Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_2g41180 Fragaria vesca HOM05D006008 ORTHO05D007334 8.0e-171 605.5 807 100.0
FAN27G1628 Fragaria x ananassa HOM05D006008 ORTHO05D007334 4.7e-163 579.7 807 97.5
FAN15G1576 Fragaria x ananassa HOM05D006008 ORTHO05D007334 6.0e-158 562.8 807 85.4
RcHm_v2.0_Chr6g0299351 Rosa chinensis HOM05D006008 ORTHO05D007334 1.5e-129 468.4 805 90.6
FAN20G2406 Fragaria x ananassa HOM05D006008 ORTHO05D007334 2.8e-115 421.0 239 93.7
MD08G1055800 Malus domestica HOM05D006008 ORTHO05D007334 2.7e-86 324.7 791 82.9
FAN20G1003 Fragaria x ananassa HOM05D006008 ORTHO05D007334 6.3e-83 313.5 157 97.5
Prupe.1G394600 Prunus persica HOM05D006008 ORTHO05D007334 5.3e-82 310.5 778 82.9
Manes.08G047700 Manihot esculenta HOM05D006008 ORTHO05D007334 2.3e-69 268.5 760 81.1
Cfa013044 Carpinus fangiana HOM05D006008 ORTHO05D007334 3.0e-69 268.1 779 80.4
Lj7P735T18 Lonicera japonica HOM05D006008 ORTHO05D007334 6.8e-69 266.9 751 81.2
Haze_21405 Corylus avellana HOM05D006008 ORTHO05D007334 1.2e-68 266.2 779 79.7
Dinv08184 Davidia involucrata HOM05D006008 ORTHO05D007334 1.5e-68 265.8 195 68.7
Atru.chr7.2558 Acer truncatum HOM05D006008 ORTHO05D007334 1.3e-67 262.7 758 80.2
Thecc.09G015100 Theobroma cacao HOM05D006008 ORTHO05D007334 1.3e-67 262.7 773 79.7
Duzib187G0883 Durio zibethinus HOM05D006008 ORTHO05D007334 1.1e-66 259.6 765 80.7
Actinidia23109 Actinidia chinensis HOM05D006008 ORTHO05D007334 2.7e-65 255.0 209 62.2
Cpa.g.sc148.18 Carica papaya HOM05D006008 ORTHO05D007334 2.7e-65 255.0 195 62.1
Sc09g0010690 Simmondsia chinensis HOM05D006008 ORTHO05D007334 4.5e-65 254.2 193 64.2
CSS0033722 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 5.9e-65 253.8 196 65.3
CANSAT54G1994 Cannabis sativa HOM05D006008 ORTHO05D007334 1.3e-64 252.7 772 55.8
Lj1g0008194 Lotus japonicus HOM05D006008 ORTHO05D007334 2.2e-64 251.9 763 79.7
vmacro05220 Vaccinium macrocarpon HOM05D006008 ORTHO05D007334 6.5e-64 250.4 210 61.0
Sabra06G0206900 Salix brachista HOM05D006008 ORTHO05D007334 8.5e-64 250.0 210 61.0
QL02p018792 Quercus lobata HOM05D006008 ORTHO05D007334 2.5e-63 248.4 739 82.3
arahy.Tifrunner.gnm1.ann1.E59C1E Arachis hypogaea HOM05D006008 ORTHO05D007334 4.2e-63 247.7 758 80.5
arahy.Tifrunner.gnm1.ann1.HZWF25 Arachis hypogaea HOM05D006008 ORTHO05D007334 4.2e-63 247.7 757 80.6
Rhsim07G0155900 Rhododendron simsii HOM05D006008 ORTHO05D007334 4.2e-63 247.7 198 64.1
Potri.006G264800 Populus trichocarpa HOM05D006008 ORTHO05D007334 9.4e-63 246.5 198 62.1
TWI63G1661 Tripterygium wilfordii HOM05D006008 ORTHO05D007334 9.4e-63 246.5 759 79.8
Gorai.009G063400 Gossypium raimondii HOM05D006008 ORTHO05D007334 2.7e-62 245.0 777 78.1
