Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_2g41170 Fragaria vesca HOM05D004800 ORTHO05D005842 5.1e-114 414.5 213 100.0
FAN27G0477 Fragaria x ananassa HOM05D004800 ORTHO05D005842 2.0e-110 402.5 213 96.2
FAN20G2958 Fragaria x ananassa HOM05D004800 ORTHO05D005842 2.6e-110 402.1 213 96.2
RcHm_v2.0_Chr6g0299361 Rosa chinensis HOM05D004800 ORTHO05D005842 1.2e-94 350.1 215 83.3
Prupe.1G394400 Prunus persica HOM05D004800 ORTHO05D005842 4.3e-73 278.5 213 68.1
Cfa013047 Carpinus fangiana HOM05D004800 ORTHO05D005842 2.7e-67 259.2 209 66.0
CSS0020729 Camellia sinensis var. sinensis HOM05D004800 ORTHO05D005842 1.0e-66 257.3 213 63.4
CSS0041988 Camellia sinensis var. sinensis HOM05D004800 ORTHO05D005842 1.0e-66 257.3 213 63.4
Haze_21408 Corylus avellana HOM05D004800 ORTHO05D005842 1.0e-66 257.3 210 65.2
Manes.03G008100 Manihot esculenta HOM05D004800 ORTHO05D005842 6.7e-66 254.6 211 62.6
Ciclev10009140m.g Citrus clementina HOM05D004800 ORTHO05D005842 8.8e-66 254.2 213 61.5
Dinv13413 Davidia involucrata HOM05D004800 ORTHO05D005842 3.3e-65 252.3 200 65.0
Dinv08182 Davidia involucrata HOM05D004800 ORTHO05D005842 9.7e-65 250.8 208 62.5
vmacro05151 Vaccinium macrocarpon HOM05D004800 ORTHO05D005842 3.7e-64 248.8 189 65.6
Duzib168G1619 Durio zibethinus HOM05D004800 ORTHO05D005842 6.3e-64 248.1 207 62.8
Gorai.009G063300 Gossypium raimondii HOM05D004800 ORTHO05D005842 8.2e-64 247.7 213 61.0
CSS0021373 Camellia sinensis var. sinensis HOM05D004800 ORTHO05D005842 1.1e-63 247.3 188 68.1
Thecc.09G015200 Theobroma cacao HOM05D004800 ORTHO05D005842 1.1e-63 247.3 207 63.8
Rhsim07G0165700 Rhododendron simsii HOM05D004800 ORTHO05D005842 4.1e-63 245.4 206 60.7
TWI32G1317 Tripterygium wilfordii HOM05D004800 ORTHO05D005842 4.1e-63 245.4 200 65.0
Gohir.D05G062200 Gossypium hirsutum HOM05D004800 ORTHO05D005842 5.3e-63 245.0 213 60.1
Gohir.A05G060000 Gossypium hirsutum HOM05D004800 ORTHO05D005842 6.9e-63 244.6 213 60.6
Sed0002840 Sechium edule HOM05D004800 ORTHO05D005842 6.9e-63 244.6 209 62.2
COL.COLO4_18955 Corchorus olitorius HOM05D004800 ORTHO05D005842 9.1e-63 244.2 200 64.0
Manes.16G130200 Manihot esculenta HOM05D004800 ORTHO05D005842 9.1e-63 244.2 204 62.3
Lj7A735T34 Lonicera japonica HOM05D004800 ORTHO05D005842 2.6e-62 242.7 205 61.5
AUR62024801 Chenopodium quinoa HOM05D004800 ORTHO05D005842 5.9e-62 241.5 198 61.1
AUR62032420 Chenopodium quinoa HOM05D004800 ORTHO05D005842 7.7e-62 241.1 198 60.6
CiPaw.08G005800 Carya illinoinensis HOM05D004800 ORTHO05D005842 2.2e-61 239.6 208 61.1
