Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_3g04910 Fragaria vesca HOM05D007576 ORTHO05D009576 0.0e+00 1398.3 728 100.0
FAN11G2000 Fragaria x ananassa HOM05D007576 ORTHO05D009576 0.0e+00 1359.0 732 97.0
FAN16G1901 Fragaria x ananassa HOM05D007576 ORTHO05D009576 0.0e+00 1339.3 738 95.7
FAN25G3788 Fragaria x ananassa HOM05D007576 ORTHO05D009576 0.0e+00 1327.8 738 94.9
FAN21G0504 Fragaria x ananassa HOM05D007576 ORTHO05D009576 0.0e+00 1308.1 738 93.5
RcHm_v2.0_Chr5g0008071 Rosa chinensis HOM05D007576 ORTHO05D009576 0.0e+00 1153.3 745 83.6
Prupe.4G044400 Prunus persica HOM05D007576 ORTHO05D009576 1.6e-252 876.3 739 66.4
MD10G1296200 Malus domestica HOM05D007576 ORTHO05D009576 2.7e-252 875.5 745 65.2
MD05G1314800 Malus domestica HOM05D007576 ORTHO05D009576 1.4e-240 836.6 745 64.0
Cfa000420 Carpinus fangiana HOM05D007576 ORTHO05D009576 1.7e-222 776.5 748 58.4
CiPaw.09G057800 Carya illinoinensis HOM05D007576 ORTHO05D009576 8.9e-211 737.6 745 56.8
QL05p039732 Quercus lobata HOM05D007576 ORTHO05D009576 3.2e-208 729.2 748 55.9
Manes.17G043700 Manihot esculenta HOM05D007576 ORTHO05D009576 3.2e-200 702.6 751 53.8
Thecc.06G190300 Theobroma cacao HOM05D007576 ORTHO05D009576 3.9e-198 695.7 744 54.8
Duzib192G1068 Durio zibethinus HOM05D007576 ORTHO05D009576 6.6e-198 694.9 746 54.2
COL.COLO4_31497 Corchorus olitorius HOM05D007576 ORTHO05D009576 9.0e-195 684.5 756 53.0
Sabra11G0034500 Salix brachista HOM05D007576 ORTHO05D009576 3.8e-193 679.1 755 53.4
Potri.011G050600 Populus trichocarpa HOM05D007576 ORTHO05D009576 3.5e-191 672.5 757 53.9
Ciclev10014397m.g Citrus clementina HOM05D007576 ORTHO05D009576 1.0e-190 671.0 740 52.7
CANSAT35G0220 Cannabis sativa HOM05D007576 ORTHO05D009576 3.7e-188 662.5 755 53.4
CSS0005805 Camellia sinensis var. sinensis HOM05D007576 ORTHO05D009576 4.6e-183 645.6 753 51.3
Dinv07540 Davidia involucrata HOM05D007576 ORTHO05D009576 5.1e-182 642.1 755 51.0
Gorai.010G153000 Gossypium raimondii HOM05D007576 ORTHO05D009576 7.4e-181 638.3 745 50.2
TWI38G1553 Tripterygium wilfordii HOM05D007576 ORTHO05D009576 1.6e-180 637.1 747 51.4
Cpa.g.sc1598.2 Carica papaya HOM05D007576 ORTHO05D009576 5.3e-179 632.1 712 52.9
Gohir.D06G131100 Gossypium hirsutum HOM05D007576 ORTHO05D009576 5.3e-179 632.1 745 49.9
Gohir.A06G126300 Gossypium hirsutum HOM05D007576 ORTHO05D009576 9.0e-179 631.3 747 49.8
Haze_06496 Corylus avellana HOM05D007576 ORTHO05D009576 3.8e-177 625.9 655 55.1
RhsimUnG0044800 Rhododendron simsii HOM05D007576 ORTHO05D009576 6.5e-177 625.2 746 50.8
Glyma.05G009500 Glycine max HOM05D007576 ORTHO05D009576 1.1e-176 624.4 755 50.9
arahy.Tifrunner.gnm1.ann1.TJT9YV Arachis hypogaea HOM05D007576 ORTHO05D009576 1.9e-176 623.6 691 53.7
arahy.Tifrunner.gnm1.ann1.TJX0PA Arachis hypogaea HOM05D007576 ORTHO05D009576 1.2e-175 620.9 691 53.4
MELO3C007295.2 Cucumis melo HOM05D007576 ORTHO05D009576 2.7e-175 619.8 731 49.4
