Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_3g20863 Fragaria vesca HOM05D003207 ORTHO05D003615 8.7e-41 169.9 85 100.0
FAN11G0582 Fragaria x ananassa HOM05D003207 ORTHO05D003615 8.7e-41 169.9 85 100.0
RcHm_v2.0_Chr5g0035221 Rosa chinensis HOM05D003207 ORTHO05D003615 2.0e-21 105.5 99 58.6
Prupe.4G189100 Prunus persica HOM05D003207 ORTHO05D003615 8.2e-15 83.6 93 54.8
Atru.chr2.2830 Acer truncatum HOM05D003207 ORTHO05D003615 4.1e-14 81.3 99 48.5
Dinv08336 Davidia involucrata HOM05D003207 ORTHO05D003615 5.3e-14 80.9 94 53.2
TWI39G0955 Tripterygium wilfordii HOM05D003207 ORTHO05D003615 9.0e-14 80.1 92 51.1
Migut.M00873 Erythranthe guttata HOM05D003207 ORTHO05D003615 5.9e-13 77.4 100 50.0
Manes.03G116100 Manihot esculenta HOM05D003207 ORTHO05D003615 5.9e-13 77.4 92 51.1
Nn1g06736 Nelumbo nucifera HOM05D003207 ORTHO05D003615 1.0e-12 76.6 101 46.5
TAR597G0001 Trochodendron aralioides HOM05D003207 ORTHO05D003615 1.0e-12 76.6 98 49.0
TAR624G0491 Trochodendron aralioides HOM05D003207 ORTHO05D003615 1.0e-12 76.6 98 49.0
Dinv15477 Davidia involucrata HOM05D003207 ORTHO05D003615 1.7e-12 75.9 98 52.0
Manes.15G083600 Manihot esculenta HOM05D003207 ORTHO05D003615 1.7e-12 75.9 93 49.5
QL93p2023_0086 Quercus lobata HOM05D003207 ORTHO05D003615 1.7e-12 75.9 98 48.0
MD11G1238000 Malus domestica HOM05D003207 ORTHO05D003615 3.8e-12 74.7 107 44.9
Rhsim04G0018100 Rhododendron simsii HOM05D003207 ORTHO05D003615 3.8e-12 74.7 106 46.2
TAR629G1513 Trochodendron aralioides HOM05D003207 ORTHO05D003615 6.5e-12 73.9 99 48.5
Nn1g03922 Nelumbo nucifera HOM05D003207 ORTHO05D003615 8.5e-12 73.6 93 50.5
QL08p018701 Quercus lobata HOM05D003207 ORTHO05D003615 8.5e-12 73.6 98 46.9
Thecc.07G072700 Theobroma cacao HOM05D003207 ORTHO05D003615 8.5e-12 73.6 102 46.1
Ca_01808_v3 Cicer arietinum L. HOM05D003207 ORTHO05D003615 3.2e-11 71.6 92 50.0
Ca_29613_v3 Cicer arietinum L. HOM05D003207 ORTHO05D003615 3.2e-11 71.6 92 50.0
Sopen12g006900 Solanum pennellii HOM05D003207 ORTHO05D003615 5.5e-11 70.9 99 44.4
PGSC0003DMG400019250 Solanum tuberosum HOM05D003207 ORTHO05D003615 5.5e-11 70.9 99 46.5
Haze_13097 Corylus avellana HOM05D003207 ORTHO05D003615 7.2e-11 70.5 87 50.6
Sopen07g031720 Solanum pennellii HOM05D003207 ORTHO05D003615 7.2e-11 70.5 94 47.9
Actinidia25642 Actinidia chinensis HOM05D003207 ORTHO05D003615 1.6e-10 69.3 98 44.9
COL.COLO4_09470 Corchorus olitorius HOM05D003207 ORTHO05D003615 1.6e-10 69.3 100 44.0
Solyc07g063540.3 Solanum lycopersicum HOM05D003207 ORTHO05D003615 4.6e-10 67.8 94 46.8
