Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_3g04930 Fragaria vesca HOM05D005665 ORTHO05D007230 3.3e-197 691.4 329 100.0
FAN11G2254 Fragaria x ananassa HOM05D005665 ORTHO05D007230 3.3e-197 691.4 329 100.0
FAN21G3875 Fragaria x ananassa HOM05D005665 ORTHO05D007230 3.4e-194 681.4 329 98.8
FAN25G3768 Fragaria x ananassa HOM05D005665 ORTHO05D007230 1.0e-193 679.9 329 98.8
FAN16G3723 Fragaria x ananassa HOM05D005665 ORTHO05D007230 3.2e-192 674.9 329 98.2
RcHm_v2.0_Chr5g0008091 Rosa chinensis HOM05D005665 ORTHO05D007230 6.7e-190 667.2 329 96.0
Prupe.4G044600 Prunus persica HOM05D005665 ORTHO05D007230 1.2e-183 646.4 333 92.2
MD10G1295900 Malus domestica HOM05D005665 ORTHO05D007230 2.0e-181 639.0 329 91.2
Thecc.06G190100 Theobroma cacao HOM05D005665 ORTHO05D007230 5.7e-173 610.9 326 87.4
Cfa000422 Carpinus fangiana HOM05D005665 ORTHO05D007230 8.2e-172 607.1 329 87.8
CiPaw.10G047200 Carya illinoinensis HOM05D005665 ORTHO05D007230 9.1e-171 603.6 326 87.1
Dinv07542 Davidia involucrata HOM05D005665 ORTHO05D007230 4.5e-170 601.3 317 88.3
THA.LOC104806290 Tarenaya hassleriana HOM05D005665 ORTHO05D007230 7.7e-170 600.5 332 85.2
QL05p039803 Quercus lobata HOM05D005665 ORTHO05D007230 1.0e-169 600.1 321 87.9
Actinidia05618 Actinidia chinensis HOM05D005665 ORTHO05D007230 1.3e-169 599.7 317 89.0
THA.LOC104812890 Tarenaya hassleriana HOM05D005665 ORTHO05D007230 1.3e-169 599.7 327 86.2
Actinidia01890 Actinidia chinensis HOM05D005665 ORTHO05D007230 2.2e-169 599.0 317 88.6
Manes.16G026000 Manihot esculenta HOM05D005665 ORTHO05D007230 2.2e-169 599.0 322 86.0
CiPaw.09G058000 Carya illinoinensis HOM05D005665 ORTHO05D007230 6.5e-169 597.4 325 86.2
Eucgr.E03124 Eucalyptus grandis HOM05D005665 ORTHO05D007230 8.5e-169 597.0 316 87.3
Carub.0006s3285 Capsella rubella HOM05D005665 ORTHO05D007230 1.5e-168 596.3 332 84.0
Manes.17G043900 Manihot esculenta HOM05D005665 ORTHO05D007230 1.5e-168 596.3 330 84.8
Peaxi162Scf00461g00010 Petunia axillaris HOM05D005665 ORTHO05D007230 1.5e-168 596.3 325 87.1
TAR627G0371 Trochodendron aralioides HOM05D005665 ORTHO05D007230 1.9e-168 595.9 319 87.1
AUR62014800 Chenopodium quinoa HOM05D005665 ORTHO05D007230 3.2e-168 595.1 321 86.0
TWI38G1053 Tripterygium wilfordii HOM05D005665 ORTHO05D007230 3.2e-168 595.1 327 85.9
Duzib160G0567 Durio zibethinus HOM05D005665 ORTHO05D007230 4.2e-168 594.7 330 85.5
Gorai.011G026500 Gossypium raimondii HOM05D005665 ORTHO05D007230 4.2e-168 594.7 328 85.4
AUR62016991 Chenopodium quinoa HOM05D005665 ORTHO05D007230 7.2e-168 594.0 325 84.9
Gohir.A10G024500 Gossypium hirsutum HOM05D005665 ORTHO05D007230 7.2e-168 594.0 328 85.1
Nitab4.5_0013250g0010 Nicotiana tabacum HOM05D005665 ORTHO05D007230 9.4e-168 593.6 325 86.2
Duzib192G0757 Durio zibethinus HOM05D005665 ORTHO05D007230 1.2e-167 593.2 327 85.3
Sp6g04030 Schrenkiella parvula HOM05D005665 ORTHO05D007230 1.2e-167 593.2 329 83.9
SpUn0051_0010 Schrenkiella parvula HOM05D005665 ORTHO05D007230 1.2e-167 593.2 329 83.9
