Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_2g41350 Fragaria vesca HOM05D007019 ORTHO05D008398 3.3e-270 934.5 489 100.0
FAN27G2994 Fragaria x ananassa HOM05D007019 ORTHO05D008398 4.8e-253 877.5 481 96.0
FAN15G0718 Fragaria x ananassa HOM05D007019 ORTHO05D008398 3.3e-241 838.2 508 89.8
RcHm_v2.0_Chr6g0299181 Rosa chinensis HOM05D007019 ORTHO05D008398 2.4e-236 822.0 494 88.1
Prupe.1G396900 Prunus persica HOM05D007019 ORTHO05D008398 1.2e-211 740.0 500 80.0
CiPaw.07G232900 Carya illinoinensis HOM05D007019 ORTHO05D008398 4.6e-195 684.9 497 73.2
Manes.16G132200 Manihot esculenta HOM05D007019 ORTHO05D008398 4.8e-192 674.9 497 73.0
Cfa013011 Carpinus fangiana HOM05D007019 ORTHO05D008398 1.7e-189 666.4 500 72.0
arahy.Tifrunner.gnm1.ann1.MG10WM Arachis hypogaea HOM05D007019 ORTHO05D008398 2.5e-185 652.5 494 70.0
arahy.Tifrunner.gnm1.ann1.SS16UG Arachis hypogaea HOM05D007019 ORTHO05D008398 2.8e-184 649.0 494 70.2
Potri.018G016200 Populus trichocarpa HOM05D007019 ORTHO05D008398 4.1e-183 645.2 493 70.2
Lj6g0025581 Lotus japonicus HOM05D007019 ORTHO05D008398 1.2e-182 643.7 497 70.0
Eucgr.C04032 Eucalyptus grandis HOM05D007019 ORTHO05D008398 3.8e-181 638.6 494 69.0
Gorai.009G064200 Gossypium raimondii HOM05D007019 ORTHO05D008398 2.5e-180 636.0 499 69.1
Duzib168G1437 Durio zibethinus HOM05D007019 ORTHO05D008398 4.2e-180 635.2 502 69.7
CANSAT25G0065 Cannabis sativa HOM05D007019 ORTHO05D008398 7.2e-180 634.4 496 68.8
Thecc.09G013400 Theobroma cacao HOM05D007019 ORTHO05D008398 4.6e-179 631.7 500 68.6
CSS0016918 Camellia sinensis var. sinensis HOM05D007019 ORTHO05D008398 5.1e-178 628.2 496 67.9
CSS0023374 Camellia sinensis var. sinensis HOM05D007019 ORTHO05D008398 5.1e-178 628.2 496 67.9
QL02p018053 Quercus lobata HOM05D007019 ORTHO05D008398 1.1e-177 627.1 496 68.8
Atru.chr7.2574 Acer truncatum HOM05D007019 ORTHO05D008398 1.9e-177 626.3 494 67.8
Hma1.2p1_0737F.1_g210790 Hydrangea macrophylla HOM05D007019 ORTHO05D008398 1.9e-177 626.3 501 69.7
PGR044G2245 Punica granatum HOM05D007019 ORTHO05D008398 2.5e-177 625.9 500 67.6
Lj7A737G40 Lonicera japonica HOM05D007019 ORTHO05D008398 3.3e-177 625.5 510 65.9
Actinidia14141 Actinidia chinensis HOM05D007019 ORTHO05D008398 1.3e-176 623.6 497 67.4
Psat5g174160 Pisum sativum HOM05D007019 ORTHO05D008398 2.8e-176 622.5 497 67.0
TWI32G0429 Tripterygium wilfordii HOM05D007019 ORTHO05D008398 2.8e-176 622.5 496 67.5
Rhsim02G0217600 Rhododendron simsii HOM05D007019 ORTHO05D008398 1.1e-175 620.5 495 67.5
Lalb_Chr15g0081591 Lupinus albus HOM05D007019 ORTHO05D008398 1.4e-175 620.2 496 68.5
Gohir.D05G063200 Gossypium hirsutum HOM05D007019 ORTHO05D008398 1.2e-174 617.1 499 67.7
Glyma.18G091000 Glycine max HOM05D007019 ORTHO05D008398 2.6e-174 615.9 496 68.1
Medtr3g053700 Medicago truncatula HOM05D007019 ORTHO05D008398 2.6e-174 615.9 495 66.9
DCAR_003030 Daucus carota HOM05D007019 ORTHO05D008398 3.4e-174 615.5 496 66.3
COL.COLO4_18972 Corchorus olitorius HOM05D007019 ORTHO05D008398 5.9e-174 614.8 501 67.9