Glyma.17G117500 Glycine max HOM05D007576 ORTHO05D009576 3.0e-174 616.3 729 51.4
VMungo1215G0476 Vigna mungo HOM05D007576 ORTHO05D009576 3.0e-174 616.3 748 49.7
ClCG01G022850 Citrullus lanatus HOM05D007576 ORTHO05D009576 5.1e-174 615.5 732 49.6
Phvul.003G161900 Phaseolus vulgaris HOM05D007576 ORTHO05D009576 6.7e-174 615.1 727 51.0
Lalb_Chr13g0302021 Lupinus albus HOM05D007576 ORTHO05D009576 1.1e-173 614.4 741 49.4
Ca_21702_v3 Cicer arietinum L. HOM05D007576 ORTHO05D009576 3.7e-172 609.4 683 51.1
CsaV3_6G050020 Cucumis sativus L. HOM05D007576 ORTHO05D009576 3.1e-171 606.3 731 48.8
Medtr4g113740 Medicago truncatula HOM05D007576 ORTHO05D009576 3.2e-168 596.3 695 50.5
Sed0017500 Sechium edule HOM05D007576 ORTHO05D009576 3.6e-167 592.8 737 47.5
Eucgr.E03347 Eucalyptus grandis HOM05D007576 ORTHO05D009576 7.9e-167 591.7 684 50.4
Psat4g041840 Pisum sativum HOM05D007576 ORTHO05D009576 1.8e-166 590.5 695 50.8
Lj4g0015142 Lotus japonicus HOM05D007576 ORTHO05D009576 2.4e-163 580.1 703 49.6
Lj1A1207T83 Lonicera japonica HOM05D007576 ORTHO05D009576 6.7e-158 562.0 727 48.7
Nitab4.5_0009493g0040 Nicotiana tabacum HOM05D007576 ORTHO05D009576 4.1e-155 552.7 744 45.7
Nn1g06600 Nelumbo nucifera HOM05D007576 ORTHO05D009576 1.3e-153 547.7 786 45.7
Nitab4.5_0001357g0010 Nicotiana tabacum HOM05D007576 ORTHO05D009576 1.7e-153 547.4 744 45.3
Hund21235 Selenicereus undatus HOM05D007576 ORTHO05D009576 7.9e-151 538.5 688 46.4
PGSC0003DMG400022439 Solanum tuberosum HOM05D007576 ORTHO05D009576 3.9e-150 536.2 742 44.5
Sc05g0007790 Simmondsia chinensis HOM05D007576 ORTHO05D009576 2.0e-149 533.9 761 45.1
CAN.G1164.10 Capsicum annuum HOM05D007576 ORTHO05D009576 3.1e-147 526.6 744 44.9
Sopen02g023320 Solanum pennellii HOM05D007576 ORTHO05D009576 2.0e-146 523.9 746 44.4
AUR62016989 Chenopodium quinoa HOM05D007576 ORTHO05D009576 8.5e-145 518.5 738 44.2
AUR62014798 Chenopodium quinoa HOM05D007576 ORTHO05D009576 4.2e-144 516.2 748 44.9
Aqoxy1G02531 Aquilegia oxysepala HOM05D007576 ORTHO05D009576 4.7e-143 512.7 787 44.1
Aqoxy1G02534 Aquilegia oxysepala HOM05D007576 ORTHO05D009576 4.7e-143 512.7 787 44.1
PGR042G0577 Punica granatum HOM05D007576 ORTHO05D009576 8.8e-142 508.4 741 44.5
Cc02_g13130 Coffea canephora HOM05D007576 ORTHO05D009576 1.2e-141 508.1 742 43.3
PSO675G5421 Papaver somniferum HOM05D007576 ORTHO05D009576 1.8e-139 500.7 793 42.6
Ah.14g089350 Amaranthus hybridus HOM05D007576 ORTHO05D009576 9.1e-139 498.4 727 43.5
DCAR_008044 Daucus carota HOM05D007576 ORTHO05D009576 3.5e-138 496.5 673 46.2
EL10Ac8g20358 Beta vulgaris HOM05D007576 ORTHO05D009576 7.7e-138 495.4 739 43.0
MBI18_g17005_MAGBIO Magnolia biondii HOM05D007576 ORTHO05D009576 4.1e-131 473.0 844 40.9
SalBow8G3709 Salvia bowleyana HOM05D007576 ORTHO05D009576 7.7e-130 468.8 751 41.7
MSTRG.15916 Avicennia marina HOM05D007576 ORTHO05D009576 2.9e-129 466.8 745 40.9