AT4G04930 Arabidopsis thaliana HOM05D005665 ORTHO05D007230 1.6e-167 592.8 333 84.4
BolC9t56129H Brassica oleracea HOM05D005665 ORTHO05D007230 3.6e-167 591.7 326 85.3
Thhalv10028789m.g Eutrema salsugineum HOM05D005665 ORTHO05D007230 6.1e-167 590.9 329 83.3
TAR626G1890 Trochodendron aralioides HOM05D005665 ORTHO05D007230 6.1e-167 590.9 320 85.0
CANSAT35G1141 Cannabis sativa HOM05D005665 ORTHO05D007230 1.0e-166 590.1 330 85.2
Gohir.D10G025200 Gossypium hirsutum HOM05D005665 ORTHO05D007230 1.4e-166 589.7 318 86.5
A09p25970 Brassica napus HOM05D005665 ORTHO05D007230 2.3e-166 589.0 326 84.7
BraA09t38164Z Brassica rapa HOM05D005665 ORTHO05D007230 2.3e-166 589.0 326 84.7
Hma1.2p1_0126F.1_g059290 Hydrangea macrophylla HOM05D005665 ORTHO05D007230 2.3e-166 589.0 318 86.8
CSS0000582 Camellia sinensis var. sinensis HOM05D005665 ORTHO05D007230 4.0e-166 588.2 314 86.3
Nitab4.5_0003942g0010 Nicotiana tabacum HOM05D005665 ORTHO05D007230 4.0e-166 588.2 322 86.0
ClCG03G005940 Citrullus lanatus HOM05D005665 ORTHO05D007230 5.2e-166 587.8 327 84.4
Nn1g06596 Nelumbo nucifera HOM05D005665 ORTHO05D007230 8.8e-166 587.0 326 83.1
Peaxi162Scf00530g00218 Petunia axillaris HOM05D005665 ORTHO05D007230 1.2e-165 586.6 329 84.8
Solyc10g009030.4 Solanum lycopersicum HOM05D005665 ORTHO05D007230 1.5e-165 586.3 326 85.6
Lj6g0021271 Lotus japonicus HOM05D005665 ORTHO05D007230 2.0e-165 585.9 330 84.8
Nitab4.5_0004775g0030 Nicotiana tabacum HOM05D005665 ORTHO05D007230 2.0e-165 585.9 323 85.8
Cpa.g.sc27.60 Carica papaya HOM05D005665 ORTHO05D007230 2.6e-165 585.5 319 85.0
Ciclev10015896m.g Citrus clementina HOM05D005665 ORTHO05D007230 2.6e-165 585.5 325 83.7
CsaV3_1G012180 Cucumis sativus L. HOM05D005665 ORTHO05D007230 3.3e-165 585.1 326 84.0
Nitab4.5_0005615g0050 Nicotiana tabacum HOM05D005665 ORTHO05D007230 3.3e-165 585.1 325 85.2
Sopen10g004810 Solanum pennellii HOM05D005665 ORTHO05D007230 3.3e-165 585.1 326 85.6
MELO3C002591.2 Cucumis melo HOM05D005665 ORTHO05D007230 5.7e-165 584.3 329 83.3
PGSC0003DMG400022827 Solanum tuberosum HOM05D005665 ORTHO05D007230 5.7e-165 584.3 326 85.6
Gohir.A06G126400 Gossypium hirsutum HOM05D005665 ORTHO05D007230 7.5e-165 583.9 327 83.5
Gohir.D06G131200 Gossypium hirsutum HOM05D005665 ORTHO05D007230 7.5e-165 583.9 327 83.8
BcaC04g21346 Brassica carinata HOM05D005665 ORTHO05D007230 9.7e-165 583.6 326 84.0
C09p32940 Brassica napus HOM05D005665 ORTHO05D007230 9.7e-165 583.6 326 84.0
Ca_00306_v3 Cicer arietinum L. HOM05D005665 ORTHO05D007230 1.3e-164 583.2 314 86.3
EL10Ac8g20360 Beta vulgaris HOM05D005665 ORTHO05D007230 2.2e-164 582.4 321 84.1
Nn1g04043 Nelumbo nucifera HOM05D005665 ORTHO05D007230 2.8e-164 582.0 313 85.6
Medtr2g013070 Medicago truncatula HOM05D005665 ORTHO05D007230 3.7e-164 581.6 329 82.7
ClCG01G022870 Citrullus lanatus HOM05D005665 ORTHO05D007230 6.3e-164 580.9 325 83.1
Lj2A287T49 Lonicera japonica HOM05D005665 ORTHO05D007230 6.3e-164 580.9 312 86.9
MSTRG.7328 Avicennia marina HOM05D005665 ORTHO05D007230 1.1e-163 580.1 325 83.1