Cc00_g05220 Coffea canephora HOM05D007019 ORTHO05D008398 1.4e-172 610.1 494 67.0
Gohir.A05G061000 Gossypium hirsutum HOM05D007019 ORTHO05D008398 9.4e-172 607.4 499 66.7
Glyma.08G321000 Glycine max HOM05D007019 ORTHO05D008398 2.1e-171 606.3 498 67.1
Aqoxy7G03288 Aquilegia oxysepala HOM05D007019 ORTHO05D008398 3.9e-170 602.1 499 64.3
Ciclev10008089m.g Citrus clementina HOM05D007019 ORTHO05D008398 1.3e-168 597.0 498 65.1
MSTRG.1627 Avicennia marina HOM05D007019 ORTHO05D008398 1.7e-168 596.7 494 64.4
MBI14_g16432_MAGBIO Magnolia biondii HOM05D007019 ORTHO05D008398 1.4e-167 593.6 504 65.1
Sabra18G0019700 Salix brachista HOM05D007019 ORTHO05D008398 1.5e-166 590.1 519 63.6
TPR.G32253 Trifolium pratense HOM05D007019 ORTHO05D008398 1.5e-166 590.1 497 64.2
VMungo0540G1233 Vigna mungo HOM05D007019 ORTHO05D008398 5.0e-165 585.1 498 64.9
Ca_26389_v3 Cicer arietinum L. HOM05D007019 ORTHO05D008398 1.9e-164 583.2 496 64.7
PSO731G0070 Papaver somniferum HOM05D007019 ORTHO05D008398 3.2e-164 582.4 506 63.2
PSO210G0129 Papaver somniferum HOM05D007019 ORTHO05D008398 5.5e-164 581.6 514 61.7
Sed0002524 Sechium edule HOM05D007019 ORTHO05D008398 4.7e-163 578.6 505 63.0
Nn6g33490 Nelumbo nucifera HOM05D007019 ORTHO05D008398 1.0e-162 577.4 513 61.2
Oeu021907.1 Olea europaea HOM05D007019 ORTHO05D008398 1.0e-162 577.4 494 63.0
ClCG08G013800 Citrullus lanatus HOM05D007019 ORTHO05D008398 2.0e-161 573.2 500 63.6
MELO3C011312.2 Cucumis melo HOM05D007019 ORTHO05D008398 3.3e-161 572.4 500 63.0
Solyc08g068820.3 Solanum lycopersicum HOM05D007019 ORTHO05D008398 1.3e-160 570.5 497 61.6
PGSC0003DMG400014784 Solanum tuberosum HOM05D007019 ORTHO05D008398 1.3e-160 570.5 497 61.2
Migut.E01445 Erythranthe guttata HOM05D007019 ORTHO05D008398 1.4e-159 567.0 495 62.8
HanXRQChr03g0084841 Helianthus annuus HOM05D007019 ORTHO05D008398 1.8e-159 566.6 522 62.5
Phvul.006G047900 Phaseolus vulgaris HOM05D007019 ORTHO05D008398 7.7e-158 561.2 498 63.3
CsaV3_2G032590 Cucumis sativus L. HOM05D007019 ORTHO05D008398 2.9e-157 559.3 500 62.2
unitig_46.g18223 Utricularia gibba HOM05D007019 ORTHO05D008398 5.0e-157 558.5 491 60.7
Hund25606 Selenicereus undatus HOM05D007019 ORTHO05D008398 1.1e-156 557.4 521 59.7
Lsat_1_v5_gn_6_78060 Lactuca sativa HOM05D007019 ORTHO05D008398 1.2e-155 553.9 505 61.8
CAN.G273.24 Capsicum annuum HOM05D007019 ORTHO05D008398 1.4e-154 550.4 496 60.1
CDE04G0815 Ceratophyllum demersum HOM05D007019 ORTHO05D008398 5.2e-154 548.5 510 58.4
Cpa.g.sc148.46 Carica papaya HOM05D007019 ORTHO05D008398 8.8e-154 547.7 499 60.9
Sp4g03850 Schrenkiella parvula HOM05D007019 ORTHO05D008398 1.1e-151 540.8 509 59.7
EL10Ac2g02454 Beta vulgaris HOM05D007019 ORTHO05D008398 1.8e-151 540.0 550 56.5
THA.LOC104819948 Tarenaya hassleriana HOM05D007019 ORTHO05D008398 2.7e-150 536.2 518 57.3
Carub.0004s0445 Capsella rubella HOM05D007019 ORTHO05D008398 1.3e-149 533.9 507 59.0
SGA_v2.0_scaffold169G38600 Striga asiatica HOM05D007019 ORTHO05D008398 2.5e-148 529.6 506 59.1
