Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_2g41220 Fragaria vesca HOM05D007008 ORTHO05D008622 4.1e-53 211.1 103 100.0
FAN15G2831 Fragaria x ananassa HOM05D000756 ORTHO05D008622 5.9e-52 207.2 103 97.1
FAN27G1693 Fragaria x ananassa HOM05D007008 ORTHO05D008622 5.9e-52 207.2 103 97.1
RcHm_v2.0_Chr6g0299291 Rosa chinensis HOM05D007008 ORTHO05D008622 1.3e-51 206.1 103 96.1
Prupe.1G395400 Prunus persica HOM05D007008 ORTHO05D008622 1.1e-50 203.0 103 95.1
MD15G1042200 Malus domestica HOM05D007008 ORTHO05D008622 1.6e-49 199.1 103 93.2
CANSAT25G2981 Cannabis sativa HOM05D007008 ORTHO05D008622 3.6e-49 198.0 103 90.3
MD08G1054800 Malus domestica HOM05D007008 ORTHO05D008622 4.7e-49 197.6 103 92.2
QL02p018585 Quercus lobata HOM05D007008 ORTHO05D008622 1.0e-48 196.4 102 91.2
Ciclev10009999m.g Citrus clementina HOM05D007008 ORTHO05D008622 2.3e-48 195.3 103 89.3
Gohir.D06G104200 Gossypium hirsutum HOM05D007008 ORTHO05D008622 3.1e-48 194.9 103 88.3
CiPaw.08G005100 Carya illinoinensis HOM05D007008 ORTHO05D008622 4.0e-48 194.5 103 90.3
MSTRG.13965 Avicennia marina HOM05D007008 ORTHO05D008622 5.2e-48 194.1 103 88.3
Gohir.A06G102300 Gossypium hirsutum HOM05D007008 ORTHO05D008622 8.9e-48 193.4 103 87.4
Rhsim02G0211800 Rhododendron simsii HOM05D007008 ORTHO05D008622 8.9e-48 193.4 103 87.4
Manes.16G130900 Manihot esculenta HOM05D007008 ORTHO05D008622 2.6e-47 191.8 103 87.4
Duzib187G1435 Durio zibethinus HOM05D007008 ORTHO05D008622 3.4e-47 191.4 103 86.4
Thecc.09G014400 Theobroma cacao HOM05D007008 ORTHO05D008622 3.4e-47 191.4 103 86.4
Manes.03G007600 Manihot esculenta HOM05D007008 ORTHO05D008622 5.8e-47 190.7 103 87.4
Nn2g14020 Nelumbo nucifera HOM05D007008 ORTHO05D008622 5.8e-47 190.7 101 89.1
CAN.G906.10 Capsicum annuum HOM05D007008 ORTHO05D008622 7.5e-47 190.3 100 90.0
Duzib168G0569 Durio zibethinus HOM05D007008 ORTHO05D008622 7.5e-47 190.3 103 86.4
TWI34G0293 Tripterygium wilfordii HOM05D007008 ORTHO05D008622 7.5e-47 190.3 103 86.4
Duzib150G0558 Durio zibethinus HOM05D007008 ORTHO05D008622 9.8e-47 189.9 103 85.4
Rhsim02G0210500 Rhododendron simsii HOM05D007008 ORTHO05D008622 9.8e-47 189.9 112 83.0
Solyc08g006700.3 Solanum lycopersicum HOM05D007008 ORTHO05D008622 1.3e-46 189.5 101 88.1
PGSC0003DMG400026283 Solanum tuberosum HOM05D007008 ORTHO05D008622 1.3e-46 189.5 101 88.1
Nn8g40044 Nelumbo nucifera HOM05D007008 ORTHO05D008622 2.2e-46 188.7 101 88.1
Eucgr.C04041 Eucalyptus grandis HOM05D007008 ORTHO05D008622 2.9e-46 188.3 103 83.5
TWI32G0141 Tripterygium wilfordii HOM05D007008 ORTHO05D008622 4.9e-46 187.6 103 84.5
Migut.A00362 Erythranthe guttata HOM05D007008 ORTHO05D008622 8.3e-46 186.8 103 84.5
