Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_3g06660 Fragaria vesca HOM05D006199 ORTHO05D006558 7.2e-95 350.5 170 100.0
FAN11G3400 Fragaria x ananassa HOM05D006199 ORTHO05D006558 5.1e-93 344.4 170 98.8
FvH4_2g01260 Fragaria vesca HOM05D006199 ORTHO05D006558 1.3e-88 329.7 166 95.2
FAN24G2717 Fragaria x ananassa HOM05D006199 ORTHO05D006558 2.5e-87 325.5 166 94.6
FAN20G1063 Fragaria x ananassa HOM05D006199 ORTHO05D006558 2.1e-86 322.4 166 94.6
RcHm_v2.0_Chr6g0251921 Rosa chinensis HOM05D006199 ORTHO05D006558 1.7e-83 312.8 166 91.0
FAN27G0272 Fragaria x ananassa HOM05D006199 ORTHO05D006558 1.1e-82 310.1 166 91.0
Prupe.8G164900 Prunus persica HOM05D006199 ORTHO05D006558 2.9e-72 275.4 168 78.0
MD10G1095100 Malus domestica HOM05D006199 ORTHO05D006558 2.0e-68 262.7 166 72.9
GSVIVG01024030001 Vitis vinifera HOM05D006199 ORTHO05D006558 1.1e-66 256.9 166 71.1
QL11p050170 Quercus lobata HOM05D006199 ORTHO05D006558 1.8e-66 256.1 166 72.3
Dinv41943 Davidia involucrata HOM05D006199 ORTHO05D006558 2.0e-65 252.7 166 69.9
Manes.04G075600 Manihot esculenta HOM05D006199 ORTHO05D006558 4.5e-65 251.5 167 67.1
Thecc.02G060900 Theobroma cacao HOM05D006199 ORTHO05D006558 7.7e-65 250.8 166 68.7
CANSAT25G2535 Cannabis sativa HOM05D006199 ORTHO05D006558 2.2e-64 249.2 166 70.5
Potri.009G134500 Populus trichocarpa HOM05D006199 ORTHO05D006558 2.2e-64 249.2 167 67.7
Duzib132G0247 Durio zibethinus HOM05D006199 ORTHO05D006558 2.9e-64 248.8 166 68.1
Cfa005236 Carpinus fangiana HOM05D006199 ORTHO05D006558 1.5e-63 246.5 166 69.3
Ca_15302_v3 Cicer arietinum L. HOM05D006199 ORTHO05D006558 1.9e-63 246.1 168 70.8
Gohir.D01G159100 Gossypium hirsutum HOM05D006199 ORTHO05D006558 3.2e-63 245.4 166 66.3
TPR.G38477 Trifolium pratense HOM05D006199 ORTHO05D006558 3.2e-63 245.4 168 69.6
TWI75G1548 Tripterygium wilfordii HOM05D006199 ORTHO05D006558 4.2e-63 245.0 167 65.9
TAR628G1195 Trochodendron aralioides HOM05D006199 ORTHO05D006558 4.2e-63 245.0 166 68.1
Gorai.002G197400 Gossypium raimondii HOM05D006199 ORTHO05D006558 7.2e-63 244.2 166 65.7
Lj1g0009253 Lotus japonicus HOM05D006199 ORTHO05D006558 7.2e-63 244.2 169 70.4
CiPaw.05G081500 Carya illinoinensis HOM05D006199 ORTHO05D006558 9.5e-63 243.8 166 68.7
Sabra09G0104300 Salix brachista HOM05D006199 ORTHO05D006558 1.2e-62 243.4 167 65.9
Nitab4.5_0005853g0010 Nicotiana tabacum HOM05D006199 ORTHO05D006558 1.6e-62 243.0 167 67.7
Phvul.009G119500 Phaseolus vulgaris HOM05D006199 ORTHO05D006558 2.1e-62 242.7 168 67.9
Sc18g0006460 Simmondsia chinensis HOM05D006199 ORTHO05D006558 2.1e-62 242.7 166 65.7