PGSC0003DMG400008567 Solanum tuberosum HOM05D003207 ORTHO05D003615 4.6e-10 67.8 99 45.5
Ah.01g005240 Amaranthus hybridus HOM05D003207 ORTHO05D003615 6.1e-10 67.4 87 50.6
Peaxi162Scf00000g00507 Petunia axillaris HOM05D003207 ORTHO05D003615 6.1e-10 67.4 98 44.9
SGA_v2.0_scaffold34G13717 Striga asiatica HOM05D003207 ORTHO05D003615 6.1e-10 67.4 94 47.9
GSVIVG01014423001 Vitis vinifera HOM05D003207 ORTHO05D003615 6.1e-10 67.4 99 47.5
Aqoxy1G02766 Aquilegia oxysepala HOM05D003207 ORTHO05D003615 1.0e-09 66.6 89 42.7
Lsat_1_v5_gn_3_39520 Lactuca sativa HOM05D003207 ORTHO05D003615 1.0e-09 66.6 91 48.4
MSTRG.6851 Avicennia marina HOM05D003207 ORTHO05D003615 1.4e-09 66.2 100 42.0
Cpa.g.sc80.107 Carica papaya HOM05D003207 ORTHO05D003615 1.4e-09 66.2 101 45.5
Ciclev10009993m.g Citrus clementina HOM05D003207 ORTHO05D003615 1.4e-09 66.2 94 43.6
CANSAT64G1365 Cannabis sativa HOM05D003207 ORTHO05D003615 2.3e-09 65.5 87 47.1
GSVIVG01030577001 Vitis vinifera HOM05D003207 ORTHO05D003615 2.3e-09 65.5 88 50.0
Oeu005435.1 Olea europaea HOM05D003207 ORTHO05D003615 3.0e-09 65.1 120 38.3
Solyc12g013550.2 Solanum lycopersicum HOM05D003207 ORTHO05D003615 3.0e-09 65.1 99 42.4
Sabra19G0115200 Salix brachista HOM05D003207 ORTHO05D003615 3.9e-09 64.7 87 47.1
Sabra19G0138200 Salix brachista HOM05D003207 ORTHO05D003615 3.9e-09 64.7 87 47.1
Potri.019G109100 Populus trichocarpa HOM05D003207 ORTHO05D003615 5.1e-09 64.3 93 46.2
HanXRQChr15g0480351 Helianthus annuus HOM05D003207 ORTHO05D003615 6.7e-09 63.9 87 47.1
Manes.13G151100 Manihot esculenta HOM05D003207 ORTHO05D003615 6.7e-09 63.9 87 47.1
PSO421G0320 Papaver somniferum HOM05D003207 ORTHO05D003615 6.7e-09 63.9 97 44.3
Prupe.3G232400 Prunus persica HOM05D003207 ORTHO05D003615 6.7e-09 63.9 87 46.0
CiPaw.11G175600 Carya illinoinensis HOM05D003207 ORTHO05D003615 8.8e-09 63.5 103 45.6
Atru.chr6.3059 Acer truncatum HOM05D003207 ORTHO05D003615 1.1e-08 63.2 87 47.1
Eucgr.F01083 Eucalyptus grandis HOM05D003207 ORTHO05D003615 1.5e-08 62.8 98 45.9
Hma1.2p1_0565F.1_g179410 Hydrangea macrophylla HOM05D003207 ORTHO05D003615 1.5e-08 62.8 95 45.3
TPR.G32877 Trifolium pratense HOM05D003207 ORTHO05D003615 1.5e-08 62.8 92 44.6
HanXRQChr17g0542051 Helianthus annuus HOM05D003207 ORTHO05D003615 1.9e-08 62.4 95 43.2
Nitab4.5_0002565g0010 Nicotiana tabacum HOM05D003207 ORTHO05D003615 1.9e-08 62.4 111 39.6
Potri.013G146000 Populus trichocarpa HOM05D003207 ORTHO05D003615 1.9e-08 62.4 98 44.9
CSS0019981 Camellia sinensis var. sinensis HOM05D003207 ORTHO05D003615 2.5e-08 62.0 93 43.0