Oeu048545.1 Olea europaea HOM05D007008 ORTHO05D008622 8.3e-46 186.8 102 85.3
Potri.006G265600 Populus trichocarpa HOM05D007008 ORTHO05D008622 8.3e-46 186.8 103 87.4
SGA_v2.0_scaffold4G02166 Striga asiatica HOM05D007008 ORTHO05D008622 1.4e-45 186.0 103 84.5
Phvul.001G040900 Phaseolus vulgaris HOM05D007008 ORTHO05D008622 1.9e-45 185.7 103 85.4
Glyma.17G224100 Glycine max HOM05D007008 ORTHO05D008622 4.1e-45 184.5 103 84.5
Glyma.14G101000 Glycine max HOM05D007008 ORTHO05D008622 5.4e-45 184.1 103 85.4
Potri.018G017300 Populus trichocarpa HOM05D007008 ORTHO05D008622 5.4e-45 184.1 103 84.5
SGA_v2.0_scaffold169G38605 Striga asiatica HOM05D007008 ORTHO05D008622 5.4e-45 184.1 102 83.3
THA.LOC104824959 Tarenaya hassleriana HOM05D007008 ORTHO05D008622 5.4e-45 184.1 100 85.0
Atru.chr7.2552 Acer truncatum HOM05D007008 ORTHO05D008622 7.0e-45 183.7 103 83.5
CDE05G1515 Ceratophyllum demersum HOM05D007008 ORTHO05D008622 7.0e-45 183.7 99 85.9
Oeu006861.2 Olea europaea HOM05D007008 ORTHO05D008622 1.2e-44 183.0 100 84.0
arahy.Tifrunner.gnm1.ann1.ENRJ0V Arachis hypogaea HOM05D007008 ORTHO05D008622 1.6e-44 182.6 102 84.3
arahy.Tifrunner.gnm1.ann1.K1H867 Arachis hypogaea HOM05D007008 ORTHO05D008622 1.6e-44 182.6 103 81.6
MSTRG.11785 Avicennia marina HOM05D007008 ORTHO05D008622 2.0e-44 182.2 103 82.5
AUR62024793 Chenopodium quinoa HOM05D007008 ORTHO05D008622 2.0e-44 182.2 101 85.1
Aqoxy7G03348 Aquilegia oxysepala HOM05D007008 ORTHO05D008622 2.7e-44 181.8 100 84.0
Gohir.A07G033600 Gossypium hirsutum HOM05D007008 ORTHO05D008622 4.6e-44 181.0 103 83.5
Gohir.D07G037200 Gossypium hirsutum HOM05D007008 ORTHO05D008622 4.6e-44 181.0 103 83.5
Gorai.001G038800 Gossypium raimondii HOM05D007008 ORTHO05D008622 4.6e-44 181.0 103 83.5
Lj5g0019856 Lotus japonicus HOM05D007008 ORTHO05D008622 4.6e-44 181.0 101 84.2
Sabra06G0208200 Salix brachista HOM05D007008 ORTHO05D008622 4.6e-44 181.0 102 84.3
Sed0013935 Sechium edule HOM05D007008 ORTHO05D008622 4.6e-44 181.0 102 81.4
TAR626G0196 Trochodendron aralioides HOM05D007008 ORTHO05D008622 6.0e-44 180.6 100 85.0
HanXRQChr03g0081451 Helianthus annuus HOM05D007008 ORTHO05D008622 7.8e-44 180.3 102 83.3
Sabra18G0020700 Salix brachista HOM05D007008 ORTHO05D008622 7.8e-44 180.3 107 82.2
Eucgr.L00629 Eucalyptus grandis HOM05D007008 ORTHO05D008622 1.7e-43 179.1 114 75.4
THA.LOC104799029 Tarenaya hassleriana HOM05D007008 ORTHO05D008622 1.7e-43 179.1 100 83.0
Lalb_Chr22g0361631 Lupinus albus HOM05D007008 ORTHO05D008622 3.0e-43 178.3 101 82.2
Sed0015687 Sechium edule HOM05D007008 ORTHO05D008622 8.6e-43 176.8 102 80.4
GSVIVG01035984001 Vitis vinifera HOM05D007008 ORTHO05D008622 8.6e-43 176.8 94 88.3
EL10Ac2g02486 Beta vulgaris HOM05D007008 ORTHO05D008622 1.5e-42 176.0 103 79.6