DCAR_022862 Daucus carota HOM05D004800 ORTHO05D005842 2.9e-61 239.2 193 63.7
Hma1.2p1_0389F.1_g142470 Hydrangea macrophylla HOM05D004800 ORTHO05D005842 2.9e-61 239.2 211 60.7
Hund02986 Selenicereus undatus HOM05D004800 ORTHO05D005842 1.1e-60 237.3 201 60.7
TAR625G0162 Trochodendron aralioides HOM05D004800 ORTHO05D005842 1.9e-60 236.5 208 59.1
Cpa.g.sc148.17 Carica papaya HOM05D004800 ORTHO05D005842 3.2e-60 235.7 200 61.5
TWI34G0615 Tripterygium wilfordii HOM05D004800 ORTHO05D005842 3.2e-60 235.7 200 61.0
Potri.006G264700 Populus trichocarpa HOM05D004800 ORTHO05D005842 1.2e-59 233.8 214 57.5
TAR625G0311 Trochodendron aralioides HOM05D004800 ORTHO05D005842 1.2e-59 233.8 208 58.7
Ca_15781_v3 Cicer arietinum L. HOM05D004800 ORTHO05D005842 6.1e-59 231.5 202 61.4
TPR.G1887 Trifolium pratense HOM05D004800 ORTHO05D005842 1.0e-58 230.7 192 61.5
Lj1g0022737 Lotus japonicus HOM05D004800 ORTHO05D005842 1.4e-58 230.3 196 60.7
CANSAT25G3039 Cannabis sativa HOM05D004800 ORTHO05D005842 1.8e-58 229.9 199 61.8
EL10Ac2g02494 Beta vulgaris HOM05D004800 ORTHO05D005842 6.7e-58 228.0 197 59.9
Sc09g0010680 Simmondsia chinensis HOM05D004800 ORTHO05D005842 1.1e-57 227.3 201 57.7
MSTRG.25830 Avicennia marina HOM05D004800 ORTHO05D005842 1.5e-57 226.9 211 55.9
Psat5g033480 Pisum sativum HOM05D004800 ORTHO05D005842 3.3e-57 225.7 190 61.1
Actinidia14132 Actinidia chinensis HOM05D004800 ORTHO05D005842 4.4e-57 225.3 204 59.8
Sp2g22450 Schrenkiella parvula HOM05D004800 ORTHO05D005842 7.4e-57 224.6 209 56.0
THA.LOC104814986 Tarenaya hassleriana HOM05D004800 ORTHO05D005842 2.2e-56 223.0 200 57.5
Migut.A00358 Erythranthe guttata HOM05D004800 ORTHO05D005842 2.8e-56 222.6 206 55.8
Oeu001621.3 Olea europaea HOM05D004800 ORTHO05D005842 2.8e-56 222.6 211 53.6
Nitab4.5_0010613g0010 Nicotiana tabacum HOM05D004800 ORTHO05D005842 4.8e-56 221.9 224 54.9
Oeu009650.1 Olea europaea HOM05D004800 ORTHO05D005842 4.8e-56 221.9 211 54.5
Cc08_g07200 Coffea canephora HOM05D004800 ORTHO05D005842 6.3e-56 221.5 209 56.9
VMungo1309G1055 Vigna mungo HOM05D004800 ORTHO05D005842 6.3e-56 221.5 204 56.9
HanXRQChr13g0411011 Helianthus annuus HOM05D004800 ORTHO05D005842 8.2e-56 221.1 200 57.0
A06p35840 Brassica napus HOM05D004800 ORTHO05D005842 2.4e-55 219.5 213 54.5
BraA06t26509Z Brassica rapa HOM05D004800 ORTHO05D005842 2.4e-55 219.5 213 54.5
CsaV3_4G036490 Cucumis sativus L. HOM05D004800 ORTHO05D005842 4.1e-55 218.8 213 55.9
MD08G1055900 Malus domestica HOM05D004800 ORTHO05D005842 4.1e-55 218.8 207 56.5