Medtr2g080270 Medicago truncatula HOM05D003207 ORTHO05D003615 2.5e-08 62.0 92 44.6
CiPaw.03G170500 Carya illinoinensis HOM05D003207 ORTHO05D003615 3.3e-08 61.6 87 46.0
Nitab4.5_0000297g0090 Nicotiana tabacum HOM05D003207 ORTHO05D003615 3.3e-08 61.6 90 45.6
RcHm_v2.0_Chr2g0162011 Rosa chinensis HOM05D003207 ORTHO05D003615 3.3e-08 61.6 87 47.1
arahy.Tifrunner.gnm1.ann1.1GCN3K Arachis hypogaea HOM05D003207 ORTHO05D003615 4.3e-08 61.2 101 43.6
arahy.Tifrunner.gnm1.ann1.CI4P3J Arachis hypogaea HOM05D003207 ORTHO05D003615 4.3e-08 61.2 101 43.6
Haze_09519 Corylus avellana HOM05D003207 ORTHO05D003615 4.3e-08 61.2 43 69.8
PSO675G5140 Papaver somniferum HOM05D003207 ORTHO05D003615 4.3e-08 61.2 100 44.0
CAN.G162.100 Capsicum annuum HOM05D003207 ORTHO05D003615 7.4e-08 60.5 94 43.6
MBI18_g11114_MAGBIO Magnolia biondii HOM05D003207 ORTHO05D003615 7.4e-08 60.5 98 43.9
SGA_v2.0_scaffold159G37630 Striga asiatica HOM05D003207 ORTHO05D003615 7.4e-08 60.5 86 44.2
Lsat_1_v5_gn_8_131761 Lactuca sativa HOM05D003207 ORTHO05D003615 9.7e-08 60.1 86 45.3
FAN05G4492 Fragaria x ananassa HOM05D003207 ORTHO05D003615 1.3e-07 59.7 87 44.8
FAN14G3755 Fragaria x ananassa HOM05D003207 ORTHO05D003615 1.7e-07 59.3 87 44.8
Lsat_1_v5_gn_4_70380 Lactuca sativa HOM05D003207 ORTHO05D003615 1.7e-07 59.3 85 45.9
Sed0012891 Sechium edule HOM05D003207 ORTHO05D003615 1.7e-07 59.3 89 47.2
Nitab4.5_0004216g0050 Nicotiana tabacum HOM05D003207 ORTHO05D003615 2.2e-07 58.9 95 44.2
FvH4_6g44830 Fragaria vesca HOM05D003207 ORTHO05D003615 2.8e-07 58.5 87 43.7
Lalb_Chr20g0109981 Lupinus albus HOM05D003207 ORTHO05D003615 2.8e-07 58.5 105 41.0
unitig_747.g21564 Utricularia gibba HOM05D003207 ORTHO05D003615 2.8e-07 58.5 108 40.7
CSS0043148 Camellia sinensis var. sinensis HOM05D003207 ORTHO05D003615 3.7e-07 58.2 83 47.0
MD17G1082800 Malus domestica HOM05D003207 ORTHO05D003615 3.7e-07 58.2 95 40.0
arahy.Tifrunner.gnm1.ann1.JDAI9R Arachis hypogaea HOM05D003207 ORTHO05D003615 4.8e-07 57.8 86 43.0
arahy.Tifrunner.gnm1.ann1.L7CY27 Arachis hypogaea HOM05D003207 ORTHO05D003615 4.8e-07 57.8 86 43.0
CSS0004412 Camellia sinensis var. sinensis HOM05D003207 ORTHO05D003615 4.8e-07 57.8 90 45.6
CSS0012114 Camellia sinensis var. sinensis HOM05D003207 ORTHO05D003615 4.8e-07 57.8 90 45.6
Duzib248G0651 Durio zibethinus HOM05D003207 ORTHO05D003615 4.8e-07 57.8 92 41.3
FAN02G3322 Fragaria x ananassa HOM05D003207 ORTHO05D003615 4.8e-07 57.8 87 43.7
Nitab4.5_0001090g0040 Nicotiana tabacum HOM05D003207 ORTHO05D003615 4.8e-07 57.8 94 44.7
