Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_2g41250 Fragaria vesca HOM05D001424 ORTHO05D001315 8.7e-41 169.9 85 100.0
FvH4_2g41261 Fragaria vesca HOM05D001424 ORTHO05D001315 2.8e-15 85.1 51 78.4
RcHm_v2.0_Chr6g0299251 Rosa chinensis HOM05D001424 ORTHO05D001315 3.1e-14 81.6 51 74.5
Prupe.1G396100 Prunus persica HOM05D001424 ORTHO05D001315 1.0e-12 76.6 73 56.2
MELO3C011308.2 Cucumis melo HOM05D001424 ORTHO05D001315 5.0e-12 74.3 51 64.7
CsaV3_2G032550 Cucumis sativus L. HOM05D001424 ORTHO05D001315 5.0e-12 74.3 51 64.7
MD15G1042800 Malus domestica HOM05D001424 ORTHO05D001315 1.4e-11 72.8 73 52.1
Lj7P737T30 Lonicera japonica HOM05D001424 ORTHO05D001315 2.5e-11 72.0 51 62.7
ClCG08G013770 Citrullus lanatus HOM05D001424 ORTHO05D001315 3.2e-11 71.6 51 64.7
Lj1g0019248 Lotus japonicus HOM05D001424 ORTHO05D001315 3.2e-11 71.6 51 64.7
PGR044G1619 Punica granatum HOM05D001424 ORTHO05D001315 4.2e-11 71.2 73 52.1
Sed0019993 Sechium edule HOM05D001424 ORTHO05D001315 4.2e-11 71.2 51 62.7
Sed0026490 Sechium edule HOM05D001424 ORTHO05D001315 7.2e-11 70.5 51 62.7
QL02p018471 Quercus lobata HOM05D001424 ORTHO05D001315 1.6e-10 69.3 51 60.8
VMungo1309G1013 Vigna mungo HOM05D001424 ORTHO05D001315 2.1e-10 68.9 51 60.8
CDE05G1296 Ceratophyllum demersum HOM05D000653 ORTHO05D001315 2.7e-10 68.6 82 47.6
GSVIVG01035991001 Vitis vinifera HOM05D001424 ORTHO05D001315 2.7e-10 68.6 51 58.8
CSS0034266 Camellia sinensis var. sinensis HOM05D001424 ORTHO05D001315 3.6e-10 68.2 51 58.8
Glyma.06G060400 Glycine max HOM05D001424 ORTHO05D001315 3.6e-10 68.2 51 60.8
Cpa.g.sc148.36 Carica papaya HOM05D001424 ORTHO05D001315 4.6e-10 67.8 51 60.8
COL.COLO4_18980 Corchorus olitorius HOM05D000039 ORTHO05D009263 4.6e-10 67.8 60 51.7
Eucgr.C04037 Eucalyptus grandis HOM05D001424 ORTHO05D001315 4.6e-10 67.8 51 58.8
Phvul.009G086200 Phaseolus vulgaris HOM05D001424 ORTHO05D001315 4.6e-10 67.8 51 58.8
TPR.G39837 Trifolium pratense HOM05D001424 ORTHO05D001315 4.6e-10 67.8 50 60.0
TWI34G0997 Tripterygium wilfordii HOM05D001424 ORTHO05D001315 4.6e-10 67.8 54 55.6
Glyma.04G060000 Glycine max HOM05D001424 ORTHO05D001315 7.9e-10 67.0 51 58.8
Nitab4.5_0003389g0030 Nicotiana tabacum HOM05D001424 ORTHO05D001315 7.9e-10 67.0 50 58.0
Atru.chr7.2546 Acer truncatum HOM05D001424 ORTHO05D001315 1.0e-09 66.6 51 58.8
Medtr3g105860 Medicago truncatula HOM05D001424 ORTHO05D001315 1.0e-09 66.6 49 61.2
Haze_21385 Corylus avellana HOM05D001424 ORTHO05D001315 1.4e-09 66.2 51 56.9
DCAR_003016 Daucus carota HOM05D001424 ORTHO05D001315 1.4e-09 66.2 51 56.9
Psat5g033600 Pisum sativum HOM05D001424 ORTHO05D001315 1.4e-09 66.2 49 61.2
TAR625G0080 Trochodendron aralioides HOM05D001424 ORTHO05D001315 1.4e-09 66.2 51 58.8
Cfa013026 Carpinus fangiana HOM05D001424 ORTHO05D001315 1.8e-09 65.9 51 56.9
Thhalv10000388m.g Eutrema salsugineum HOM05D001424 ORTHO05D001315 1.8e-09 65.9 73 47.9
Potri.018G016900 Populus trichocarpa HOM05D001424 ORTHO05D001315 1.8e-09 65.9 51 56.9
