Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_3g03932 Fragaria vesca HOM05D006577 ORTHO05D008428 4.6e-79 297.7 143 100.0
FAN20G0322 Fragaria x ananassa HOM05D006577 ORTHO05D008428 7.3e-16 87.8 39 100.0
RcHm_v2.0_Chr6g0304321 Rosa chinensis HOM05D006577 ORTHO05D008428 7.3e-16 87.8 39 100.0
FvH4_2g37380 Fragaria vesca HOM05D006577 ORTHO05D008428 9.5e-16 87.4 46 89.1
FAN21G2299 Fragaria x ananassa HOM05D006577 ORTHO05D008428 9.5e-16 87.4 46 89.1
FAN27G1697 Fragaria x ananassa HOM05D006577 ORTHO05D008428 9.5e-16 87.4 46 89.1
Ca_13135_v3 Cicer arietinum L. HOM05D006577 ORTHO05D008428 1.6e-15 86.7 39 97.4
FAN21G2282 Fragaria x ananassa HOM05D006577 ORTHO05D011051 2.8e-15 85.9 46 87.0
FAN21G2462 Fragaria x ananassa HOM05D006577 ORTHO05D011051 2.8e-15 85.9 46 87.0
Glyma.11G090300 Glycine max HOM05D006577 ORTHO05D008428 3.6e-15 85.5 39 94.9
Glyma.01G154300 Glycine max HOM05D006577 ORTHO05D008428 8.1e-15 84.3 39 92.3
ClCG11G016060 Citrullus lanatus HOM05D006577 ORTHO05D008428 1.8e-14 83.2 71 63.4
Lj2g0006155 Lotus japonicus HOM05D006577 ORTHO05D008428 1.8e-14 83.2 39 92.3
MD08G1001400 Malus domestica HOM05D006577 ORTHO05D008428 2.3e-14 82.8 39 92.3
Medtr2g040410 Medicago truncatula HOM05D006577 ORTHO05D008428 4.0e-14 82.0 40 95.0
Psat1g131640 Pisum sativum HOM05D006577 ORTHO05D008428 4.0e-14 82.0 40 95.0
Rhsim11G0036700 Rhododendron simsii HOM05D006577 ORTHO05D008428 5.2e-14 81.6 42 90.5
TAR629G1131 Trochodendron aralioides HOM05D006577 ORTHO05D008428 6.8e-14 81.3 42 90.5
TPR.G29075 Trifolium pratense HOM05D006577 ORTHO05D008428 8.9e-14 80.9 40 92.5
Cpa.g.sc90.36 Carica papaya HOM05D006577 ORTHO05D008428 1.2e-13 80.5 39 94.9
CDE12G0431 Ceratophyllum demersum HOM05D006577 ORTHO05D008428 1.2e-13 80.5 51 76.5
Dinv41806 Davidia involucrata HOM05D006577 ORTHO05D008428 1.2e-13 80.5 45 84.4
Sed0006082 Sechium edule HOM05D006577 ORTHO05D008428 1.2e-13 80.5 42 90.5
Aqoxy7G00896 Aquilegia oxysepala HOM05D006577 ORTHO05D008428 1.5e-13 80.1 39 94.9
arahy.Tifrunner.gnm1.ann1.0U4NMV Arachis hypogaea HOM05D006577 ORTHO05D008428 1.5e-13 80.1 39 94.9
arahy.Tifrunner.gnm1.ann1.Y0J304 Arachis hypogaea HOM05D006577 ORTHO05D008428 1.5e-13 80.1 39 94.9
HanXRQChr07g0198411 Helianthus annuus HOM05D006577 ORTHO05D008428 1.5e-13 80.1 59 69.5
Lsat_1_v5_gn_6_17281 Lactuca sativa HOM05D006577 ORTHO05D008428 1.5e-13 80.1 46 84.8
Lalb_Chr16g0380351 Lupinus albus HOM05D006577 ORTHO05D008428 1.5e-13 80.1 39 94.9
Nn7g37388 Nelumbo nucifera HOM05D006577 ORTHO05D008428 1.5e-13 80.1 42 88.1
Prupe.1G353400 Prunus persica HOM05D006577 ORTHO05D008428 1.5e-13 80.1 39 94.9
QL12p004173 Quercus lobata HOM05D006577 ORTHO05D008428 1.5e-13 80.1 39 94.9
Sc24g0001520 Simmondsia chinensis HOM05D006577 ORTHO05D008428 1.5e-13 80.1 39 94.9
EL10Ac8g19602 Beta vulgaris HOM05D006577 ORTHO05D008428 2.0e-13 79.7 39 94.9
CiPaw.11G075200 Carya illinoinensis HOM05D006577 ORTHO05D008428 2.0e-13 79.7 39 92.3
