Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_3g03840 Fragaria vesca HOM05D013275 ORTHO05D015659 5.2e-57 224.2 115 100.0
FAN26G1684 Fragaria x ananassa HOM05D013275 ORTHO05D015659 8.2e-26 120.6 82 79.3
FAN24G3006 Fragaria x ananassa HOM05D013275 ORTHO05D015659 3.1e-25 118.6 82 79.3
FAN14G0881 Fragaria x ananassa HOM05D013275 ORTHO05D015659 2.6e-24 115.5 81 79.0
FAN04G0840 Fragaria x ananassa HOM05D013275 ORTHO05D015659 7.6e-24 114.0 82 76.8
FvH4_6g27110 Fragaria vesca HOM05D013275 ORTHO05D015659 1.1e-22 110.2 63 87.3
FAN17G0354 Fragaria x ananassa HOM05D013275 ORTHO05D015659 3.2e-22 108.6 61 91.8
FAN07G0623 Fragaria x ananassa HOM05D013275 ORTHO05D015659 1.6e-21 106.3 64 84.4
FAN13G2927 Fragaria x ananassa HOM05D000025 ORTHO05D000040 6.7e-20 100.9 63 82.5
FvH4_7g02810 Fragaria vesca HOM05D003212 ORTHO05D003959 1.5e-19 99.8 64 81.2
FAN01G2682 Fragaria x ananassa HOM05D003212 ORTHO05D003959 1.5e-19 99.8 64 81.2
FAN03G0414 Fragaria x ananassa HOM05D003212 ORTHO05D003959 1.5e-19 99.8 64 81.2
FAN06G3951 Fragaria x ananassa HOM05D003212 ORTHO05D003959 1.5e-19 99.8 64 81.2
FAN10G3499 Fragaria x ananassa HOM05D003212 ORTHO05D003959 1.5e-19 99.8 64 81.2
RcHm_v2.0_Chr1g0323241 Rosa chinensis HOM05D003212 ORTHO05D003959 1.9e-19 99.4 64 81.2
Oeu002655.1 Olea europaea HOM05D003212 ORTHO05D003959 9.7e-19 97.1 64 75.0
MD09G1262400 Malus domestica HOM05D003212 ORTHO05D003959 1.3e-18 96.7 64 78.1
Actinidia21523 Actinidia chinensis HOM05D003212 ORTHO05D003959 1.6e-18 96.3 64 75.0
Oeu003925.2 Olea europaea HOM05D003212 ORTHO05D003959 1.6e-18 96.3 64 76.6
Prupe.2G032600 Prunus persica HOM05D003212 ORTHO05D003959 2.2e-18 95.9 64 76.6
CSS0010475 Camellia sinensis var. sinensis HOM05D003212 ORTHO05D003959 6.3e-18 94.4 53 77.4
CSS0011806 Camellia sinensis var. sinensis HOM05D003212 ORTHO05D003959 6.3e-18 94.4 53 77.4
PGSC0003DMG400019620 Solanum tuberosum HOM05D003212 ORTHO05D003959 6.3e-18 94.4 64 73.4
Hma1.2p1_0384F.1_g141010 Hydrangea macrophylla HOM05D003212 ORTHO05D003959 1.1e-17 93.6 64 71.9
Nitab4.5_0000893g0050 Nicotiana tabacum HOM05D003212 ORTHO05D003959 1.1e-17 93.6 64 73.4
Nitab4.5_0001135g0170 Nicotiana tabacum HOM05D003212 ORTHO05D003959 1.1e-17 93.6 64 73.4
Solyc11g068830.2 Solanum lycopersicum HOM05D003212 ORTHO05D003959 1.4e-17 93.2 64 71.9
TWI38G0920 Tripterygium wilfordii HOM05D003212 ORTHO05D003959 1.4e-17 93.2 64 75.0
vmacro12692 Vaccinium macrocarpon HOM05D003212 ORTHO05D003959 1.8e-17 92.8 64 71.9