SGA_v2.0_scaffold7G03972 Striga asiatica HOM05D007576 ORTHO05D009576 6.1e-127 459.1 758 41.6
Lsat_1_v5_gn_4_52541 Lactuca sativa HOM05D007576 ORTHO05D009576 4.0e-126 456.4 737 41.5
Peaxi162Scf00947g00422 Petunia axillaris HOM05D007576 ORTHO05D009576 4.4e-125 453.0 600 45.8
HanXRQChr16g0518181 Helianthus annuus HOM05D007576 ORTHO05D009576 2.9e-121 440.3 726 41.6
Migut.M01192 Erythranthe guttata HOM05D007576 ORTHO05D009576 5.6e-120 436.0 734 40.3
Atru.chr10.1919 Acer truncatum HOM05D007576 ORTHO05D009576 9.5e-120 435.3 542 50.4
ECA234G2395 Erigeron canadensis HOM05D007576 ORTHO05D009576 7.5e-117 425.6 703 41.5
TPR.G10703 Trifolium pratense HOM05D007576 ORTHO05D009576 1.7e-108 397.9 332 64.5
GSVIVG01002036001 Vitis vinifera HOM05D007576 ORTHO05D009576 5.0e-105 386.3 301 67.8
CSS0010553 Camellia sinensis var. sinensis HOM05D007576 ORTHO05D009576 2.8e-103 380.6 724 39.1
PSO541G6317 Papaver somniferum HOM05D007576 ORTHO05D009576 5.1e-97 359.8 475 48.6
HPP92_014806 Vanilla planifolia HOM05D007576 ORTHO05D009576 1.9e-96 357.8 727 36.7
CDE01G0107 Ceratophyllum demersum HOM05D007576 ORTHO05D009576 2.6e-85 320.9 470 45.5
Ciclev10008775m.g Citrus clementina HOM05D007576 ORTHO05D009576 2.2e-84 317.8 376 51.6
Oeu038219.1 Olea europaea HOM05D007576 ORTHO05D009576 6.4e-84 316.2 240 69.6
ATR0680G038 Amborella trichopoda HOM05D007576 ORTHO05D009576 2.3e-81 307.8 560 38.2
Os06g0731700 Oryza sativa ssp. japonica HOM05D007576 ORTHO05D009576 1.2e-74 285.4 326 49.4
Zm00001eb229030 Zea mays HOM05D007576 ORTHO05D009576 1.5e-72 278.5 263 55.1
Pp3c11_25570 Physcomitrium patens HOM05D007576 ORTHO05D009576 9.0e-54 216.1 325 41.8
Mapoly0181s0007 Marchantia polymorpha HOM05D007576 ORTHO05D009576 1.7e-52 211.8 245 46.5
Ciclev10009735m.g Citrus clementina HOM05D007576 ORTHO05D009576 5.9e-45 186.8 157 64.3
Duzib235G0673 Durio zibethinus HOM05D007576 ORTHO05D009576 5.5e-43 180.3 158 61.4
Atru.chr10.1928 Acer truncatum HOM05D007576 ORTHO05D009576 8.8e-41 172.9 316 41.1
Lj2g0021670 Lotus japonicus HOM05D007576 ORTHO05D009576 4.8e-39 167.2 188 50.5
Solyc02g078470.4 Solanum lycopersicum HOM05D007576 ORTHO05D009576 3.1e-30 137.9 98 68.4
CBR_g49326 Chara braunii HOM05D007576 ORTHO05D000002 1.4e-25 122.5 208 37.5
MELO3C003884.2 Cucumis melo HOM05D007576 ORTHO05D009576 3.6e-18 97.8 155 38.7
ECA247G2871 Erigeron canadensis HOM05D000526 ORTHO05D000956 4.7e-18 97.4 80 62.5
SEGI_32076 Sequoiadendron giganteum HOM05D007576 ORTHO05D009576 5.7e-16 90.5 84 50.0
Atru.chr10.1920 Acer truncatum HOM05D007576 ORTHO05D009576 1.3e-15 89.4 122 45.9
Cre13.g589167 Chlamydomonas reinhardtii HOM05D007576 ORTHO05D009576 2.1e-10 72.0 242 26.0
MCO14G177 Micromonas commoda HOM05D004623 ORTHO05D005100 1.7e-07 62.4 137 31.4
QL05p034837 Quercus lobata HOM05D007576 ORTHO05D009576 1.1e-06 59.7 71 46.5


User provided reference genes

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