HanXRQChr17g0538991 Helianthus annuus HOM05D007008 ORTHO05D008622 1.9e-42 175.6 103 78.6
Glyma.06G060700 Glycine max HOM05D007008 ORTHO05D008622 2.5e-42 175.3 103 80.6
Hund02976 Selenicereus undatus HOM05D007008 ORTHO05D008622 3.3e-42 174.9 99 80.8
TAR383G0422 Trochodendron aralioides HOM05D007008 ORTHO05D008622 4.3e-42 174.5 101 79.2
Sopen08g002640 Solanum pennellii HOM05D007008 ORTHO05D008622 5.6e-42 174.1 92 89.1
AT5G10810 Arabidopsis thaliana HOM05D007008 ORTHO05D008622 2.1e-41 172.2 101 76.2
PSO170G4073 Papaver somniferum HOM05D007008 ORTHO05D008622 2.8e-41 171.8 99 81.8
PSO357G0206 Papaver somniferum HOM05D007008 ORTHO05D008622 2.8e-41 171.8 99 81.8
Glyma.04G060200 Glycine max HOM05D007008 ORTHO05D008622 3.6e-41 171.4 100 80.0
Carub.0006s0932 Capsella rubella HOM05D007008 ORTHO05D008622 4.7e-41 171.0 100 75.0
CARHR202480 Cardamine hirsuta HOM05D007008 ORTHO05D008622 4.7e-41 171.0 99 77.8
ECA240G3080 Erigeron canadensis HOM05D007008 ORTHO05D008622 4.7e-41 171.0 101 81.2
AL6G21390 Arabidopsis lyrata HOM05D007008 ORTHO05D008622 1.1e-40 169.9 101 74.3
Zm00001eb184500 Zea mays HOM05D007008 ORTHO05D008622 1.4e-40 169.5 101 75.2
Aa31LG3G16290 Aethionema arabicum HOM05D007008 ORTHO05D008622 1.8e-40 169.1 100 74.0
Thhalv10016011m.g Eutrema salsugineum HOM05D007008 ORTHO05D008622 1.8e-40 169.1 100 76.0
Cc11_g00350 Coffea canephora HOM05D007008 ORTHO05D008622 6.8e-40 167.2 94 83.0
A02p00680 Brassica napus HOM05D000653 ORTHO05D002177 8.9e-40 166.8 99 74.7
C02p04680 Brassica napus HOM05D000653 ORTHO05D002177 8.9e-40 166.8 99 74.7
BolC2t06426H Brassica oleracea HOM05D000238 ORTHO05D001043 8.9e-40 166.8 99 74.7
BraA02t05052Z Brassica rapa HOM05D000238 ORTHO05D001043 8.9e-40 166.8 99 74.7
Lsat_1_v5_gn_5_62001 Lactuca sativa HOM05D007008 ORTHO05D008622 1.5e-39 166.0 92 84.8
Medtr1g014230 Medicago truncatula HOM05D007008 ORTHO05D008622 1.5e-39 166.0 101 77.2
BcaB08g37301 Brassica carinata HOM05D000238 ORTHO05D008622 2.6e-39 165.2 98 74.5
PGR044G1005 Punica granatum HOM05D007008 ORTHO05D008622 3.4e-39 164.9 101 77.2
TPR.G38860 Trifolium pratense HOM05D007008 ORTHO05D008622 3.4e-39 164.9 101 74.3
BraA10t44733Z Brassica rapa HOM05D000238 ORTHO05D002998 4.4e-39 164.5 98 74.5
BcaC03g13334 Brassica carinata HOM05D000653 ORTHO05D002177 7.5e-39 163.7 99 73.7
Zm00001eb078360 Zea mays HOM05D007008 ORTHO05D008622 1.3e-38 162.9 101 70.3
BcaNung06639 Brassica carinata HOM05D000653 ORTHO05D008622 1.7e-38 162.5 99 71.7
BolC9t59417H Brassica oleracea HOM05D000238 ORTHO05D001043 1.7e-38 162.5 98 73.5
C09p65940 Brassica napus HOM05D007008 ORTHO05D008622 8.3e-38 160.2 98 71.4
Mapoly0112s0015 Marchantia polymorpha HOM05D007008 ORTHO05D008622 3.2e-37 158.3 101 70.3