Ca_18881_v3 Cicer arietinum L. HOM05D003212 ORTHO05D003959 2.4e-17 92.4 64 73.4
Sed0013182 Sechium edule HOM05D003212 ORTHO05D003959 2.4e-17 92.4 64 76.6
arahy.Tifrunner.gnm1.ann1.J24RTT Arachis hypogaea HOM05D003212 ORTHO05D003959 3.1e-17 92.0 64 70.3
MSTRG.20521 Avicennia marina HOM05D003212 ORTHO05D003959 3.1e-17 92.0 64 75.0
Ca_23514_v3 Cicer arietinum L. HOM05D003212 ORTHO05D003959 3.1e-17 92.0 64 71.9
Migut.B01220 Erythranthe guttata HOM05D003212 ORTHO05D003959 3.1e-17 92.0 64 73.4
Glyma.11G154200 Glycine max HOM05D003212 ORTHO05D003959 3.1e-17 92.0 64 71.9
Oeu056551.1 Olea europaea HOM05D003212 ORTHO05D003959 3.1e-17 92.0 64 73.4
Phvul.005G029300 Phaseolus vulgaris HOM05D003212 ORTHO05D003959 3.1e-17 92.0 64 71.9
THA.LOC104824191 Tarenaya hassleriana HOM05D003212 ORTHO05D003959 3.1e-17 92.0 64 73.4
MSTRG.16992 Avicennia marina HOM05D003212 ORTHO05D003959 4.1e-17 91.7 64 71.9
Cc02_g26670 Coffea canephora HOM05D003212 ORTHO05D003959 4.1e-17 91.7 64 71.9
Medtr1g025060 Medicago truncatula HOM05D003212 ORTHO05D003959 5.3e-17 91.3 64 71.9
Aa31LG1G5360 Aethionema arabicum HOM05D003212 ORTHO05D003959 6.9e-17 90.9 64 71.9
Lsat_1_v5_gn_5_157360 Lactuca sativa HOM05D003212 ORTHO05D003959 6.9e-17 90.9 64 67.2
Lj3g0024329 Lotus japonicus HOM05D003212 ORTHO05D003959 6.9e-17 90.9 64 71.9
Lalb_Chr14g0366121 Lupinus albus HOM05D003212 ORTHO05D003959 6.9e-17 90.9 64 70.3
Peaxi162Scf00010g03311 Petunia axillaris HOM05D003212 ORTHO05D003959 6.9e-17 90.9 67 70.1
Peaxi162Scf01010g00217 Petunia axillaris HOM05D003212 ORTHO05D003959 6.9e-17 90.9 64 71.9
Pp3c3_16990 Physcomitrium patens HOM05D003212 ORTHO05D003959 6.9e-17 90.9 64 73.4
Psat5g219440 Pisum sativum HOM05D003212 ORTHO05D003959 6.9e-17 90.9 64 71.9
Atru.chr12.1386 Acer truncatum HOM05D003212 ORTHO05D003959 9.0e-17 90.5 64 71.9
arahy.Tifrunner.gnm1.ann1.28N5NC Arachis hypogaea HOM05D003212 ORTHO05D003959 9.0e-17 90.5 64 68.8
Haze_03071 Corylus avellana HOM05D003212 ORTHO05D003959 9.0e-17 90.5 64 71.9
Rhsim01G0123800 Rhododendron simsii HOM05D003212 ORTHO05D003959 9.0e-17 90.5 53 77.4
SalBow5G0323 Salvia bowleyana HOM05D003212 ORTHO05D003959 9.0e-17 90.5 64 71.9
SalBow5G4173 Salvia bowleyana HOM05D003212 ORTHO05D003959 9.0e-17 90.5 64 71.9
SalBow5G4847 Salvia bowleyana HOM05D003212 ORTHO05D003959 9.0e-17 90.5 64 71.9
ATR0789G118 Amborella trichopoda HOM05D003212 ORTHO05D003959 1.2e-16 90.1 64 71.9
Sopen11g027550 Solanum pennellii HOM05D003212 ORTHO05D003959 1.2e-16 90.1 64 70.3