Lj5A179T83 Lonicera japonica HOM05D006199 ORTHO05D006558 4.7e-62 241.5 168 66.7
Solyc01g111550.3 Solanum lycopersicum HOM05D006199 ORTHO05D006558 4.7e-62 241.5 167 65.9
Sopen01g053590 Solanum pennellii HOM05D006199 ORTHO05D006558 4.7e-62 241.5 167 65.9
PGSC0003DMG400006190 Solanum tuberosum HOM05D006199 ORTHO05D006558 1.4e-61 240.0 166 65.7
Gohir.A01G168100 Gossypium hirsutum HOM05D006199 ORTHO05D006558 1.8e-61 239.6 166 65.7
Glyma.04G003800 Glycine max HOM05D006199 ORTHO05D006558 3.0e-61 238.8 168 68.5
Medtr3g117880 Medicago truncatula HOM05D006199 ORTHO05D006558 3.0e-61 238.8 168 67.3
VMungo1309G0102 Vigna mungo HOM05D006199 ORTHO05D006558 8.8e-61 237.3 170 66.5
Aqoxy6G02177 Aquilegia oxysepala HOM05D006199 ORTHO05D006558 2.0e-60 236.1 166 65.7
CAN.G588.74 Capsicum annuum HOM05D006199 ORTHO05D006558 4.4e-60 235.0 167 65.3
Eucgr.I01413 Eucalyptus grandis HOM05D006199 ORTHO05D006558 1.3e-59 233.4 166 66.3
Nn5g30772 Nelumbo nucifera HOM05D006199 ORTHO05D006558 1.3e-59 233.4 166 64.5
EL10Ac9g21386 Beta vulgaris HOM05D006199 ORTHO05D006558 2.8e-59 232.3 166 63.3
MBI08_g14630_MAGBIO Magnolia biondii HOM05D006199 ORTHO05D006558 3.7e-59 231.9 165 64.8
arahy.Tifrunner.gnm1.ann1.H9ZTXG Arachis hypogaea HOM05D006199 ORTHO05D006558 4.9e-59 231.5 168 67.3
Cc02_g16220 Coffea canephora HOM05D006199 ORTHO05D006558 6.3e-59 231.1 166 64.5
Peaxi162Scf00362g00651 Petunia axillaris HOM05D006199 ORTHO05D006558 6.3e-59 231.1 180 60.6
ClCG02G011890 Citrullus lanatus HOM05D006199 ORTHO05D006558 4.1e-58 228.4 168 66.1
Nitab4.5_0006645g0060 Nicotiana tabacum HOM05D006199 ORTHO05D006558 5.4e-58 228.0 196 59.2
Rhsim11G0191800 Rhododendron simsii HOM05D006199 ORTHO05D006558 5.4e-58 228.0 166 63.3
Sed0003263 Sechium edule HOM05D006199 ORTHO05D006558 1.6e-57 226.5 168 64.3
PGR142G1980 Punica granatum HOM05D006199 ORTHO05D006558 4.5e-57 224.9 167 61.7
Atru.chr5.3311 Acer truncatum HOM05D006199 ORTHO05D006558 5.9e-57 224.6 167 62.9
CsaV3_2G016060 Cucumis sativus L. HOM05D006199 ORTHO05D006558 1.3e-56 223.4 168 66.1
Ah.01g022950 Amaranthus hybridus HOM05D006199 ORTHO05D006558 1.7e-56 223.0 166 60.8
PSO675G4200 Papaver somniferum HOM05D006199 ORTHO05D006558 5.0e-56 221.5 166 63.9
ATR0078G008 Amborella trichopoda HOM05D006199 ORTHO05D006558 1.5e-55 219.9 165 57.0
AUR62013038 Chenopodium quinoa HOM05D006199 ORTHO05D006558 1.9e-55 219.5 166 62.0
MELO3C020815.2 Cucumis melo HOM05D006199 ORTHO05D006558 4.3e-55 218.4 168 65.5
FvH4_5g37420 Fragaria vesca HOM05D006199 ORTHO05D006558 1.6e-54 216.5 131 84.7