Gohir.D05G062300 Gossypium hirsutum HOM05D006008 ORTHO05D007334 6.1e-62 243.8 777 78.0
VMungo1309G2388 Vigna mungo HOM05D006008 ORTHO05D007334 8.0e-62 243.4 776 79.0
Sed0007713 Sechium edule HOM05D006008 ORTHO05D007334 1.4e-61 242.7 763 79.7
Nitab4.5_0000147g0080 Nicotiana tabacum HOM05D006008 ORTHO05D007334 2.3e-61 241.9 203 61.6
PSO384G1678 Papaver somniferum HOM05D006008 ORTHO05D007334 4.0e-61 241.1 197 62.9
CANSAT56G1562 Cannabis sativa HOM05D006008 ORTHO05D007334 2.6e-60 238.4 195 62.1
MELO3C032315.2 Cucumis melo HOM05D006008 ORTHO05D007334 3.4e-60 238.0 758 79.8
Hund20025 Selenicereus undatus HOM05D006008 ORTHO05D007334 4.4e-60 237.7 195 59.0
ClCG05G016190 Citrullus lanatus HOM05D006008 ORTHO05D007334 1.7e-59 235.7 758 79.3
Psat5g033520 Pisum sativum HOM05D006008 ORTHO05D007334 1.7e-59 235.7 743 80.3
CSS0025914 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 2.8e-59 235.0 172 69.2
Gohir.A05G060100 Gossypium hirsutum HOM05D006008 ORTHO05D007334 6.3e-59 233.8 776 77.2
TAR362G1189 Trochodendron aralioides HOM05D006008 ORTHO05D007334 6.3e-59 233.8 167 68.9
Glyma.06G061000 Glycine max HOM05D006008 ORTHO05D007334 1.1e-58 233.0 187 61.5
arahy.Tifrunner.gnm1.ann1.6M8E1A Arachis hypogaea HOM05D006008 ORTHO05D007334 7.0e-58 230.3 759 79.1
AUR62041936 Chenopodium quinoa HOM05D006008 ORTHO05D007334 7.0e-58 230.3 194 58.8
PGSC0003DMG400027232 Solanum tuberosum HOM05D006008 ORTHO05D007334 9.1e-58 229.9 177 63.8
CANSAT21G2303 Cannabis sativa HOM05D006008 ORTHO05D007334 2.0e-57 228.8 196 59.2
Solyc04g015440.4 Solanum lycopersicum HOM05D006008 ORTHO05D007334 2.0e-57 228.8 171 64.9
Sopen04g007490 Solanum pennellii HOM05D006008 ORTHO05D007334 2.0e-57 228.8 171 64.9
Migut.A00359 Erythranthe guttata HOM05D006008 ORTHO05D007334 2.7e-57 228.4 189 59.8
Phvul.009G086500 Phaseolus vulgaris HOM05D006008 ORTHO05D007334 2.7e-57 228.4 208 56.2
CSS0011965 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 3.5e-57 228.0 152 71.7
CSS0032373 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 3.5e-57 228.0 152 71.7
DCAR_022863 Daucus carota HOM05D006008 ORTHO05D007334 1.0e-56 226.5 169 64.5
TPR.G1871 Trifolium pratense HOM05D006008 ORTHO05D007334 1.0e-56 226.5 742 78.7
CANSAT21G0760 Cannabis sativa HOM05D006008 ORTHO05D007334 1.3e-56 226.1 189 58.7
Ca_15782_v3 Cicer arietinum L. HOM05D006008 ORTHO05D007334 1.3e-56 226.1 763 79.0
Peaxi162Scf01286g00125 Petunia axillaris HOM05D006008 ORTHO05D007334 1.5e-55 222.6 166 64.5
CANSAT80G2648 Cannabis sativa HOM05D006008 ORTHO05D007334 1.9e-55 222.2 191 58.6
Lsat_1_v5_gn_2_36140 Lactuca sativa HOM05D006008 ORTHO05D007334 3.3e-55 221.5 196 58.2
Lalb_Chr23g0268201 Lupinus albus HOM05D006008 ORTHO05D007334 4.2e-55 221.1 202 55.4