Aqoxy2G00340 Aquilegia oxysepala HOM05D003212 ORTHO05D003959 1.5e-16 89.7 64 67.2
EL10Ac2g02822 Beta vulgaris HOM05D003212 ORTHO05D003959 1.5e-16 89.7 64 71.9
CANSAT80G2392 Cannabis sativa HOM05D003212 ORTHO05D003959 1.5e-16 89.7 64 71.9
CDE08G1532 Ceratophyllum demersum HOM05D003212 ORTHO05D003959 1.5e-16 89.7 64 68.8
ClCG01G007740 Citrullus lanatus HOM05D003212 ORTHO05D003959 2.0e-16 89.4 64 70.3
MELO3C005122.2 Cucumis melo HOM05D003212 ORTHO05D003959 2.0e-16 89.4 64 70.3
CsaV3_5G024820 Cucumis sativus L. HOM05D003212 ORTHO05D003959 2.0e-16 89.4 64 70.3
Dinv32034 Davidia involucrata HOM05D003212 ORTHO05D003959 2.0e-16 89.4 64 68.8
PGR031G0586 Punica granatum HOM05D003212 ORTHO05D003959 2.0e-16 89.4 64 71.9
Hund15723 Selenicereus undatus HOM05D003212 ORTHO05D003959 2.0e-16 89.4 64 70.3
Gohir.A13G144600 Gossypium hirsutum HOM05D003212 ORTHO05D003959 2.6e-16 89.0 64 68.8
Gohir.D13G149300 Gossypium hirsutum HOM05D003212 ORTHO05D003959 2.6e-16 89.0 64 68.8
Gorai.013G167000 Gossypium raimondii HOM05D003212 ORTHO05D003959 2.6e-16 89.0 64 68.8
Phvul.011G207800 Phaseolus vulgaris HOM05D003212 ORTHO05D003959 2.6e-16 89.0 64 70.3
VMungo1080G0024 Vigna mungo HOM05D003212 ORTHO05D003959 2.6e-16 89.0 64 68.8
Carub.0005s2109 Capsella rubella HOM05D003212 ORTHO05D003959 3.4e-16 88.6 64 71.9
CiPaw.14G006800 Carya illinoinensis HOM05D003212 ORTHO05D003959 3.4e-16 88.6 64 70.3
DCAR_006596 Daucus carota HOM05D003212 ORTHO05D003959 3.4e-16 88.6 55 78.2
Sed0011268 Sechium edule HOM05D003212 ORTHO05D003959 3.4e-16 88.6 64 68.8
VMungo1127G0513 Vigna mungo HOM05D003212 ORTHO05D003959 3.4e-16 88.6 64 68.8
AL5G35520 Arabidopsis lyrata HOM05D003212 ORTHO05D003959 4.5e-16 88.2 64 70.3
AT3G54470 Arabidopsis thaliana HOM05D003212 ORTHO05D003959 4.5e-16 88.2 64 70.3
CDE09G0923 Ceratophyllum demersum HOM05D003212 ORTHO05D003959 4.5e-16 88.2 64 67.2
Lj7A581T52 Lonicera japonica HOM05D003212 ORTHO05D003959 4.5e-16 88.2 64 68.8
Manes.11G004200 Manihot esculenta HOM05D003212 ORTHO05D003959 4.5e-16 88.2 64 68.8
Medtr3g017580 Medicago truncatula HOM05D003212 ORTHO05D003959 4.5e-16 88.2 64 70.3
SalBow5G1158 Salvia bowleyana HOM05D003212 ORTHO05D003959 4.5e-16 88.2 64 70.3
Sp5g07950 Schrenkiella parvula HOM05D003212 ORTHO05D003959 4.5e-16 88.2 64 70.3
TAR369G1042 Trochodendron aralioides HOM05D003212 ORTHO05D003959 4.5e-16 88.2 64 67.2
unitig_26.g9606 Utricularia gibba HOM05D003212 ORTHO05D003959 4.5e-16 88.2 64 68.8