ECA240G4302 Erigeron canadensis HOM05D007019 ORTHO05D008398 3.2e-148 529.3 513 57.7
Aa31LG7G11570 Aethionema arabicum HOM05D007019 ORTHO05D008398 2.7e-147 526.2 510 58.2
Zm00001eb257650 Zea mays HOM05D007019 ORTHO05D008398 6.8e-146 521.5 505 57.8
CARHR294580 Cardamine hirsuta HOM05D007019 ORTHO05D008398 2.6e-145 519.6 510 57.5
AT2G24830 Arabidopsis thaliana HOM05D007019 ORTHO05D008398 3.4e-145 519.2 505 57.4
ATR0580G102 Amborella trichopoda HOM05D007019 ORTHO05D008398 5.7e-145 518.5 508 57.1
Thhalv10000137m.g Eutrema salsugineum HOM05D007019 ORTHO05D008398 1.1e-143 514.2 512 57.0
Sc23g0006120 Simmondsia chinensis HOM05D007019 ORTHO05D008398 9.1e-143 511.1 517 56.3
AUR62032443 Chenopodium quinoa HOM05D007019 ORTHO05D008398 2.7e-142 509.6 527 55.2
Nitab4.5_0000406g0110 Nicotiana tabacum HOM05D007019 ORTHO05D008398 7.2e-140 501.5 494 57.7
AUR62024776 Chenopodium quinoa HOM05D007019 ORTHO05D008398 9.4e-140 501.1 544 54.0
AL4G15870 Arabidopsis lyrata HOM05D007019 ORTHO05D008398 3.6e-139 499.2 506 55.3
BraA09t41004Z Brassica rapa HOM05D007019 ORTHO05D008398 1.4e-138 497.3 507 55.8
Sopen08g022560 Solanum pennellii HOM05D007019 ORTHO05D008398 2.0e-137 493.4 405 62.2
HPP92_010745 Vanilla planifolia HOM05D007019 ORTHO05D008398 2.0e-137 493.4 511 54.8
A09p56030 Brassica napus HOM05D007019 ORTHO05D008398 4.4e-137 492.3 502 56.0
A09p56090 Brassica napus HOM05D007019 ORTHO05D008398 3.7e-136 489.2 506 55.3
MD08G1051900 Malus domestica HOM05D007019 ORTHO05D008398 6.3e-136 488.4 359 74.4
vmacro11274 Vaccinium macrocarpon HOM05D007019 ORTHO05D008398 1.1e-132 477.6 494 57.9
Nitab4.5_0012106g0030 Nicotiana tabacum HOM05D007019 ORTHO05D008398 2.5e-132 476.5 493 55.6
C08p39020 Brassica napus HOM05D007019 ORTHO05D008398 3.3e-132 476.1 504 54.0
BolC8t51475H Brassica oleracea HOM05D007019 ORTHO05D008398 9.5e-132 474.6 504 53.8
TAR636G0280 Trochodendron aralioides HOM05D007019 ORTHO05D008398 3.7e-128 462.6 343 67.9
BcaC07g40903 Brassica carinata HOM05D007019 ORTHO05D008398 1.2e-126 457.6 494 53.4
SEGI_04420 Sequoiadendron giganteum HOM05D007019 ORTHO05D008398 1.2e-121 441.0 512 50.6
Dinv03401 Davidia involucrata HOM05D007019 ORTHO05D008398 9.2e-119 431.4 364 67.6
Hma1.2p1_0737F.1_g210800 Hydrangea macrophylla HOM05D007019 ORTHO05D008398 5.4e-111 405.6 331 70.1
Pp3c21_5730 Physcomitrium patens HOM05D007019 ORTHO05D008398 1.1e-108 397.9 521 46.3
SMO116G0382 Selaginella moellendorffii HOM05D007019 ORTHO05D008398 1.2e-102 377.9 502 47.6
Mapoly0067s0020 Marchantia polymorpha HOM05D007019 ORTHO05D008398 6.6e-101 372.1 513 44.8
SHI21092 Sapria himalayana HOM05D007019 ORTHO05D008398 2.1e-94 350.5 575 41.2
Dinv10229 Davidia involucrata HOM05D007019 ORTHO05D008398 5.4e-87 325.9 353 58.1
GSVIVG01036005001 Vitis vinifera HOM05D007019 ORTHO05D008398 1.6e-67 261.2 189 68.8
AagrBONN_evm.TU.Sc2ySwM_117.1463 Anthoceros agrestis HOM05D007019 ORTHO05D008398 1.9e-60 237.7 361 43.8
CBR_g30106 Chara braunii HOM05D007019 ORTHO05D008398 1.4e-58 231.5 561 34.0
SalBow6G1623 Salvia bowleyana HOM05D007019 ORTHO05D008398 4.2e-47 193.4 187 57.8