SMO367G1120 Selaginella moellendorffii HOM05D007008 ORTHO05D008622 1.2e-33 146.4 100 64.0
AagrBONN_evm.TU.Sc2ySwM_344.3123 Anthoceros agrestis HOM05D007008 ORTHO05D008622 4.7e-33 144.4 101 66.3
CSS0004043 Camellia sinensis var. sinensis HOM05D007008 ORTHO05D008622 1.4e-32 142.9 74 93.2
Gorai.010G119400 Gossypium raimondii HOM05D007008 ORTHO05D008622 1.8e-32 142.5 74 90.5
CiPaw.07G231200 Carya illinoinensis HOM05D007008 ORTHO05D008622 4.0e-32 141.4 71 93.0
CBR_g34568 Chara braunii HOM05D007008 ORTHO05D008622 5.2e-32 141.0 92 67.4
arahy.Tifrunner.gnm1.ann1.T6XV8N Arachis hypogaea HOM05D007008 ORTHO05D008622 3.4e-31 138.3 82 78.0
MELO3C030305.2 Cucumis melo HOM05D007008 ORTHO05D008622 3.4e-31 138.3 74 87.8
Pp3c9_4080 Physcomitrium patens HOM05D007008 ORTHO05D008622 9.9e-31 136.7 101 59.4
Pp3c15_19100 Physcomitrium patens HOM05D007008 ORTHO05D008622 1.7e-30 136.0 101 58.4
COL.COLO4_18962 Corchorus olitorius HOM05D002170 ORTHO05D005003 4.9e-30 134.4 72 86.1
MCO13G493 Micromonas commoda HOM05D007008 ORTHO05D008622 4.9e-30 134.4 99 54.5
AUR62032427 Chenopodium quinoa HOM05D007008 ORTHO05D008622 1.1e-29 133.3 71 88.7
Ah.12g060690 Amaranthus hybridus HOM05D007008 ORTHO05D008622 5.4e-29 131.0 71 88.7
SMO197G0113 Selaginella moellendorffii HOM05D007008 ORTHO05D008622 5.4e-29 131.0 100 55.0
Hund25613 Selenicereus undatus HOM05D007008 ORTHO05D008622 2.7e-28 128.6 74 82.4
HPP92_017465 Vanilla planifolia HOM05D007008 ORTHO05D008622 2.7e-28 128.6 75 77.3
Psat6g026400 Pisum sativum HOM05D007008 ORTHO05D008622 1.7e-27 125.9 72 79.2
Sp6g32640 Schrenkiella parvula HOM05D000653 ORTHO05D002177 3.0e-27 125.2 71 80.3
PRCOL_00001314 Prasinoderma coloniale HOM05D007008 ORTHO05D008622 1.5e-26 122.9 99 53.5
SEGI_13302 Sequoiadendron giganteum HOM05D007008 ORTHO05D008622 9.5e-26 120.2 69 78.3
Os04g0499200 Oryza sativa ssp. japonica HOM05D007008 ORTHO05D008622 3.4e-23 111.7 76 61.8
Thecc.02G190100 Theobroma cacao HOM05D007008 ORTHO05D008622 2.4e-21 105.5 104 54.8
Thecc.02G024500 Theobroma cacao HOM05D007008 ORTHO05D008622 2.7e-20 102.1 64 76.6
Thecc.01G194900 Theobroma cacao HOM05D007008 ORTHO05D008622 5.1e-19 97.8 64 76.6
Os02g0611450 Oryza sativa ssp. japonica HOM05D007008 ORTHO05D008622 4.2e-13 78.2 54 63.0
Thecc.10G152400 Theobroma cacao HOM05D007008 ORTHO05D008622 2.1e-09 65.9 40 75.0
Thecc.05G179000 Theobroma cacao HOM05D000477 ORTHO05D000338 1.8e-08 62.8 42 69.0
MBI15_g08395_MAGBIO Magnolia biondii HOM05D007008 ORTHO05D008622 2.4e-08 62.4 34 85.3
CsaV3_2G032520 Cucumis sativus L. HOM05D000653 ORTHO05D002177 1.2e-07 60.1 34 79.4


User provided reference genes

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