Aqoxy3G03071 Aquilegia oxysepala HOM05D003212 ORTHO05D003959 5.9e-16 87.8 53 73.6
Ciclev10001014m.g Citrus clementina HOM05D003212 ORTHO05D003959 5.9e-16 87.8 64 68.8
Potri.001G026300 Populus trichocarpa HOM05D003212 ORTHO05D003959 5.9e-16 87.8 64 70.3
TPR.G17794 Trifolium pratense HOM05D003212 ORTHO05D003959 5.9e-16 87.8 64 70.3
arahy.Tifrunner.gnm1.ann1.HRMJ8R Arachis hypogaea HOM05D003212 ORTHO05D003959 7.7e-16 87.4 64 68.8
COL.COLO4_09453 Corchorus olitorius HOM05D003212 ORTHO05D003959 7.7e-16 87.4 64 67.2
SGA_v2.0_scaffold124G33627 Striga asiatica HOM05D003212 ORTHO05D003959 7.7e-16 87.4 64 68.8
arahy.Tifrunner.gnm1.ann1.HVGJ4H Arachis hypogaea HOM05D003212 ORTHO05D003959 1.0e-15 87.0 64 68.8
CARHR164370 Cardamine hirsuta HOM05D003212 ORTHO05D003959 1.0e-15 87.0 64 68.8
Migut.N01834 Erythranthe guttata HOM05D003212 ORTHO05D003959 1.0e-15 87.0 64 68.8
Glyma.13G198700 Glycine max HOM05D003212 ORTHO05D003959 1.0e-15 87.0 64 68.8
HanXRQChr01g0008251 Helianthus annuus HOM05D003212 ORTHO05D003959 1.0e-15 87.0 64 68.8
Lj3g0002083 Lotus japonicus HOM05D003212 ORTHO05D003959 1.0e-15 87.0 64 68.8
Nn7g36634 Nelumbo nucifera HOM05D003212 ORTHO05D003959 1.0e-15 87.0 64 65.6
BcaC02g12603 Brassica carinata HOM05D003212 ORTHO05D003959 1.3e-15 86.7 64 68.8
ECA232G0145 Erigeron canadensis HOM05D003212 ORTHO05D003959 1.3e-15 86.7 64 67.2
ECA248G3712 Erigeron canadensis HOM05D003212 ORTHO05D003959 1.3e-15 86.7 64 67.2
Thhalv10010334m.g Eutrema salsugineum HOM05D003212 ORTHO05D003959 1.3e-15 86.7 64 68.8
MCO07G762 Micromonas commoda HOM05D003212 ORTHO05D003959 1.3e-15 86.7 64 67.2
BcaB02g08443 Brassica carinata HOM05D003212 ORTHO05D003959 1.7e-15 86.3 64 67.2
AUR62003805 Chenopodium quinoa HOM05D003212 ORTHO05D003959 1.7e-15 86.3 64 70.3
Sabra01G0019400 Salix brachista HOM05D003212 ORTHO05D003959 1.7e-15 86.3 64 68.8
A07p22130 Brassica napus HOM05D003212 ORTHO05D003959 2.2e-15 85.9 64 67.2
BraA07t29896Z Brassica rapa HOM05D003212 ORTHO05D003959 2.2e-15 85.9 64 67.2
AUR62001997 Chenopodium quinoa HOM05D003212 ORTHO05D003959 2.2e-15 85.9 64 68.8
Gohir.A04G028000 Gossypium hirsutum HOM05D003212 ORTHO05D003959 2.2e-15 85.9 64 65.6
QL04p014524 Quercus lobata HOM05D003212 ORTHO05D003959 2.2e-15 85.9 64 65.6
QL04p014886 Quercus lobata HOM05D003212 ORTHO05D003959 2.2e-15 85.9 64 65.6
SMO259G0031 Selaginella moellendorffii HOM05D003212 ORTHO05D003959 2.2e-15 85.9 64 68.8