SMO116G0105 Selaginella moellendorffii HOM05D007019 ORTHO05D008398 1.7e-35 154.8 321 39.3
Peaxi162Scf01419g00115 Petunia axillaris HOM05D007019 ORTHO05D008398 5.3e-34 149.8 146 52.1
SMO269G0003 Selaginella moellendorffii HOM05D007019 ORTHO05D008398 2.8e-27 127.5 323 36.5
Os02g0793000 Oryza sativa ssp. japonica HOM05D007019 ORTHO05D008398 2.0e-25 121.3 106 55.7
AagrBONN_evm.TU.Sc2ySwM_117.1462 Anthoceros agrestis HOM05D007019 ORTHO05D008398 4.4e-20 103.6 150 44.7
ECA234G1322 Erigeron canadensis HOM05D004574 ORTHO05D005612 1.5e-07 62.0 49 57.1
Lalb_Chr07g0179541 Lupinus albus HOM05D004574 ORTHO05D005612 2.5e-07 61.2 55 49.1
CSS0028433 Camellia sinensis var. sinensis HOM05D004574 ORTHO05D005612 3.3e-07 60.8 53 52.8
MD02G1012700 Malus domestica HOM05D004574 ORTHO05D005612 3.3e-07 60.8 65 43.1
Lsat_1_v5_gn_5_90461 Lactuca sativa HOM05D004574 ORTHO05D005612 4.3e-07 60.5 49 57.1
EL10Ac8g18810 Beta vulgaris HOM05D004574 ORTHO05D005612 5.6e-07 60.1 86 46.5
CANSAT11G2415 Cannabis sativa HOM05D004574 ORTHO05D005612 5.6e-07 60.1 65 44.6
DCAR_017762 Daucus carota HOM05D004574 ORTHO05D005612 5.6e-07 60.1 53 50.9
SEGI_33529 Sequoiadendron giganteum HOM05D004574 ORTHO05D005612 9.5e-07 59.3 60 46.7
DCAR_014931 Daucus carota HOM05D004574 ORTHO05D005612 1.2e-06 58.9 53 50.9
Cre07.g355700 Chlamydomonas reinhardtii HOM05D007019 ORTHO05D008398 1.6e-06 58.5 256 25.0
Nitab4.5_0001151g0100 Nicotiana tabacum HOM05D004574 ORTHO05D005612 1.6e-06 58.5 54 55.6
Nitab4.5_0001671g0130 Nicotiana tabacum HOM05D004574 ORTHO05D005612 1.6e-06 58.5 54 55.6
HanXRQChr12g0357011 Helianthus annuus HOM05D004574 ORTHO05D005612 2.1e-06 58.2 46 56.5
Oeu040778.1 Olea europaea HOM05D004574 ORTHO05D005612 2.1e-06 58.2 50 56.0
Aqoxy7G03519 Aquilegia oxysepala HOM05D004574 ORTHO05D005612 2.8e-06 57.8 54 51.9
FAN23G1466 Fragaria x ananassa HOM05D004574 ORTHO05D005612 3.6e-06 57.4 53 47.2
Manes.14G139500 Manihot esculenta HOM05D004574 ORTHO05D005612 3.6e-06 57.4 46 56.5
Sopen07g003110 Solanum pennellii HOM05D004574 ORTHO05D005612 3.6e-06 57.4 68 45.6
Atru.chr7.229_Atru.chr7.228 Acer truncatum HOM05D004574 ORTHO05D005612 4.7e-06 57.0 46 54.3
Lalb_Chr12g0198521 Lupinus albus HOM05D004574 ORTHO05D005612 4.7e-06 57.0 46 54.3
Solyc07g007040.4 Solanum lycopersicum HOM05D004574 ORTHO05D005612 4.7e-06 57.0 59 47.5
Zm00001eb028250 Zea mays HOM05D004574 ORTHO05D005612 4.7e-06 57.0 56 46.4
Lj9A709T23 Lonicera japonica HOM05D004574 ORTHO05D005612 6.2e-06 56.6 55 47.3
MD15G1158500 Malus domestica HOM05D004574 ORTHO05D005612 6.2e-06 56.6 55 47.3
HPP92_005314 Vanilla planifolia HOM05D004574 ORTHO05D005612 6.2e-06 56.6 69 37.7
HPP92_005340 Vanilla planifolia HOM05D004574 ORTHO05D005612 6.2e-06 56.6 69 37.7
arahy.Tifrunner.gnm1.ann1.J06XH2 Arachis hypogaea HOM05D004574 ORTHO05D005612 8.0e-06 56.2 68 45.6
unitig_0.g517 Utricularia gibba HOM05D004574 ORTHO05D005612 8.0e-06 56.2 54 48.1


User provided reference genes

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