Aa31LG6G1900 Aethionema arabicum HOM05D006577 ORTHO05D008428 2.6e-13 79.3 41 90.2
CSS0014058 Camellia sinensis var. sinensis HOM05D006577 ORTHO05D008428 2.6e-13 79.3 42 88.1
AUR62030109 Chenopodium quinoa HOM05D006577 ORTHO05D008428 2.6e-13 79.3 39 89.7
MELO3C010522.2 Cucumis melo HOM05D006577 ORTHO05D008428 2.6e-13 79.3 39 94.9
CsaV3_4G027910 Cucumis sativus L. HOM05D006577 ORTHO05D008428 2.6e-13 79.3 39 94.9
ECA233G0973 Erigeron canadensis HOM05D006577 ORTHO05D008428 2.6e-13 79.3 49 79.6
Thhalv10024821m.g Eutrema salsugineum HOM05D006577 ORTHO05D008428 2.6e-13 79.3 41 90.2
Oeu015543.2 Olea europaea HOM05D006577 ORTHO05D008428 2.6e-13 79.3 71 60.6
PSO502G0007 Papaver somniferum HOM05D006577 ORTHO05D008428 2.6e-13 79.3 39 92.3
PSO675G5955 Papaver somniferum HOM05D006577 ORTHO05D008428 2.6e-13 79.3 39 92.3
Sabra01G0180600 Salix brachista HOM05D006577 ORTHO05D008428 2.6e-13 79.3 39 94.9
CDE01G0285 Ceratophyllum demersum HOM05D006577 ORTHO05D008428 3.4e-13 79.0 39 92.3
Phvul.002G121300 Phaseolus vulgaris HOM05D006577 ORTHO05D008428 3.4e-13 79.0 39 92.3
TWI73G0063 Tripterygium wilfordii HOM05D006577 ORTHO05D008428 3.4e-13 79.0 39 92.3
vmacro00091 Vaccinium macrocarpon HOM05D006577 ORTHO05D008428 3.4e-13 79.0 42 88.1
VMungo1215G3406 Vigna mungo HOM05D006577 ORTHO05D008428 3.4e-13 79.0 39 92.3
GSVIVG01036870001 Vitis vinifera HOM05D006577 ORTHO05D008428 3.4e-13 79.0 39 92.3
Cfa012291 Carpinus fangiana HOM05D000435 ORTHO05D000430 4.4e-13 78.6 39 89.7
COL.COLO4_11282 Corchorus olitorius HOM05D006577 ORTHO05D008428 4.4e-13 78.6 39 92.3
Haze_08434 Corylus avellana HOM05D006577 ORTHO05D008428 4.4e-13 78.6 39 89.7
Gohir.A08G149500 Gossypium hirsutum HOM05D006577 ORTHO05D008428 4.4e-13 78.6 39 92.3
Gohir.D08G170500 Gossypium hirsutum HOM05D006577 ORTHO05D008428 4.4e-13 78.6 39 92.3
Gorai.004G178000 Gossypium raimondii HOM05D006577 ORTHO05D008428 4.4e-13 78.6 39 92.3
Potri.004G236300 Populus trichocarpa HOM05D006577 ORTHO05D008428 4.4e-13 78.6 39 92.3
Thecc.03G318900 Theobroma cacao HOM05D006577 ORTHO05D008428 4.4e-13 78.6 39 92.3
Zm00001eb227500 Zea mays HOM05D006577 ORTHO05D008428 4.4e-13 78.6 42 88.1
MSTRG.1757 Avicennia marina HOM05D006577 ORTHO05D008428 5.8e-13 78.2 39 92.3
Manes.17G000100 Manihot esculenta HOM05D006577 ORTHO05D008428 5.8e-13 78.2 39 92.3
HPP92_002488 Vanilla planifolia HOM05D006577 ORTHO05D008428 5.8e-13 78.2 42 85.7
AT4G19190 Arabidopsis thaliana HOM05D006577 ORTHO05D008428 7.5e-13 77.8 39 92.3
A01p11160 Brassica napus HOM05D006577 ORTHO05D008428 7.5e-13 77.8 41 87.8
C01p13200 Brassica napus HOM05D006577 ORTHO05D008428 7.5e-13 77.8 41 87.8
BolC1t01294H Brassica oleracea HOM05D006577 ORTHO05D008428 7.5e-13 77.8 41 87.8
BraA01t01062Z Brassica rapa HOM05D006577 ORTHO05D008428 7.5e-13 77.8 41 87.8
Sp7g17900 Schrenkiella parvula HOM05D006577 ORTHO05D008428 7.5e-13 77.8 39 92.3
DCAR_030906 Daucus carota HOM05D006577 ORTHO05D008428 9.9e-13 77.4 39 92.3