PSO541G4917 Papaver somniferum HOM05D006199 ORTHO05D006558 2.3e-53 212.6 166 62.7
SHI05731 Sapria himalayana HOM05D006199 ORTHO05D006558 5.2e-53 211.5 167 56.3
MSTRG.19995 Avicennia marina HOM05D006199 ORTHO05D006558 1.5e-52 209.9 167 56.9
CARHR111860 Cardamine hirsuta HOM05D006199 ORTHO05D006558 4.9e-51 204.9 167 58.7
Lalb_Chr23g0265011 Lupinus albus HOM05D006199 ORTHO05D006558 8.3e-51 204.1 169 58.6
SalBow1G2578 Salvia bowleyana HOM05D006199 ORTHO05D006558 8.3e-51 204.1 167 56.9
AL4G10110 Arabidopsis lyrata HOM05D006199 ORTHO05D006558 1.4e-50 203.4 167 58.1
Sp4g00170 Schrenkiella parvula HOM05D006199 ORTHO05D006558 2.4e-50 202.6 167 57.5
Migut.B00085 Erythranthe guttata HOM05D006199 ORTHO05D006558 5.4e-50 201.4 166 56.0
AT2G20980 Arabidopsis thaliana HOM05D006199 ORTHO05D006558 1.2e-49 200.3 167 57.5
Ciclev10028644m.g Citrus clementina HOM05D006199 ORTHO05D006558 1.6e-49 199.9 167 59.3
THA.LOC104807811 Tarenaya hassleriana HOM05D006199 ORTHO05D006558 3.5e-49 198.7 167 58.1
Haze_02147 Corylus avellana HOM05D006199 ORTHO05D006558 7.8e-49 197.6 195 52.8
Carub.0004s0005 Capsella rubella HOM05D006199 ORTHO05D006558 1.0e-48 197.2 167 56.3
Thhalv10000193m.g Eutrema salsugineum HOM05D006199 ORTHO05D006558 3.0e-48 195.7 167 56.3
CiPaw.06G122500 Carya illinoinensis HOM05D006199 ORTHO05D006558 3.9e-48 195.3 166 59.0
A03p27410 Brassica napus HOM05D006199 ORTHO05D006558 9.5e-47 190.7 168 56.0
BolC3t15631H Brassica oleracea HOM05D006199 ORTHO05D006558 1.6e-46 189.9 168 55.4
BcaC01g04861 Brassica carinata HOM05D006199 ORTHO05D006558 2.1e-46 189.5 168 55.4
C03p33040 Brassica napus HOM05D006199 ORTHO05D006558 2.1e-46 189.5 168 55.4
Os09g0539400 Oryza sativa ssp. japonica HOM05D006199 ORTHO05D006558 3.6e-46 188.7 166 55.4
BraA03t11952Z Brassica rapa HOM05D006199 ORTHO05D006558 4.7e-46 188.3 168 54.8
Hund00025 Selenicereus undatus HOM05D006199 ORTHO05D006558 8.0e-46 187.6 166 54.8
Actinidia00620 Actinidia chinensis HOM05D006199 ORTHO05D006558 1.4e-45 186.8 167 57.5
arahy.Tifrunner.gnm1.ann1.WS10KT Arachis hypogaea HOM05D006199 ORTHO05D006558 1.8e-45 186.4 170 57.1
Psat5g002720 Pisum sativum HOM05D006199 ORTHO05D006558 1.2e-44 183.7 140 64.3
Zm00001eb331950 Zea mays HOM05D006199 ORTHO05D006558 1.5e-44 183.3 165 53.3
HPP92_008341 Vanilla planifolia HOM05D006199 ORTHO05D006558 2.0e-44 183.0 155 57.4
BcaB07g29803 Brassica carinata HOM05D006199 ORTHO05D006558 5.8e-44 181.4 174 51.1
DCAR_022808 Daucus carota HOM05D006199 ORTHO05D006558 9.8e-44 180.6 165 54.5
Lsat_1_v5_gn_4_71580 Lactuca sativa HOM05D006199 ORTHO05D006558 2.2e-43 179.5 169 52.1
