Avicennia marina HOM05D007566 ORTHO05D009505 4.7e-06 54.7 104 48.1


User provided reference genes

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