THA.LOC104806196 Tarenaya hassleriana HOM05D006577 ORTHO05D008428 9.9e-13 77.4 39 89.7
FAN21G2626 Fragaria x ananassa HOM05D006577 ORTHO05D011051 1.7e-12 76.6 39 92.3
CANSAT35G0698 Cannabis sativa HOM05D006577 ORTHO05D008428 2.2e-12 76.3 39 92.3
Mapoly0190s0006 Marchantia polymorpha HOM05D006577 ORTHO05D008428 2.2e-12 76.3 43 79.1
PGR042G0863 Punica granatum HOM05D006577 ORTHO05D008428 2.2e-12 76.3 39 89.7
Ah.09g232390 Amaranthus hybridus HOM05D006577 ORTHO05D008428 2.9e-12 75.9 39 92.3
Hund17692 Selenicereus undatus HOM05D006577 ORTHO05D008428 2.9e-12 75.9 42 85.7
CAN.G1026.7 Capsicum annuum HOM05D006577 ORTHO05D008428 3.7e-12 75.5 39 92.3
Peaxi162Scf00193g00730 Petunia axillaris HOM05D006577 ORTHO05D008428 3.7e-12 75.5 39 89.7
Solyc08g075420.4 Solanum lycopersicum HOM05D006577 ORTHO05D008428 3.7e-12 75.5 39 92.3
Sopen08g024050 Solanum pennellii HOM05D006577 ORTHO05D008428 3.7e-12 75.5 39 92.3
AL7G34890 Arabidopsis lyrata HOM05D006577 ORTHO05D008428 6.4e-12 74.7 39 89.7
Nitab4.5_0000030g0480 Nicotiana tabacum HOM05D006577 ORTHO05D008428 6.4e-12 74.7 39 89.7
Nitab4.5_0007095g0010 Nicotiana tabacum HOM05D006577 ORTHO05D008428 6.4e-12 74.7 39 89.7
Oeu046783.1 Olea europaea HOM05D006577 ORTHO05D008428 6.4e-12 74.7 39 87.2
Actinidia32789 Actinidia chinensis HOM05D006577 ORTHO05D008428 8.3e-12 74.3 39 89.7
AUR62042461 Chenopodium quinoa HOM05D006577 ORTHO05D008428 8.3e-12 74.3 37 86.5
Eucgr.D02560 Eucalyptus grandis HOM05D006577 ORTHO05D008428 8.3e-12 74.3 39 89.7
Carub.0007s2195 Capsella rubella HOM05D006577 ORTHO05D008428 1.1e-11 73.9 39 89.7
CARHR123800 Cardamine hirsuta HOM05D006577 ORTHO05D008428 1.1e-11 73.9 39 89.7
CARHR226070 Cardamine hirsuta HOM05D006577 ORTHO05D008428 1.1e-11 73.9 39 89.7
Cc08_g05650 Coffea canephora HOM05D006577 ORTHO05D008428 1.1e-11 73.9 39 89.7
Migut.E01373 Erythranthe guttata HOM05D006577 ORTHO05D008428 1.1e-11 73.9 41 85.4
ATR0568G043 Amborella trichopoda HOM05D006577 ORTHO05D008428 1.4e-11 73.6 43 81.4
Pp3c3_31660 Physcomitrium patens HOM05D006577 ORTHO05D008428 5.4e-11 71.6 52 65.4
Atru.chr8.2629 Acer truncatum HOM05D006577 ORTHO05D008428 9.2e-11 70.9 40 85.0
Ciclev10011516m.g Citrus clementina HOM05D006577 ORTHO05D008428 9.2e-11 70.9 40 85.0
BcaB08g35318 Brassica carinata HOM05D006577 ORTHO05D008428 2.7e-10 69.3 54 63.0
SMO172G0042 Selaginella moellendorffii HOM05D006577 ORTHO05D008428 4.6e-10 68.6 38 76.3
SEGI_36653 Sequoiadendron giganteum HOM05D006577 ORTHO05D008428 1.3e-09 67.0 74 55.4
unitig_37.g12910 Utricularia gibba HOM05D006577 ORTHO05D008428 1.7e-09 66.6 39 79.5
CBR_g50314 Chara braunii HOM05D006577 ORTHO05D008428 4.7e-07 58.5 38 73.7
BcaC09g51429 Brassica carinata HOM05D006577 ORTHO05D008428 3.1e-06 55.8 34 76.5
Lj3A8T28 Lonicera japonica HOM05D006577 ORTHO05D008428 6.8e-06 54.7 28 89.3
Lj3C28T3 Lonicera japonica HOM05D006577 ORTHO05D008428 6.8e-06 54.7 28 89.3


User provided reference genes

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