Lalb_Chr25g0286681 Lupinus albus HOM05D003207 ORTHO05D003615 6.3e-07 57.4 92 42.4
EL10Ac9g20680 Beta vulgaris HOM05D003207 ORTHO05D003615 8.2e-07 57.0 87 49.4
Nitab4.5_0005244g0020 Nicotiana tabacum HOM05D003207 ORTHO05D003615 8.2e-07 57.0 95 44.2
PSO210G2445 Papaver somniferum HOM05D003207 ORTHO05D003615 8.2e-07 57.0 81 44.4
PSO210G7399 Papaver somniferum HOM05D003207 ORTHO05D003615 8.2e-07 57.0 81 44.4
Thecc.02G172700 Theobroma cacao HOM05D003207 ORTHO05D003615 8.2e-07 57.0 92 42.4
ClCG02G017380 Citrullus lanatus HOM05D003207 ORTHO05D003615 1.1e-06 56.6 87 43.7
FAN09G2723 Fragaria x ananassa HOM05D003207 ORTHO05D003615 1.1e-06 56.6 87 44.8
PGSC0003DMG400013747 Solanum tuberosum HOM05D003207 ORTHO05D003615 1.1e-06 56.6 94 43.6
AUR62037379 Chenopodium quinoa HOM05D003207 ORTHO05D003615 1.4e-06 56.2 86 45.3
AUR62038939 Chenopodium quinoa HOM05D003207 ORTHO05D003615 1.4e-06 56.2 86 45.3
TWI18G0519 Tripterygium wilfordii HOM05D003207 ORTHO05D003615 1.4e-06 56.2 86 43.0
CDE02G3935 Ceratophyllum demersum HOM05D003207 ORTHO05D003615 1.8e-06 55.8 92 39.1
COL.COLO4_13688 Corchorus olitorius HOM05D003207 ORTHO05D003615 1.8e-06 55.8 92 41.3
Eucgr.K00930 Eucalyptus grandis HOM05D003207 ORTHO05D003615 1.8e-06 55.8 87 46.0
Aqoxy4G01378 Aquilegia oxysepala HOM05D003207 ORTHO05D003615 2.4e-06 55.5 94 40.4
Nitab4.5_0003018g0030 Nicotiana tabacum HOM05D003207 ORTHO05D003615 2.4e-06 55.5 90 45.6
Rhsim04G0065800 Rhododendron simsii HOM05D003207 ORTHO05D003615 2.4e-06 55.5 111 40.5
Sed0003278 Sechium edule HOM05D003207 ORTHO05D003615 2.4e-06 55.5 87 42.5
MELO3C013527.2 Cucumis melo HOM05D003207 ORTHO05D003615 3.1e-06 55.1 96 37.5
CsaV3_3G006010 Cucumis sativus L. HOM05D003207 ORTHO05D003615 3.1e-06 55.1 93 39.8
QL10p048414 Quercus lobata HOM05D003207 ORTHO05D003615 3.1e-06 55.1 97 40.2
Ah.01g014410 Amaranthus hybridus HOM05D000001 ORTHO05D000003 4.1e-06 54.7 95 44.2
Ciclev10017293m.g Citrus clementina HOM05D003207 ORTHO05D003615 4.1e-06 54.7 89 44.9
CDE05G0499 Ceratophyllum demersum HOM05D003207 ORTHO05D003615 5.3e-06 54.3 92 38.0
Gohir.A03G159800 Gossypium hirsutum HOM05D003207 ORTHO05D003615 5.3e-06 54.3 92 40.2
MD09G1092800 Malus domestica HOM05D003207 ORTHO05D003615 5.3e-06 54.3 89 39.3
AUR62029321 Chenopodium quinoa HOM05D003207 ORTHO05D003615 6.9e-06 53.9 95 42.1
EL10Ac4g08078 Beta vulgaris HOM05D003207 ORTHO05D003615 9.1e-06 53.5 100 40.0
Peaxi162Scf00485g00410 Petunia axillaris HOM05D003207 ORTHO05D003615 9.1e-06 53.5 94 44.7


User provided reference genes

Program Settings