Sabra11G0034800 Salix brachista HOM05D005665 ORTHO05D007230 1.1e-163 580.1 314 85.7
Sc05g0007780 Simmondsia chinensis HOM05D005665 ORTHO05D007230 1.1e-163 580.1 320 82.8
SGA_v2.0_scaffold22G09724 Striga asiatica HOM05D005665 ORTHO05D007230 1.1e-163 580.1 325 83.1
Potri.011G050800 Populus trichocarpa HOM05D005665 ORTHO05D007230 1.4e-163 579.7 314 85.7
Haze_06494 Corylus avellana HOM05D005665 ORTHO05D007230 1.8e-163 579.3 387 74.4
TPR.G36824 Trifolium pratense HOM05D005665 ORTHO05D007230 1.8e-163 579.3 327 83.8
Aqoxy4G01024 Aquilegia oxysepala HOM05D005665 ORTHO05D007230 3.1e-163 578.6 322 82.3
GSVIVG01002020001 Vitis vinifera HOM05D005665 ORTHO05D007230 3.1e-163 578.6 310 85.5
Migut.M01155 Erythranthe guttata HOM05D005665 ORTHO05D007230 4.1e-163 578.2 322 84.5
Gorai.010G153100 Gossypium raimondii HOM05D005665 ORTHO05D007230 7.0e-163 577.4 318 84.6
Os02g0639600 Oryza sativa ssp. japonica HOM05D005665 ORTHO05D007230 1.6e-162 576.2 321 82.2
Cc02_g13170 Coffea canephora HOM05D005665 ORTHO05D007230 2.0e-162 575.9 310 85.2
PSO210G3809 Papaver somniferum HOM05D005665 ORTHO05D007230 2.0e-162 575.9 317 83.9
PSO832G3519 Papaver somniferum HOM05D005665 ORTHO05D007230 2.0e-162 575.9 317 83.9
SalBow7G1156 Salvia bowleyana HOM05D005665 ORTHO05D007230 2.0e-162 575.9 319 83.4
Lalb_Chr18g0059701 Lupinus albus HOM05D005665 ORTHO05D007230 2.7e-162 575.5 315 85.1
PGR042G0011 Punica granatum HOM05D005665 ORTHO05D007230 5.9e-162 574.3 326 82.8
BcaB01g01848 Brassica carinata HOM05D005665 ORTHO05D007230 7.7e-162 573.9 314 84.7
Oeu053967.2 Olea europaea HOM05D005665 ORTHO05D007230 1.7e-161 572.8 319 84.0
Sed0027057 Sechium edule HOM05D005665 ORTHO05D007230 3.8e-161 571.6 317 83.9
Phvul.006G187100 Phaseolus vulgaris HOM05D005665 ORTHO05D007230 1.5e-160 569.7 329 81.2
VMungo0540G1872 Vigna mungo HOM05D005665 ORTHO05D007230 1.5e-160 569.7 321 81.3
Glyma.15G072800 Glycine max HOM05D005665 ORTHO05D007230 1.9e-160 569.3 329 80.9
Aa31LG9G9560 Aethionema arabicum HOM05D005665 ORTHO05D007230 1.2e-159 566.6 319 82.1
Atru.chr10.1913 Acer truncatum HOM05D005665 ORTHO05D007230 2.7e-159 565.5 323 82.4
ATR0680G322 Amborella trichopoda HOM05D005665 ORTHO05D007230 3.6e-159 565.1 316 81.3
Psat1g206640 Pisum sativum HOM05D005665 ORTHO05D007230 1.0e-158 563.5 329 80.2
COL.COLO4_31496 Corchorus olitorius HOM05D005665 ORTHO05D007230 1.8e-158 562.8 300 87.7
Sed0024618 Sechium edule HOM05D005665 ORTHO05D007230 6.8e-158 560.8 327 81.0
MBI18_g16999_MAGBIO Magnolia biondii HOM05D005665 ORTHO05D007230 1.7e-156 556.2 320 81.6
Zm00001eb075800 Zea mays HOM05D005665 ORTHO05D007230 3.7e-156 555.1 319 79.3
Glyma.13G240700 Glycine max HOM05D005665 ORTHO05D007230 8.3e-156 553.9 329 78.7
arahy.Tifrunner.gnm1.ann1.5IXZ6F Arachis hypogaea HOM05D005665 ORTHO05D007230 7.7e-154 547.4 333 78.4
arahy.Tifrunner.gnm1.ann1.C923ZL Arachis hypogaea HOM05D005665 ORTHO05D007230 2.3e-153 545.8 333 78.1
SHI01876 Sapria himalayana HOM05D005665 ORTHO05D007230 4.2e-152 541.6 345 74.2