PGR142G1849 Punica granatum HOM05D006008 ORTHO05D007334 5.5e-55 220.7 210 55.2
Aqoxy7G02519 Aquilegia oxysepala HOM05D006008 ORTHO05D007334 7.2e-55 220.3 738 79.3
CANSAT80G0905 Cannabis sativa HOM05D006008 ORTHO05D007334 9.5e-55 219.9 195 57.9
ECA234G3283 Erigeron canadensis HOM05D006008 ORTHO05D007334 1.2e-54 219.5 185 59.5
CAN.G676.42 Capsicum annuum HOM05D006008 ORTHO05D007334 4.7e-54 217.6 171 62.6
THA.LOC104803618 Tarenaya hassleriana HOM05D006008 ORTHO05D007334 6.1e-54 217.2 185 57.8
Ah.04g163370 Amaranthus hybridus HOM05D002153 ORTHO05D002137 8.0e-54 216.9 185 59.5
SGA_v2.0_scaffold147G36344 Striga asiatica HOM05D006008 ORTHO05D007334 2.0e-52 212.2 185 55.7
CSS0018849 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 5.7e-52 210.7 193 60.6
Medtr3g105900 Medicago truncatula HOM05D006008 ORTHO05D007334 5.7e-52 210.7 199 55.3
ATR0580G290 Amborella trichopoda HOM05D006008 ORTHO05D007334 9.8e-52 209.9 172 60.5
CSS0030467 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 1.3e-51 209.5 191 57.6
CSS0046362 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 2.2e-51 208.8 196 57.7
CANSAT54G0183 Cannabis sativa HOM05D006008 ORTHO05D007334 2.8e-51 208.4 195 54.4
arahy.Tifrunner.gnm1.ann1.83E5X5 Arachis hypogaea HOM05D006008 ORTHO05D007334 3.7e-51 208.0 757 78.5
CSS0002096 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 1.4e-50 206.1 196 58.2
SalBow4G1429 Salvia bowleyana HOM05D006008 ORTHO05D007334 5.4e-50 204.1 166 61.4
BraA03t15143Z Brassica rapa HOM05D006008 ORTHO05D007334 1.6e-49 202.6 166 59.0
Lalb_Chr23g0268191 Lupinus albus HOM05D006008 ORTHO05D007334 1.8e-45 189.1 155 57.4
CiPaw.08G005700 Carya illinoinensis HOM05D006008 ORTHO05D007334 4.4e-44 184.5 120 74.2
Cc08_g07210 Coffea canephora HOM05D006008 ORTHO05D007334 4.4e-44 184.5 152 62.5
CsaV3_4G036480 Cucumis sativus L. HOM05D006008 ORTHO05D007334 2.2e-43 182.2 152 53.3
Glyma.04G060500 Glycine max HOM05D006008 ORTHO05D007334 1.9e-42 179.1 155 53.5
HanXRQChr09g0270581 Helianthus annuus HOM05D006008 ORTHO05D007334 1.9e-42 179.1 139 58.3
COL.COLO4_18956 Corchorus olitorius HOM05D006008 ORTHO05D007334 3.2e-42 178.3 154 54.5
Aa31LG2G18380 Aethionema arabicum HOM05D006008 ORTHO05D007334 1.6e-41 176.0 147 57.1
GSVIVG01035975001 Vitis vinifera HOM05D006008 ORTHO05D007334 1.6e-41 176.0 143 61.5
Nitab4.5_0001663g0180 Nicotiana tabacum HOM05D006008 ORTHO05D007334 6.0e-41 174.1 125 68.8
Carub.0007s0870 Capsella rubella HOM05D006008 ORTHO05D007334 1.7e-40 172.6 148 54.7
CSS0013958 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 6.6e-40 170.6 135 64.4
CDE02G3851 Ceratophyllum demersum HOM05D006008 ORTHO05D007334 1.5e-39 169.5 200 45.0
