Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_2g40204 Fragaria vesca HOM05D004818 ORTHO05D005444 4.1e-41 171.0 89 100.0
FAN15G2220 Fragaria x ananassa HOM05D012912 ORTHO05D005444 9.8e-19 96.7 54 94.4
FvH4_2g40200 Fragaria vesca HOM05D004818 ORTHO05D005444 1.4e-17 92.8 53 92.5
FAN15G1739 Fragaria x ananassa HOM05D004818 ORTHO05D005444 6.8e-12 73.9 42 92.9
Glyma.12G036000 Glycine max HOM05D004818 ORTHO05D005444 8.9e-12 73.6 42 92.9
Gohir.A12G040700 Gossypium hirsutum HOM05D004818 ORTHO05D005444 8.9e-12 73.6 42 92.9
Lalb_Chr03g0025281 Lupinus albus HOM05D004818 ORTHO05D005444 8.9e-12 73.6 42 90.5
Prupe.8G082400 Prunus persica HOM05D004818 ORTHO05D005444 8.9e-12 73.6 42 92.9
Duzib132G0136 Durio zibethinus HOM05D004818 ORTHO05D005444 1.2e-11 73.2 42 90.5
Sed0012644 Sechium edule HOM05D004818 ORTHO05D005444 1.2e-11 73.2 42 90.5
COL.COLO4_10615 Corchorus olitorius HOM05D004818 ORTHO05D005444 1.5e-11 72.8 42 90.5
Thecc.02G073200 Theobroma cacao HOM05D004818 ORTHO05D005444 2.0e-11 72.4 42 90.5
CANSAT11G1677 Cannabis sativa HOM05D004818 ORTHO05D005444 2.6e-11 72.0 42 88.1
MD10G1061700 Malus domestica HOM05D004818 ORTHO05D005444 2.6e-11 72.0 42 90.5
Sed0015314 Sechium edule HOM05D004818 ORTHO05D005444 2.6e-11 72.0 42 88.1
TAR381G0131 Trochodendron aralioides HOM05D004818 ORTHO05D005444 2.6e-11 72.0 42 88.1
TAR625G1092 Trochodendron aralioides HOM05D004818 ORTHO05D005444 2.6e-11 72.0 42 88.1
CiPaw.05G074500 Carya illinoinensis HOM05D004818 ORTHO05D005444 3.4e-11 71.6 41 90.2
CiPaw.06G127200 Carya illinoinensis HOM05D004818 ORTHO05D005444 3.4e-11 71.6 41 90.2
MD00G1066700 Malus domestica HOM05D004818 ORTHO05D005444 3.4e-11 71.6 42 88.1
Medtr4g072130 Medicago truncatula HOM05D004818 ORTHO05D005444 3.4e-11 71.6 42 88.1
Potri.004G164066 Populus trichocarpa HOM05D004818 ORTHO05D005444 3.4e-11 71.6 42 88.1
Potri.009G125832 Populus trichocarpa HOM05D004818 ORTHO05D005444 3.4e-11 71.6 42 88.1
RcHm_v2.0_Chr6g0268521 Rosa chinensis HOM05D004818 ORTHO05D005444 3.4e-11 71.6 42 90.5
FvH4_2g40220 Fragaria vesca HOM05D012912 ORTHO05D017004 4.4e-11 71.2 40 95.0
Manes.18G015600 Manihot esculenta HOM05D004818 ORTHO05D005444 4.4e-11 71.2 42 88.1
CiPaw.09G132900 Carya illinoinensis HOM05D004818 ORTHO05D005444 5.7e-11 70.9 42 85.7
Duzib248G1544 Durio zibethinus HOM05D004818 ORTHO05D005444 5.7e-11 70.9 42 88.1
Eucgr.G01742 Eucalyptus grandis HOM05D004818 ORTHO05D005444 7.5e-11 70.5 42 85.7
Lalb_Chr19g0139031 Lupinus albus HOM05D004818 ORTHO05D005444 7.5e-11 70.5 42 90.5
TWI79G1427 Tripterygium wilfordii HOM05D004818 ORTHO05D005444 7.5e-11 70.5 42 85.7
VMungo1127G0843 Vigna mungo HOM05D004818 ORTHO05D005444 7.5e-11 70.5 42 88.1
Cfa005123 Carpinus fangiana HOM05D004818 ORTHO05D005444 9.8e-11 70.1 41 87.8
Ca_09579_v3 Cicer arietinum L. HOM05D004818 ORTHO05D005444 9.8e-11 70.1 42 85.7
ClCG05G018500 Citrullus lanatus HOM05D004818 ORTHO05D005444 9.8e-11 70.1 42 85.7