SGA_v2.0_scaffold147G36341 Striga asiatica HOM05D004800 ORTHO05D005842 4.1e-55 218.8 209 54.1
SalBow4G3208 Salvia bowleyana HOM05D004800 ORTHO05D005842 5.3e-55 218.4 209 56.0
Medtr3g105925 Medicago truncatula HOM05D004800 ORTHO05D005842 7.0e-55 218.0 199 59.3
Phvul.009G086600 Phaseolus vulgaris HOM05D004800 ORTHO05D005842 1.6e-54 216.9 201 54.7
BcaNung03198 Brassica carinata HOM05D004800 ORTHO05D005842 2.0e-54 216.5 212 54.2
BcaNung02298 Brassica carinata HOM05D004800 ORTHO05D005842 2.6e-54 216.1 202 56.9
QL02p018802 Quercus lobata HOM05D004800 ORTHO05D005842 2.6e-54 216.1 209 55.0
MELO3C016954.2 Cucumis melo HOM05D004800 ORTHO05D005842 3.5e-54 215.7 213 54.5
Sabra06G0206800 Salix brachista HOM05D004800 ORTHO05D005842 3.5e-54 215.7 195 57.4
GSVIVG01035974001 Vitis vinifera HOM05D004800 ORTHO05D005842 7.7e-54 214.5 176 62.5
ClCG05G016220 Citrullus lanatus HOM05D004800 ORTHO05D005842 1.3e-53 213.8 207 55.6
Lsat_1_v5_gn_5_49760 Lactuca sativa HOM05D004800 ORTHO05D005842 1.1e-52 210.7 201 56.7
Peaxi162Scf00006g00249 Petunia axillaris HOM05D004800 ORTHO05D005842 1.1e-52 210.7 207 57.0
Lalb_Chr11g0063501 Lupinus albus HOM05D004800 ORTHO05D005842 1.9e-52 209.9 170 62.4
Sabra18G0021000 Salix brachista HOM05D004800 ORTHO05D005842 1.9e-52 209.9 203 54.7
Atru.chr7.2559 Acer truncatum HOM05D004800 ORTHO05D005842 9.4e-52 207.6 201 54.2
AT5G25080 Arabidopsis thaliana HOM05D004800 ORTHO05D005842 1.6e-51 206.8 202 52.0
BcaC04g23570 Brassica carinata HOM05D004800 ORTHO05D005842 1.6e-51 206.8 196 55.6
C09p07000 Brassica napus HOM05D004800 ORTHO05D005842 1.6e-51 206.8 196 55.6
Actinidia23108 Actinidia chinensis HOM05D004800 ORTHO05D005842 2.7e-51 206.1 214 54.7
Eucgr.C02606 Eucalyptus grandis HOM05D004800 ORTHO05D005842 2.7e-51 206.1 199 54.8
BraA09t36276Z Brassica rapa HOM05D004800 ORTHO05D005842 3.6e-51 205.7 205 53.7
C07p42740 Brassica napus HOM05D004800 ORTHO05D005842 4.7e-51 205.3 225 51.6
Eucgr.L02918 Eucalyptus grandis HOM05D004800 ORTHO05D005842 6.1e-51 204.9 208 53.4
CAN.G333.3 Capsicum annuum HOM05D004800 ORTHO05D005842 1.0e-50 204.1 197 54.8
unitig_749.g13819 Utricularia gibba HOM05D004800 ORTHO05D005842 1.0e-50 204.1 211 52.6
A09p06310 Brassica napus HOM05D004800 ORTHO05D005842 1.8e-50 203.4 205 53.2
BolC7t44804H Brassica oleracea HOM05D004800 ORTHO05D005842 2.3e-50 203.0 225 51.1
PGR044G1902 Punica granatum HOM05D004800 ORTHO05D005842 4.0e-50 202.2 202 53.5
Carub.0006s2291 Capsella rubella HOM05D004800 ORTHO05D005842 6.7e-50 201.4 202 52.5