SEGI_05174 Sequoiadendron giganteum HOM05D003212 ORTHO05D003959 2.2e-15 85.9 64 65.6
Atru.chr12.1389 Acer truncatum HOM05D003212 ORTHO05D003959 2.9e-15 85.5 64 67.2
Ah.12g062950 Amaranthus hybridus HOM05D003212 ORTHO05D003959 2.9e-15 85.5 64 68.8
PSO384G1532 Papaver somniferum HOM05D003212 ORTHO05D003959 2.9e-15 85.5 64 67.2
Psat0s1718g0040 Pisum sativum HOM05D003212 ORTHO05D003959 2.9e-15 85.5 64 65.6
SGA_v2.0_scaffold232G43508 Striga asiatica HOM05D003212 ORTHO05D003959 2.9e-15 85.5 64 67.2
Thecc.07G075400 Theobroma cacao HOM05D003212 ORTHO05D003959 2.9e-15 85.5 64 65.6
BcaB02g07736 Brassica carinata HOM05D003212 ORTHO05D003959 3.8e-15 85.1 64 67.2
CAN.G745.39 Capsicum annuum HOM05D003212 ORTHO05D003959 3.8e-15 85.1 64 67.2
Duzib213G0398 Durio zibethinus HOM05D003212 ORTHO05D003959 3.8e-15 85.1 64 64.1
Lalb_Chr03g0032831 Lupinus albus HOM05D003212 ORTHO05D003959 3.8e-15 85.1 64 65.6
Mapoly0052s0107 Marchantia polymorpha HOM05D003212 ORTHO05D003959 3.8e-15 85.1 64 65.6
Hund13345 Selenicereus undatus HOM05D003212 ORTHO05D003959 3.8e-15 85.1 64 67.2
BcaC02g09067 Brassica carinata HOM05D003212 ORTHO05D003959 6.5e-15 84.3 64 65.6
BcaC08g44683 Brassica carinata HOM05D003212 ORTHO05D003959 6.5e-15 84.3 64 65.6
A04p05360 Brassica napus HOM05D003212 ORTHO05D003959 6.5e-15 84.3 64 65.6
C04p38050 Brassica napus HOM05D003212 ORTHO05D003959 6.5e-15 84.3 64 65.6
C06p22180 Brassica napus HOM05D003212 ORTHO05D003959 6.5e-15 84.3 64 65.6
BolC4t25379H Brassica oleracea HOM05D003212 ORTHO05D003959 6.5e-15 84.3 64 65.6
BolC6t37404H Brassica oleracea HOM05D003212 ORTHO05D003959 6.5e-15 84.3 64 65.6
BraA04t16236Z Brassica rapa HOM05D003212 ORTHO05D003959 6.5e-15 84.3 64 65.6
Sabra03G0147800 Salix brachista HOM05D003212 ORTHO05D003959 6.5e-15 84.3 64 65.6
Ca_10473_v3 Cicer arietinum L. HOM05D003212 ORTHO05D003959 8.5e-15 84.0 64 64.1
Gohir.D05G360100 Gossypium hirsutum HOM05D003212 ORTHO05D003959 8.5e-15 84.0 64 62.5
Gorai.009G432600 Gossypium raimondii HOM05D003212 ORTHO05D003959 8.5e-15 84.0 64 62.5
HanXRQChr13g0406671 Helianthus annuus HOM05D003212 ORTHO05D003959 8.5e-15 84.0 64 67.2
PSO339G4798 Papaver somniferum HOM05D003212 ORTHO05D003959 8.5e-15 84.0 64 67.2
Potri.003G198501 Populus trichocarpa HOM05D003212 ORTHO05D003959 8.5e-15 84.0 64 65.6
Potri.T125906 Populus trichocarpa HOM05D003212 ORTHO05D003959 8.5e-15 84.0 64 65.6
TPR.G36892 Trifolium pratense HOM05D003212 ORTHO05D003959 8.5e-15 84.0 64 65.6
Duzib268G1229 Durio zibethinus HOM05D003212 ORTHO05D003959 1.1e-14 83.6 64 62.5