Eucgr.C01897 Eucalyptus grandis HOM05D006008 ORTHO05D007334 1.9e-39 169.1 155 54.2
A03p61020 Brassica napus HOM05D006008 ORTHO05D007334 2.5e-39 168.7 153 54.2
CSS0039067 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 2.5e-39 168.7 185 53.5
EL10Ac4g08536 Beta vulgaris HOM05D006008 ORTHO05D007334 2.1e-38 165.6 151 55.0
C07p58920 Brassica napus HOM05D006008 ORTHO05D007334 2.1e-38 165.6 139 56.1
BolC7t46339H Brassica oleracea HOM05D006008 ORTHO05D007334 2.1e-38 165.6 139 56.1
Oeu001622.3 Olea europaea HOM05D006008 ORTHO05D007334 2.8e-38 165.2 125 65.6
BcaNung01494 Brassica carinata HOM05D006008 ORTHO05D007334 1.4e-37 162.9 161 49.1
CARHR239780 Cardamine hirsuta HOM05D006008 ORTHO05D007334 3.1e-37 161.8 136 55.1
AL7G20130 Arabidopsis lyrata HOM05D006008 ORTHO05D007334 4.0e-37 161.4 139 54.7
MBI15_g18236_MAGBIO Magnolia biondii HOM05D006008 ORTHO05D007334 5.2e-37 161.0 166 51.2
Nn7g36097 Nelumbo nucifera HOM05D006008 ORTHO05D007334 2.0e-36 159.1 162 51.2
Thhalv10024264m.g Eutrema salsugineum HOM05D006008 ORTHO05D007334 7.5e-36 157.1 135 54.1
Sp7g29660 Schrenkiella parvula HOM05D006008 ORTHO05D007334 2.9e-35 155.2 139 55.4
Ciclev10007356m.g Citrus clementina HOM05D006008 ORTHO05D007334 6.4e-35 154.1 112 65.2
A01p06430 Brassica napus HOM05D006008 ORTHO05D007334 1.4e-34 152.9 182 46.2
BraA01t00604Z Brassica rapa HOM05D006008 ORTHO05D007334 1.4e-34 152.9 143 51.0
AT4G31850 Arabidopsis thaliana HOM05D006008 ORTHO05D007334 1.6e-33 149.4 133 55.6
Zm00001eb393290 Zea mays HOM05D006008 ORTHO05D007334 6.0e-33 147.5 142 49.3
C01p07070 Brassica napus HOM05D006008 ORTHO05D007334 1.3e-32 146.4 135 51.1
BcaC09g51977 Brassica carinata HOM05D006008 ORTHO05D007334 2.3e-32 145.6 136 50.0
ATR0180G020 Amborella trichopoda HOM05D006008 ORTHO05D007334 1.1e-31 143.3 129 54.3
Os10g0421800 Oryza sativa ssp. japonica HOM05D006008 ORTHO05D007334 5.6e-31 141.0 128 51.6
MSTRG.11782 Avicennia marina HOM05D006008 ORTHO05D007334 2.8e-30 138.7 150 42.7
Nn7g36096 Nelumbo nucifera HOM05D006008 ORTHO05D007334 2.8e-30 138.7 152 45.4
BcaNung03118 Brassica carinata HOM05D006008 ORTHO05D007334 4.7e-30 137.9 152 47.4
Nn7g37618 Nelumbo nucifera HOM05D006008 ORTHO05D007334 4.9e-27 127.9 130 50.0
CANSAT21G2219 Cannabis sativa HOM05D006008 ORTHO05D007334 4.1e-26 124.8 129 55.8
AUR62041257 Chenopodium quinoa HOM05D006008 ORTHO05D007334 9.2e-26 123.6 116 52.6
BolC1t00699H Brassica oleracea HOM05D006008 ORTHO05D007334 1.6e-25 122.9 160 43.8
SEGI_41266 Sequoiadendron giganteum HOM05D006008 ORTHO05D007334 6.0e-25 120.9 177 40.7
CSS0031354 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 1.7e-24 119.4 114 50.9