Gohir.A13G086700 Gossypium hirsutum HOM05D004818 ORTHO05D005444 9.8e-11 70.1 42 88.1
Gohir.D04G165300 Gossypium hirsutum HOM05D004818 ORTHO05D005444 9.8e-11 70.1 42 88.1
Sabra09G0096800 Salix brachista HOM05D004818 ORTHO05D005444 9.8e-11 70.1 42 85.7
HanXRQChr17g0551041 Helianthus annuus HOM05D004818 ORTHO05D005444 1.3e-10 69.7 41 87.8
Phvul.011G038100 Phaseolus vulgaris HOM05D004818 ORTHO05D005444 1.3e-10 69.7 41 90.2
Prupe.1G368600 Prunus persica HOM05D004818 ORTHO05D005444 1.3e-10 69.7 42 83.3
PGR142G0584 Punica granatum HOM05D004818 ORTHO05D005444 1.3e-10 69.7 42 85.7
Atru.chr5.3177 Acer truncatum HOM05D004818 ORTHO05D005444 1.7e-10 69.3 42 85.7
Gohir.D13G090600 Gossypium hirsutum HOM05D004818 ORTHO05D005444 1.7e-10 69.3 42 88.1
Gorai.001G244100 Gossypium raimondii HOM05D004818 ORTHO05D005444 1.7e-10 69.3 42 88.1
RcHm_v2.0_Chr6g0302511 Rosa chinensis HOM05D004818 ORTHO05D005444 1.7e-10 69.3 42 83.3
Gohir.A04G123300 Gossypium hirsutum HOM05D004818 ORTHO05D005444 2.2e-10 68.9 42 85.7
Lj3g0020574 Lotus japonicus HOM05D004818 ORTHO05D005444 2.2e-10 68.9 42 83.3
Ciclev10029771m.g Citrus clementina HOM05D004818 ORTHO05D005444 2.8e-10 68.6 58 69.0
Manes.04G082300 Manihot esculenta HOM05D004818 ORTHO05D005444 2.8e-10 68.6 42 83.3
TWI75G0908 Tripterygium wilfordii HOM05D004818 ORTHO05D005444 2.8e-10 68.6 42 83.3
Duzib052G0912 Durio zibethinus HOM05D004818 ORTHO05D005444 3.7e-10 68.2 42 85.7
Lsat_1_v5_gn_4_67521 Lactuca sativa HOM05D004818 ORTHO05D005444 3.7e-10 68.2 42 85.7
Rhsim05G0067400 Rhododendron simsii HOM05D004818 ORTHO05D005444 3.7e-10 68.2 50 74.0
TWI31G1300 Tripterygium wilfordii HOM05D004818 ORTHO05D005444 3.7e-10 68.2 42 83.3
MELO3C013404.2 Cucumis melo HOM05D004818 ORTHO05D005444 4.9e-10 67.8 42 85.7
CsaV3_3G045680 Cucumis sativus L. HOM05D004818 ORTHO05D005444 4.9e-10 67.8 38 92.1
CsaV3_7G000550 Cucumis sativus L. HOM05D004818 ORTHO05D005444 4.9e-10 67.8 42 85.7
Lalb_Chr01g0002101 Lupinus albus HOM05D004818 ORTHO05D005444 4.9e-10 67.8 42 83.3
Sed0018748 Sechium edule HOM05D004818 ORTHO05D005444 4.9e-10 67.8 42 85.7
TAR628G1422 Trochodendron aralioides HOM05D004818 ORTHO05D005444 4.9e-10 67.8 42 83.3
Ciclev10003088m.g Citrus clementina HOM05D004818 ORTHO05D005444 6.3e-10 67.4 42 81.0
Gohir.D12G031701 Gossypium hirsutum HOM05D004818 ORTHO05D005444 6.3e-10 67.4 42 85.7
arahy.Tifrunner.gnm1.ann1.LS9ND1 Arachis hypogaea HOM05D004818 ORTHO05D005444 8.3e-10 67.0 38 92.1
Cpa.g.sc150.3 Carica papaya HOM05D004818 ORTHO05D005444 8.3e-10 67.0 42 85.7
Lsat_1_v5_gn_8_127140 Lactuca sativa HOM05D004818 ORTHO05D005444 8.3e-10 67.0 41 82.9
MELO3C003769.2 Cucumis melo HOM05D004818 ORTHO05D005444 1.1e-09 66.6 39 87.2
PGR042G0239 Punica granatum HOM05D004818 ORTHO05D005444 1.1e-09 66.6 40 87.5
Sabra02G0020200 Salix brachista HOM05D004047 ORTHO05D004772 1.4e-09 66.2 41 82.9
Eucgr.I01336 Eucalyptus grandis HOM05D004818 ORTHO05D005444 1.8e-09 65.9 42 78.6
SalBow3G2817 Salvia bowleyana HOM05D004818 ORTHO05D005444 1.8e-09 65.9 42 78.6