BcaNung06718 Brassica carinata HOM05D004800 ORTHO05D005842 8.8e-50 201.1 186 56.5
AL6G36710 Arabidopsis lyrata HOM05D004800 ORTHO05D005842 1.1e-49 200.7 208 50.0
Thhalv10004902m.g Eutrema salsugineum HOM05D004800 ORTHO05D005842 2.6e-49 199.5 210 50.0
Glyma.06G061100 Glycine max HOM05D004800 ORTHO05D005842 3.3e-49 199.1 201 53.2
PSO339G1021 Papaver somniferum HOM05D004800 ORTHO05D005842 3.3e-49 199.1 206 51.0
PSO384G2235 Papaver somniferum HOM05D004800 ORTHO05D005842 3.3e-49 199.1 201 51.7
arahy.Tifrunner.gnm1.ann1.D8NHAG Arachis hypogaea HOM05D004800 ORTHO05D005842 7.5e-49 198.0 205 51.7
BolC9t53616H Brassica oleracea HOM05D004800 ORTHO05D005842 1.7e-48 196.8 195 53.8
CANSAT35G0701 Cannabis sativa HOM05D004800 ORTHO05D005842 1.7e-48 196.8 201 55.2
Aqoxy7G03382 Aquilegia oxysepala HOM05D004800 ORTHO05D005842 2.2e-48 196.4 207 54.1
PGSC0003DMG401028727 Solanum tuberosum HOM05D004800 ORTHO05D005842 4.8e-48 195.3 210 50.5
Solyc07g008750.4 Solanum lycopersicum HOM05D004800 ORTHO05D005842 6.3e-48 194.9 205 52.2
Sopen07g004690 Solanum pennellii HOM05D004800 ORTHO05D005842 2.4e-47 193.0 198 52.5
HPP92_017174 Vanilla planifolia HOM05D004800 ORTHO05D005842 2.4e-47 193.0 206 50.0
ATR0580G220 Amborella trichopoda HOM05D004800 ORTHO05D005842 4.5e-46 188.7 201 48.8
CARHR188420 Cardamine hirsuta HOM05D004800 ORTHO05D005842 5.9e-46 188.3 209 49.3
arahy.Tifrunner.gnm1.ann1.1BAV2G Arachis hypogaea HOM05D004800 ORTHO05D005842 7.2e-44 181.4 205 48.8
Aa31LG11G4300 Aethionema arabicum HOM05D004800 ORTHO05D005842 8.0e-43 177.9 190 47.4
CDE02G3876 Ceratophyllum demersum HOM05D004800 ORTHO05D005842 2.8e-40 169.5 199 49.2
Nn2g12411 Nelumbo nucifera HOM05D004800 ORTHO05D005842 1.8e-39 166.8 136 61.8
ECA240G1139 Erigeron canadensis HOM05D004800 ORTHO05D005842 1.2e-38 164.1 140 57.9
BcaB04g19808 Brassica carinata HOM05D004800 ORTHO05D005842 7.7e-38 161.4 203 49.8
Os08g0270200 Oryza sativa ssp. japonica HOM05D004800 ORTHO05D005842 1.1e-36 157.5 205 42.4
Zm00001eb177850 Zea mays HOM05D004800 ORTHO05D005842 1.6e-35 153.7 197 43.7
Peaxi162Scf01038g00137 Petunia axillaris HOM05D004800 ORTHO05D005842 1.8e-34 150.2 124 62.1
SHI21074 Sapria himalayana HOM05D004800 ORTHO05D005842 3.0e-34 149.4 217 43.3
Potri.018G018100 Populus trichocarpa HOM05D004800 ORTHO05D005842 5.7e-33 145.2 124 59.7
arahy.Tifrunner.gnm1.ann1.CUZL6Q Arachis hypogaea HOM05D004800 ORTHO05D005842 4.1e-31 139.0 205 41.0
arahy.Tifrunner.gnm1.ann1.N4WP0Z Arachis hypogaea HOM05D004800 ORTHO05D005842 4.1e-31 139.0 205 41.0