Aa31LG7G15660 Aethionema arabicum HOM05D006199 ORTHO05D006558 2.9e-43 179.1 167 53.3
ECA234G0878 Erigeron canadensis HOM05D006199 ORTHO05D006558 4.9e-43 178.3 169 53.8
vmacro02274 Vaccinium macrocarpon HOM05D006199 ORTHO05D006558 8.6e-40 167.5 236 42.8
FvH4_1g02330 Fragaria vesca HOM05D006199 ORTHO05D006558 1.5e-39 166.8 81 95.1
FAN14G5753 Fragaria x ananassa HOM05D006199 ORTHO05D006558 9.5e-39 164.1 81 93.8
Oeu050364.1 Olea europaea HOM05D006199 ORTHO05D006558 4.7e-38 161.8 102 69.6
AUR62010046 Chenopodium quinoa HOM05D006199 ORTHO05D006558 1.2e-36 157.1 166 50.6
COL.COLO4_17328 Corchorus olitorius HOM05D006199 ORTHO05D006558 2.0e-36 156.4 166 48.8
HanXRQChr10g0300911 Helianthus annuus HOM05D006199 ORTHO05D006558 2.7e-33 146.0 169 45.6
CSS0017687 Camellia sinensis var. sinensis HOM05D006199 ORTHO05D006558 3.9e-32 142.1 93 69.9
RcHm_v2.0_Chr5g0048301 Rosa chinensis HOM05D006199 ORTHO05D006558 6.6e-32 141.4 168 47.6
Cpa.g.sc37.143 Carica papaya HOM05D006199 ORTHO05D006558 5.6e-31 138.3 94 62.8
Pp3c15_24300 Physcomitrium patens HOM05D006199 ORTHO05D006558 2.8e-30 136.0 167 41.3
Actinidia20510 Actinidia chinensis HOM05D006199 ORTHO05D006558 3.1e-29 132.5 96 64.6
Mapoly0068s0001 Marchantia polymorpha HOM05D006199 ORTHO05D006558 2.6e-28 129.4 167 40.1
AagrBONN_evm.TU.Sc2ySwM_362.2501 Anthoceros agrestis HOM05D006199 ORTHO05D006558 4.1e-26 122.1 121 43.8
BcaB01g02961 Brassica carinata HOM05D006199 ORTHO05D006558 7.8e-25 117.9 124 47.6
CSS0031508 Camellia sinensis var. sinensis HOM05D006199 ORTHO05D006558 6.6e-24 114.8 75 72.0
unitig_37.g12834 Utricularia gibba HOM05D006199 ORTHO05D006558 5.8e-20 101.7 168 36.3
FAN24G0607 Fragaria x ananassa HOM05D006199 ORTHO05D006558 1.4e-13 80.5 38 92.1
CBR_g870 Chara braunii HOM05D006199 ORTHO05D006558 4.0e-13 79.0 108 38.9
MCO03G518 Micromonas commoda HOM05D006199 ORTHO05D006558 1.5e-12 77.0 133 33.1
FvH4_2g23470 Fragaria vesca HOM05D006199 ORTHO05D006558 2.0e-12 76.6 34 97.1
SGA_v2.0_scaffold58G20372 Striga asiatica HOM05D006199 ORTHO05D006558 7.6e-12 74.7 61 59.0
HanXRQChr15g0479941 Helianthus annuus HOM05D006199 ORTHO05D006558 3.8e-11 72.4 74 47.3
FAN14G4166 Fragaria x ananassa HOM05D006199 ORTHO05D006558 6.4e-11 71.6 34 91.2
Duzib248G0391 Durio zibethinus HOM05D006199 ORTHO05D006558 1.2e-09 67.4 49 63.3
Cre07.g351400 Chlamydomonas reinhardtii HOM05D006199 ORTHO05D006558 2.3e-08 63.2 128 28.1
AUR62027127 Chenopodium quinoa HOM05D006199 ORTHO05D006558 2.1e-06 56.6 49 51.0


User provided reference genes

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