Sed0003347 Sechium edule HOM05D004818 ORTHO05D005444 1.8e-09 65.9 42 83.3
Solyc01g110540.3 Solanum lycopersicum HOM05D004818 ORTHO05D005444 1.8e-09 65.9 42 83.3
PGSC0003DMG400001656 Solanum tuberosum HOM05D004818 ORTHO05D005444 1.8e-09 65.9 42 83.3
Nn5g29275 Nelumbo nucifera HOM05D004818 ORTHO05D005444 2.4e-09 65.5 39 84.6
AL3G11130 Arabidopsis lyrata HOM05D004818 ORTHO05D005444 3.1e-09 65.1 40 85.0
CSS0030409 Camellia sinensis var. sinensis HOM05D004818 ORTHO05D005444 3.1e-09 65.1 38 86.8
Nn6g32305 Nelumbo nucifera HOM05D004818 ORTHO05D005444 3.1e-09 65.1 39 84.6
Carub.0003s0104 Capsella rubella HOM05D004818 ORTHO05D005444 4.1e-09 64.7 40 82.5
Potri.002G024900 Populus trichocarpa HOM05D004818 ORTHO05D005444 4.1e-09 64.7 40 82.5
GSVIVG01009863001 Vitis vinifera HOM05D004818 ORTHO05D005444 5.4e-09 64.3 40 80.0
AT3G01130 Arabidopsis thaliana HOM05D004818 ORTHO05D005444 7.0e-09 63.9 38 86.8
Atru.chr13.327 Acer truncatum HOM05D004818 ORTHO05D005444 9.2e-09 63.5 35 91.4
BcaC01g04504 Brassica carinata HOM05D004818 ORTHO05D005444 9.2e-09 63.5 42 76.2
Oeu020676.1 Olea europaea HOM05D004818 ORTHO05D005444 9.2e-09 63.5 38 84.2
BcaC05g30384 Brassica carinata HOM05D004818 ORTHO05D005444 1.2e-08 63.2 40 80.0
A03p32690 Brassica napus HOM05D004818 ORTHO05D005444 1.2e-08 63.2 40 80.0
A05p44830 Brassica napus HOM05D004818 ORTHO05D005444 1.2e-08 63.2 40 80.0
C03p39790 Brassica napus HOM05D004818 ORTHO05D005444 1.2e-08 63.2 40 80.0
BolC3t16243H Brassica oleracea HOM05D004818 ORTHO05D005444 1.2e-08 63.2 40 80.0
BraA03t12437Z Brassica rapa HOM05D004818 ORTHO05D005444 1.2e-08 63.2 40 80.0
Sp3g00990 Schrenkiella parvula HOM05D004818 ORTHO05D005444 1.2e-08 63.2 40 80.0
PGSC0003DMG400004424 Solanum tuberosum HOM05D004818 ORTHO05D005444 1.2e-08 63.2 42 78.6
Aa31LG5G12500 Aethionema arabicum HOM05D004818 ORTHO05D005444 1.6e-08 62.8 40 82.5
Migut.B00126 Erythranthe guttata HOM05D004818 ORTHO05D005444 1.6e-08 62.8 42 76.2
CAN.G104.4 Capsicum annuum HOM05D004818 ORTHO05D005444 2.0e-08 62.4 42 81.0
Rhsim11G0184800 Rhododendron simsii HOM05D004818 ORTHO05D005444 2.0e-08 62.4 41 82.9
Migut.N01294 Erythranthe guttata HOM05D004818 ORTHO05D005444 2.7e-08 62.0 42 76.2
vmacro17409 Vaccinium macrocarpon HOM05D004818 ORTHO05D005444 2.7e-08 62.0 84 51.2
BcaC05g30492 Brassica carinata HOM05D004818 ORTHO05D005444 3.5e-08 61.6 40 77.5
BolC5t35118H Brassica oleracea HOM05D004818 ORTHO05D005444 3.5e-08 61.6 40 77.5
CSS0029185 Camellia sinensis var. sinensis HOM05D004818 ORTHO05D005444 3.5e-08 61.6 38 81.6
C09p75420 Brassica napus HOM05D004818 ORTHO05D005444 5.9e-08 60.8 40 77.5
BraA05t23174Z Brassica rapa HOM05D004818 ORTHO05D005444 7.8e-08 60.5 38 78.9
CAN.G1329.6 Capsicum annuum HOM05D004818 ORTHO05D005444 7.8e-08 60.5 42 78.6
ClCG02G004430 Citrullus lanatus HOM05D004818 ORTHO05D005444 7.8e-08 60.5 35 88.6
Potri.005G236500 Populus trichocarpa HOM05D004818 ORTHO05D005444 7.8e-08 60.5 41 78.0