arahy.Tifrunner.gnm1.ann1.D9UBCD Arachis hypogaea HOM05D004800 ORTHO05D005842 1.2e-30 137.5 205 40.5
MBI14_g09103_MAGBIO Magnolia biondii HOM05D004800 ORTHO05D005842 2.7e-30 136.3 213 39.4
arahy.Tifrunner.gnm1.ann1.YE5PM3 Arachis hypogaea HOM05D004800 ORTHO05D005842 4.5e-30 135.6 205 40.0
unitig_26.g9784 Utricularia gibba HOM05D004800 ORTHO05D005842 1.8e-26 123.6 206 39.3
Lj5g0013304 Lotus japonicus HOM05D004800 ORTHO05D005842 3.0e-26 122.9 209 39.2
Phvul.001G041300 Phaseolus vulgaris HOM05D004800 ORTHO05D005842 4.0e-26 122.5 208 38.9
Nitab4.5_0000617g0080 Nicotiana tabacum HOM05D004800 ORTHO05D005842 1.2e-25 120.9 86 69.8
VMungo0647G1387 Vigna mungo HOM05D004800 ORTHO05D005842 1.1e-23 114.4 197 40.1
Glyma.14G101700 Glycine max HOM05D004800 ORTHO05D005842 1.4e-23 114.0 208 37.5
Mapoly0130s0032 Marchantia polymorpha HOM05D004800 ORTHO05D005842 1.9e-20 103.6 182 35.2
Pp3c2_14120 Physcomitrium patens HOM05D004800 ORTHO05D005842 3.6e-19 99.4 173 35.8
TPR.G38911 Trifolium pratense HOM05D004800 ORTHO05D005842 1.4e-18 97.4 208 35.1
AagrBONN_evm.TU.Sc2ySwM_368.3173 Anthoceros agrestis HOM05D004800 ORTHO05D005842 2.3e-18 96.7 181 35.9
Psat6g026000 Pisum sativum HOM05D004800 ORTHO05D005842 8.3e-16 88.2 184 33.7
SMO140G0030 Selaginella moellendorffii HOM05D004800 ORTHO05D005842 4.1e-15 85.9 185 33.5
Medtr1g014130 Medicago truncatula HOM05D004800 ORTHO05D005842 7.0e-15 85.1 175 33.7
SEGI_18119 Sequoiadendron giganteum HOM05D004800 ORTHO05D005842 1.1e-10 71.2 96 37.5
arahy.Tifrunner.gnm1.ann1.Y76JQK Arachis hypogaea HOM05D004800 ORTHO05D005842 2.0e-09 67.0 197 30.5
Sopen01g020190 Solanum pennellii HOM05D004800 ORTHO05D005842 2.0e-09 67.0 74 50.0
Lalb_Chr24g0401961 Lupinus albus HOM05D004800 ORTHO05D005842 4.4e-09 65.9 88 35.2
Sopen11g020420 Solanum pennellii HOM05D004800 ORTHO05D010331 4.4e-09 65.9 61 57.4
Sopen01g040360 Solanum pennellii HOM05D004800 ORTHO05D005842 7.5e-09 65.1 69 52.2
Sopen07g026310 Solanum pennellii HOM05D004800 ORTHO05D005842 7.5e-09 65.1 69 52.2
Zm00001eb353150 Zea mays HOM05D004800 ORTHO05D005842 7.5e-09 65.1 118 36.4
Sopen07g029020 Solanum pennellii HOM05D004800 ORTHO05D005842 1.7e-08 63.9 61 54.1
TPR.G28957 Trifolium pratense HOM05D000201 ORTHO05D000421 1.9e-07 60.5 48 56.2
CBR_g8579 Chara braunii HOM05D004800 ORTHO05D005842 4.1e-07 59.3 96 32.3
Sed0015580 Sechium edule HOM05D004800 ORTHO05D005842 1.2e-06 57.8 73 45.2


User provided reference genes

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