SEGI_38520 Sequoiadendron giganteum HOM05D001424 ORTHO05D001315 1.8e-09 65.9 51 58.8
Lalb_Chr08g0244461 Lupinus albus HOM05D001424 ORTHO05D001315 2.3e-09 65.5 55 56.4
Nn8g40093 Nelumbo nucifera HOM05D001424 ORTHO05D001315 2.3e-09 65.5 50 60.0
Sabra06G0208800 Salix brachista HOM05D001424 ORTHO05D001315 2.3e-09 65.5 51 56.9
Nitab4.5_0006784g0030 Nicotiana tabacum HOM05D001424 ORTHO05D001315 3.0e-09 65.1 50 56.0
Oeu006859.1 Olea europaea HOM05D003307 ORTHO05D003798 3.0e-09 65.1 50 56.0
Oeu048543.1 Olea europaea HOM05D001424 ORTHO05D001315 3.0e-09 65.1 50 56.0
Oeu048544.1 Olea europaea HOM05D001424 ORTHO05D001315 3.0e-09 65.1 50 56.0
Oeu060654.1 Olea europaea HOM05D001424 ORTHO05D001315 3.0e-09 65.1 50 56.0
Carub.0004s0450 Capsella rubella HOM05D001424 ORTHO05D001315 3.9e-09 64.7 73 46.6
Ciclev10010015m.g Citrus clementina HOM05D001424 ORTHO05D001315 3.9e-09 64.7 51 52.9
Pp3c1_15400 Physcomitrium patens HOM05D001424 ORTHO05D001315 3.9e-09 64.7 51 54.9
THA.LOC104819950 Tarenaya hassleriana HOM05D001424 ORTHO05D001315 3.9e-09 64.7 51 56.9
BolC4t27020H Brassica oleracea HOM05D001424 ORTHO05D001315 5.1e-09 64.3 73 46.6
Ca_15785_v3 Cicer arietinum L. HOM05D001424 ORTHO05D001315 5.1e-09 64.3 49 57.1
Duzib187G0138 Durio zibethinus HOM05D001424 ORTHO05D001315 5.1e-09 64.3 51 56.9
Potri.006G266200 Populus trichocarpa HOM05D001424 ORTHO05D001315 5.1e-09 64.3 51 56.9
Rhsim02G0216500 Rhododendron simsii HOM05D001424 ORTHO05D001315 5.1e-09 64.3 51 52.9
Aqoxy7G03323 Aquilegia oxysepala HOM05D001424 ORTHO05D001315 6.7e-09 63.9 51 54.9
AT2G24940 Arabidopsis thaliana HOM05D001424 ORTHO05D001315 6.7e-09 63.9 73 45.2
AUR62024789 Chenopodium quinoa HOM05D001424 ORTHO05D001315 6.7e-09 63.9 51 52.9
AUR62032432 Chenopodium quinoa HOM05D001424 ORTHO05D001315 6.7e-09 63.9 51 52.9
PSO063G1642 Papaver somniferum HOM05D001424 ORTHO05D001315 6.7e-09 63.9 50 56.0
PSO782G4902 Papaver somniferum HOM05D001424 ORTHO05D001315 6.7e-09 63.9 50 56.0
Sp4g03930 Schrenkiella parvula HOM05D001424 ORTHO05D001315 6.7e-09 63.9 73 46.6
ATR0580G335 Amborella trichopoda HOM05D001424 ORTHO05D001315 8.8e-09 63.5 51 56.9
AL4G16000 Arabidopsis lyrata HOM05D001424 ORTHO05D001315 8.8e-09 63.5 73 45.2
BcaB06g28021 Brassica carinata HOM05D001424 ORTHO05D001315 8.8e-09 63.5 73 45.2
CAN.G201.39 Capsicum annuum HOM05D001424 ORTHO05D001315 8.8e-09 63.5 50 56.0
ECA246G4390 Erigeron canadensis HOM05D001424 ORTHO05D001315 8.8e-09 63.5 50 54.0
Ah.12g060650 Amaranthus hybridus HOM05D001424 ORTHO05D001315 1.1e-08 63.2 51 52.9
Manes.16G131600 Manihot esculenta HOM05D001424 ORTHO05D001315 1.1e-08 63.2 51 51.0
unitig_85.g27162 Utricularia gibba HOM05D001424 ORTHO05D001315 1.1e-08 63.2 50 54.0
EL10Ac2g02481 Beta vulgaris HOM05D001424 ORTHO05D001315 1.5e-08 62.8 56 48.2
BcaC02g08394 Brassica carinata HOM05D001424 ORTHO05D001315 1.5e-08 62.8 73 45.2
A04p19290 Brassica napus HOM05D001424 ORTHO05D001315 1.5e-08 62.8 73 45.2
C04p54750 Brassica napus HOM05D001424 ORTHO05D001315 1.5e-08 62.8 73 45.2
BraA04t17526Z Brassica rapa HOM05D001424 ORTHO05D001315 1.5e-08 62.8 73 45.2