HPP92_017173 Vanilla planifolia HOM05D006008 ORTHO05D007334 2.0e-20 105.9 142 38.0
SEGI_02316 Sequoiadendron giganteum HOM05D006008 ORTHO05D007334 1.4e-18 99.8 124 41.9
BcaNung03117 Brassica carinata HOM05D006008 ORTHO05D007334 2.6e-12 79.0 79 48.1
HanXRQChr16g0518411 Helianthus annuus HOM05D002453 ORTHO05D002107 6.0e-09 67.8 163 28.8
Prupe.5G192300 Prunus persica HOM05D002453 ORTHO05D002107 1.0e-08 67.0 162 28.4
HPP92_026434 Vanilla planifolia HOM05D002453 ORTHO05D002107 1.3e-08 66.6 169 27.2
QL04p089735 Quercus lobata HOM05D022192 ORTHO05D009908 3.9e-08 65.1 43 72.1
PGR083G0367 Punica granatum HOM05D002453 ORTHO05D002107 5.1e-08 64.7 169 26.0
BcaC08g46987 Brassica carinata HOM05D002453 ORTHO05D002107 6.6e-08 64.3 160 26.2
CAN.G1456.8 Capsicum annuum HOM05D002453 ORTHO05D002107 6.6e-08 64.3 166 25.9
Lj5C111T12 Lonicera japonica HOM05D002453 ORTHO05D002107 8.7e-08 63.9 162 28.4
Hma1.2p1_0735F.1_g210570 Hydrangea macrophylla HOM05D002453 ORTHO05D002107 1.1e-07 63.5 169 26.6
Hma1.2p1_0735F.1_g210580 Hydrangea macrophylla HOM05D002453 ORTHO05D002107 1.1e-07 63.5 169 26.6
Lsat_1_v5_gn_1_13300 Lactuca sativa HOM05D002453 ORTHO05D002107 1.5e-07 63.2 169 27.2
Ah.11g048530 Amaranthus hybridus HOM05D002453 ORTHO05D002107 2.5e-07 62.4 164 24.4
TPR.G9250 Trifolium pratense HOM05D002453 ORTHO05D002107 2.5e-07 62.4 163 25.2
Atru.chr9.2259 Acer truncatum HOM05D002453 ORTHO05D002107 3.3e-07 62.0 168 25.0
FAN18G2707 Fragaria x ananassa HOM05D002453 ORTHO05D002107 4.3e-07 61.6 162 27.2
FAN08G1232 Fragaria x ananassa HOM05D002453 ORTHO05D002107 5.6e-07 61.2 162 26.5
CsaV3_1G005400 Cucumis sativus L. HOM05D002453 ORTHO05D002107 7.3e-07 60.8 150 25.3
VMungo0647G1609 Vigna mungo HOM05D002453 ORTHO05D002107 9.6e-07 60.5 163 25.8
FvH4_5g15040 Fragaria vesca HOM05D002453 ORTHO05D002107 1.3e-06 60.1 162 26.5
COL.COLO4_24521 Corchorus olitorius HOM05D002453 ORTHO05D002107 1.6e-06 59.7 163 25.2
Psat4g051440 Pisum sativum HOM05D002453 ORTHO05D002107 1.6e-06 59.7 163 25.2
MSTRG.23026 Avicennia marina HOM05D002453 ORTHO05D002107 3.6e-06 58.5 166 24.7
Phvul.008G197400 Phaseolus vulgaris HOM05D002453 ORTHO05D002107 3.6e-06 58.5 163 25.8
AUR62021699 Chenopodium quinoa HOM05D002453 ORTHO05D002107 4.8e-06 58.2 164 25.6
Glyma.17G099400 Glycine max HOM05D002453 ORTHO05D002107 4.8e-06 58.2 163 24.5
Nitab4.5_0005983g0010 Nicotiana tabacum HOM05D002453 ORTHO05D002107 4.8e-06 58.2 147 23.8
ClCG04G012320 Citrullus lanatus HOM05D002453 ORTHO05D002107 6.2e-06 57.8 166 24.1
Cc04_g16730 Coffea canephora HOM05D002453 ORTHO05D002107 6.2e-06 57.8 168 23.2
AUR62008396 Chenopodium quinoa HOM05D002453 ORTHO05D002107 8.1e-06 57.4 164 25.0


User provided reference genes

Program Settings