Ah.09g237240 Amaranthus hybridus HOM05D005665 ORTHO05D007230 9.8e-149 530.4 304 80.3
Eucgr.L02776 Eucalyptus grandis HOM05D005665 ORTHO05D007230 1.0e-145 520.4 278 86.3
SEGI_10058 Sequoiadendron giganteum HOM05D005665 ORTHO05D007230 4.3e-144 515.0 308 77.3
HPP92_021012 Vanilla planifolia HOM05D005665 ORTHO05D007230 3.6e-143 511.9 323 74.6
CDE01G0218 Ceratophyllum demersum HOM05D005098 ORTHO05D006646 5.2e-142 508.1 295 78.3
Lsat_1_v5_gn_1_126041 Lactuca sativa HOM05D005665 ORTHO05D007230 5.2e-142 508.1 311 74.0
Nitab4.5_0002158g0010 Nicotiana tabacum HOM05D005665 ORTHO05D007230 2.9e-140 502.3 307 78.8
RhsimUnG0044900 Rhododendron simsii HOM05D005665 ORTHO05D007230 4.6e-138 495.0 268 85.4
CAN.G413.22 Capsicum annuum HOM05D005665 ORTHO05D007230 5.9e-138 494.6 266 86.5
MD05G1314600 Malus domestica HOM05D005665 ORTHO05D007230 7.3e-136 487.6 338 71.0
Mapoly0083s0054 Marchantia polymorpha HOM05D005665 ORTHO05D007230 7.3e-136 487.6 314 71.0
SMO364G0702 Selaginella moellendorffii HOM05D005665 ORTHO05D007230 3.9e-129 465.3 312 66.3
Pp3c23_19370 Physcomitrium patens HOM05D005665 ORTHO05D007230 4.7e-127 458.4 337 64.1
Pp3c23_19371 Physcomitrium patens HOM05D005665 ORTHO05D007230 4.7e-127 458.4 337 64.1
AagrBONN_evm.TU.Sc2ySwM_344.2491 Anthoceros agrestis HOM05D005665 ORTHO05D007230 2.3e-126 456.1 309 67.0
DCAR_004082 Daucus carota HOM05D005665 ORTHO05D007230 5.1e-121 438.3 251 80.1
AagrBONN_evm.TU.Sc2ySwM_344.2084 Anthoceros agrestis HOM05D005665 ORTHO05D007230 9.9e-117 424.1 311 62.1
CSS0037689 Camellia sinensis var. sinensis HOM05D005665 ORTHO05D007230 1.9e-112 409.8 234 84.2
MCO04G319 Micromonas commoda HOM05D005665 ORTHO05D007230 4.3e-104 382.1 323 57.0
CDE02G1299 Ceratophyllum demersum HOM05D005665 ORTHO05D007230 1.9e-99 366.7 250 70.0
unitig_21.g20852 Utricularia gibba HOM05D005665 ORTHO05D007230 3.4e-93 345.9 215 75.3
PRCOL_00001033 Prasinoderma coloniale HOM05D005665 ORTHO05D007230 1.1e-91 340.9 318 50.6
Cfa021982 Carpinus fangiana HOM05D005665 ORTHO05D007230 4.6e-82 308.9 344 44.8
Haze_26717 Corylus avellana HOM05D005665 ORTHO05D007230 8.2e-71 271.6 360 40.6
Thecc.05G195100 Theobroma cacao HOM05D005665 ORTHO05D007230 7.7e-53 211.8 123 74.8
MELO3C007292.2 Cucumis melo HOM05D005665 ORTHO05D039877 3.7e-31 139.8 89 77.5
Dinv40542 Davidia involucrata HOM05D005665 ORTHO05D007230 1.1e-30 138.3 82 81.7
TAR629G1936 Trochodendron aralioides HOM05D000151 ORTHO05D000074 1.1e-22 111.7 84 69.0
BcaB05g23333 Brassica carinata HOM05D005665 ORTHO05D039877 1.6e-21 107.8 68 75.0
Zm00001eb175420 Zea mays HOM05D005665 ORTHO05D007230 9.2e-14 82.0 47 78.7
DCAR_004083 Daucus carota HOM05D000799 ORTHO05D000629 3.5e-13 80.1 51 70.6
Thecc.05G194800 Theobroma cacao HOM05D005665 ORTHO05D007230 3.5e-13 80.1 68 63.2
Zm00001eb423550 Zea mays HOM05D005665 ORTHO05D007230 1.3e-12 78.2 41 85.4
SEGI_41581 Sequoiadendron giganteum HOM05D005665 ORTHO05D007230 1.3e-07 61.6 59 52.5


User provided reference genes

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