Peaxi162Scf00136g00128 Petunia axillaris HOM05D001424 ORTHO05D001315 1.5e-08 62.8 50 52.0
ClCG08G013780 Citrullus lanatus HOM05D001424 ORTHO05D001315 1.9e-08 62.4 51 52.9
CARHR116770 Cardamine hirsuta HOM05D001424 ORTHO05D001315 4.3e-08 61.2 73 43.8
Lsat_1_v5_gn_3_22660 Lactuca sativa HOM05D001424 ORTHO05D001315 4.3e-08 61.2 72 40.3
unitig_578.g16603 Utricularia gibba HOM05D001424 ORTHO05D001315 4.3e-08 61.2 50 52.0
CiPaw.07G231800 Carya illinoinensis HOM05D001424 ORTHO05D001315 5.7e-08 60.8 68 42.6
CsaV3_2G032560 Cucumis sativus L. HOM05D001424 ORTHO05D001315 5.7e-08 60.8 51 54.9
Duzib168G0570 Durio zibethinus HOM05D001424 ORTHO05D001315 5.7e-08 60.8 51 52.9
Lj7C741T11 Lonicera japonica HOM05D001424 ORTHO05D001315 5.7e-08 60.8 49 55.1
Thecc.09G012600 Theobroma cacao HOM05D001424 ORTHO05D001315 5.7e-08 60.8 51 52.9
MELO3C011309.2 Cucumis melo HOM05D001424 ORTHO05D001315 7.4e-08 60.5 51 54.9
Gohir.D13G187300 Gossypium hirsutum HOM05D001424 ORTHO05D001315 7.4e-08 60.5 51 52.9
Gorai.010G244800 Gossypium raimondii HOM05D001424 ORTHO05D001315 7.4e-08 60.5 51 52.9
HanXRQChr17g0536361 Helianthus annuus HOM05D001424 ORTHO05D001315 7.4e-08 60.5 50 50.0
PGSC0003DMG400011235 Solanum tuberosum HOM05D001424 ORTHO05D001315 7.4e-08 60.5 50 52.0
PGSC0003DMG400014836 Solanum tuberosum HOM05D001424 ORTHO05D001315 7.4e-08 60.5 50 52.0
Gohir.A13G179200 Gossypium hirsutum HOM05D001424 ORTHO05D001315 1.3e-07 59.7 51 51.0
Os02g0793700 Oryza sativa ssp. japonica HOM05D001424 ORTHO05D001315 1.3e-07 59.7 38 65.8
SGA_v2.0_scaffold4G02161 Striga asiatica HOM05D001424 ORTHO05D001315 1.7e-07 59.3 50 50.0
HPP92_018550 Vanilla planifolia HOM05D001424 ORTHO05D001315 1.7e-07 59.3 42 61.9
Aa31sc83G20 Aethionema arabicum HOM05D001424 ORTHO05D001315 2.2e-07 58.9 72 43.1
SGA_v2.0_scaffold169G38598 Striga asiatica HOM05D001424 ORTHO05D001315 2.2e-07 58.9 50 50.0
Cc00_g24600 Coffea canephora HOM05D001424 ORTHO05D001315 2.8e-07 58.5 50 52.0
Sopen08g010070 Solanum pennellii HOM05D001424 ORTHO05D001315 2.8e-07 58.5 50 50.0
Zm00001eb257670 Zea mays HOM05D001424 ORTHO05D001315 2.8e-07 58.5 38 65.8
Migut.E01442 Erythranthe guttata HOM05D001424 ORTHO05D001315 3.7e-07 58.2 50 50.0
Solyc08g029160.1 Solanum lycopersicum HOM05D001424 ORTHO05D001315 3.7e-07 58.2 50 50.0
vmacro15548 Vaccinium macrocarpon HOM05D001424 ORTHO05D001315 4.8e-07 57.8 59 47.5
Mapoly0146s0039 Marchantia polymorpha HOM05D001424 ORTHO05D001315 8.2e-07 57.0 55 47.3
Sc06g0000330 Simmondsia chinensis HOM05D001424 ORTHO05D001315 1.1e-06 56.6 51 47.1
SEGI_06574 Sequoiadendron giganteum HOM05D001424 ORTHO05D001315 2.4e-06 55.5 34 70.6
AagrBONN_evm.TU.Sc2ySwM_340.217 Anthoceros agrestis HOM05D001424 ORTHO05D001315 5.3e-06 54.3 50 46.0
Dinv01904 Davidia involucrata HOM05D001424 ORTHO05D001315 5.3e-06 54.3 45 53.3
Duzib205G0157 Durio zibethinus HOM05D001424 ORTHO05D001315 6.9e-06 53.9 51 47.1


User provided reference genes

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