Atru.chr10.813 Acer truncatum HOM05D004818 ORTHO05D005444 1.0e-07 60.1 42 76.2
Thhalv10021899m.g Eutrema salsugineum HOM05D004818 ORTHO05D005444 1.0e-07 60.1 40 77.5
PSO541G2816 Papaver somniferum HOM05D004818 ORTHO05D005444 1.0e-07 60.1 42 76.2
Glyma.09G222500 Glycine max HOM05D004818 ORTHO05D005444 1.3e-07 59.7 66 56.1
Manes.11G092164 Manihot esculenta HOM05D004818 ORTHO05D005444 1.3e-07 59.7 50 64.0
THA.LOC104821019 Tarenaya hassleriana HOM05D004818 ORTHO05D005444 1.3e-07 59.7 42 73.8
CARHR075920 Cardamine hirsuta HOM05D004818 ORTHO05D005444 2.3e-07 58.9 37 81.1
Sp6g28750 Schrenkiella parvula HOM05D004818 ORTHO05D005444 3.9e-07 58.2 42 73.8
Sc18g0005450 Simmondsia chinensis HOM05D004818 ORTHO05D005444 3.9e-07 58.2 41 73.2
Cc09_g06640 Coffea canephora HOM05D000190 ORTHO05D005444 5.0e-07 57.8 39 74.4
A03p07110 Brassica napus HOM05D004818 ORTHO05D005444 8.6e-07 57.0 42 73.8
C03p08100 Brassica napus HOM05D004818 ORTHO05D005444 8.6e-07 57.0 42 73.8
BolC3t13307H Brassica oleracea HOM05D004818 ORTHO05D005444 8.6e-07 57.0 42 73.8
BraA03t10033Z Brassica rapa HOM05D004818 ORTHO05D005444 8.6e-07 57.0 42 73.8
Thhalv10015231m.g Eutrema salsugineum HOM05D004818 ORTHO05D005444 8.6e-07 57.0 42 71.4
Nitab4.5_0002096g0010 Nicotiana tabacum HOM05D004818 ORTHO05D005444 8.6e-07 57.0 35 82.9
Aqoxy5G01447 Aquilegia oxysepala HOM05D004818 ORTHO05D005444 1.1e-06 56.6 39 82.1
Cc11_g00440 Coffea canephora HOM05D004860 ORTHO05D005444 1.1e-06 56.6 38 73.7
Aa31LG11G14220 Aethionema arabicum HOM05D004818 ORTHO05D005444 1.5e-06 56.2 40 75.0
AL6G26200 Arabidopsis lyrata HOM05D004818 ORTHO05D005444 1.5e-06 56.2 41 73.2
AT5G15320 Arabidopsis thaliana HOM05D004818 ORTHO05D005444 1.5e-06 56.2 41 73.2
Carub.0006s1351 Capsella rubella HOM05D004818 ORTHO05D005444 1.5e-06 56.2 41 73.2
CDE02G1235 Ceratophyllum demersum HOM05D004818 ORTHO05D005444 1.5e-06 56.2 38 78.9
Peaxi162Scf00362g01160 Petunia axillaris HOM05D004818 ORTHO05D005444 1.5e-06 56.2 38 76.3
SMO358G0321 Selaginella moellendorffii HOM05D004818 ORTHO05D005444 1.9e-06 55.8 40 72.5
BcaB08g36903 Brassica carinata HOM05D004818 ORTHO05D005444 2.5e-06 55.5 38 78.9
BcaC04g18956 Brassica carinata HOM05D004818 ORTHO05D005444 2.5e-06 55.5 38 78.9
C09p61780 Brassica napus HOM05D004818 ORTHO05D005444 2.5e-06 55.5 38 78.9
BolC9t59016H Brassica oleracea HOM05D004818 ORTHO05D005444 2.5e-06 55.5 38 78.9
FAN20G1549 Fragaria x ananassa HOM05D004818 ORTHO05D005444 2.5e-06 55.5 43 69.8
THA.LOC109116196 Tarenaya hassleriana HOM05D004818 ORTHO05D005444 3.3e-06 55.1 42 69.0
A10p23550 Brassica napus HOM05D004818 ORTHO05D005444 4.3e-06 54.7 38 76.3
BraA10t44421Z Brassica rapa HOM05D004818 ORTHO05D005444 4.3e-06 54.7 38 76.3
BcaB08g36904 Brassica carinata HOM05D004818 ORTHO05D005444 7.3e-06 53.9 38 76.3
CARHR197990 Cardamine hirsuta HOM05D004818 ORTHO05D005444 7.3e-06 53.9 40 70.0


User provided reference genes

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