AagrBONN_evm.TU.Sc2ySwM_117.3888 Anthoceros agrestis HOM05D003212 ORTHO05D003959 1.9e-14 82.8 64 64.1
Medtr8g038390 Medicago truncatula HOM05D003212 ORTHO05D003959 3.2e-14 82.0 64 67.2
HPP92_003228 Vanilla planifolia HOM05D003212 ORTHO05D003959 3.2e-14 82.0 64 60.9
HPP92_003235 Vanilla planifolia HOM05D003212 ORTHO05D003959 3.2e-14 82.0 64 60.9
Sc11g0006540 Simmondsia chinensis HOM05D003212 ORTHO05D003959 7.2e-14 80.9 64 67.2
PRCOL_00000883 Prasinoderma coloniale HOM05D003212 ORTHO05D003959 9.4e-14 80.5 64 64.1
Zm00001eb140940 Zea mays HOM05D003212 ORTHO05D003959 9.4e-14 80.5 64 65.6
AUR62026849 Chenopodium quinoa HOM05D003212 ORTHO05D003959 1.2e-13 80.1 64 65.6
AUR62037200 Chenopodium quinoa HOM05D003212 ORTHO05D003959 1.2e-13 80.1 64 65.6
MD17G1257300 Malus domestica HOM05D003212 ORTHO05D003959 2.1e-13 79.3 53 75.5
Cre01.g048950 Chlamydomonas reinhardtii HOM05D003212 ORTHO05D003959 2.7e-13 79.0 64 60.9
Pp3c13_16830 Physcomitrium patens HOM05D003212 ORTHO05D003959 3.6e-13 78.6 64 67.2
RcHm_v2.0_Chr5g0023651 Rosa chinensis HOM05D003212 ORTHO05D015659 7.9e-13 77.4 46 82.6
Ca_28375_v3 Cicer arietinum L. HOM05D003212 ORTHO05D003959 1.8e-12 76.3 52 67.3
Ca_30130_v3 Cicer arietinum L. HOM05D003212 ORTHO05D003959 1.8e-12 76.3 52 67.3
RcHm_v2.0_Chr4g0435201 Rosa chinensis HOM05D003212 ORTHO05D015659 2.3e-12 75.9 46 80.4
CBR_g41363 Chara braunii HOM05D003212 ORTHO05D003959 6.7e-12 74.3 52 67.3
SMO181G0021 Selaginella moellendorffii HOM05D003212 ORTHO05D003959 1.1e-11 73.6 58 65.5
Os01g0951200 Oryza sativa ssp. japonica HOM05D003212 ORTHO05D003959 1.5e-11 73.2 64 59.4
FAN06G2858 Fragaria x ananassa HOM05D013275 ORTHO05D015659 2.0e-11 72.8 71 63.4
Atru.chr12.1029 Acer truncatum HOM05D003212 ORTHO05D003959 5.7e-11 71.2 64 59.4
Ciclev10004916m.g Citrus clementina HOM05D003212 ORTHO05D003959 1.8e-09 66.2 64 57.8
FvH4_4g15670 Fragaria vesca HOM05D013275 ORTHO05D003959 2.4e-09 65.9 61 65.6
Os01g0951400 Oryza sativa ssp. japonica HOM05D003212 ORTHO05D003959 1.3e-07 60.1 64 46.9
FAN06G2267 Fragaria x ananassa HOM05D013275 ORTHO05D015659 2.5e-06 55.8 49 69.4
Zm00001eb140930 Zea mays HOM05D003212 ORTHO05D003959 2.5e-06 55.8 50 58.0
FAN06G1449 Fragaria x ananassa HOM05D013275 ORTHO05D198821 3.2e-06 55.5 27 96.3
SMO250G0012 Selaginella moellendorffii HOM05D000515 ORTHO05D001911 3.2e-06 55.5 64 46.9


User provided reference genes

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