Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_2g40020 Fragaria vesca HOM05D006576 ORTHO05D008644 0.0e+00 1354.0 651 100.0
FAN27G3021 Fragaria x ananassa HOM05D006576 ORTHO05D008644 0.0e+00 1325.8 651 98.2
RcHm_v2.0_Chr6g0300731 Rosa chinensis HOM05D006576 ORTHO05D008644 0.0e+00 1305.8 651 95.7
FAN20G0603 Fragaria x ananassa HOM05D006576 ORTHO05D008644 0.0e+00 1266.5 651 94.6
MD15G1029800 Malus domestica HOM05D006576 ORTHO05D008644 0.0e+00 1203.7 651 86.6
MD08G1033200 Malus domestica HOM05D006576 ORTHO05D008644 0.0e+00 1200.7 651 86.8
Prupe.1G381700 Prunus persica HOM05D006576 ORTHO05D008644 0.0e+00 1186.0 651 86.9
Gorai.002G129100 Gossypium raimondii HOM05D006576 ORTHO05D008644 0.0e+00 1159.8 650 82.9
Manes.11G048300 Manihot esculenta HOM05D006576 ORTHO05D008644 0.0e+00 1156.7 649 82.7
Gohir.A01G116700 Gossypium hirsutum HOM05D006576 ORTHO05D008644 0.0e+00 1154.8 650 82.6
Gohir.D01G105100 Gossypium hirsutum HOM05D006576 ORTHO05D008644 0.0e+00 1153.3 639 83.7
Ciclev10003149m.g Citrus clementina HOM05D006576 ORTHO05D008644 0.0e+00 1152.9 649 82.1
TAR381G1568 Trochodendron aralioides HOM05D006576 ORTHO05D008644 0.0e+00 1152.5 650 82.0
Thecc.08G024000 Theobroma cacao HOM05D006576 ORTHO05D008644 0.0e+00 1149.0 642 82.7
Glyma.06G033200 Glycine max HOM05D006576 ORTHO05D008644 0.0e+00 1148.3 651 81.1
Lalb_Chr11g0062371 Lupinus albus HOM05D006576 ORTHO05D008644 0.0e+00 1144.4 651 81.0
TWI36G0276 Tripterygium wilfordii HOM05D006576 ORTHO05D008644 0.0e+00 1143.6 650 82.0
QL02p007885 Quercus lobata HOM05D006576 ORTHO05D008644 0.0e+00 1139.8 696 78.6
VMungo1309G2241 Vigna mungo HOM05D006576 ORTHO05D008644 0.0e+00 1139.8 648 80.7
Lj1g0002309 Lotus japonicus HOM05D006576 ORTHO05D008644 0.0e+00 1139.0 651 80.5
Phvul.009G056900 Phaseolus vulgaris HOM05D006576 ORTHO05D008644 0.0e+00 1134.8 651 80.5
Medtr3g111730 Medicago truncatula HOM05D006576 ORTHO05D008644 0.0e+00 1134.0 650 80.3
arahy.Tifrunner.gnm1.ann1.N2LUF1 Arachis hypogaea HOM05D006576 ORTHO05D008644 0.0e+00 1133.2 651 79.7
FAN15G1632 Fragaria x ananassa HOM05D006576 ORTHO05D008644 0.0e+00 1132.5 643 88.5
arahy.Tifrunner.gnm1.ann1.G51JN1 Arachis hypogaea HOM05D006576 ORTHO05D008644 0.0e+00 1132.1 651 79.9
CsaV3_3G044990 Cucumis sativus L. HOM05D006576 ORTHO05D008644 0.0e+00 1131.3 651 80.0
Cpa.g.sc64.67 Carica papaya HOM05D006576 ORTHO05D008644 0.0e+00 1128.6 638 82.0
TWI12G0537 Tripterygium wilfordii HOM05D006576 ORTHO05D008644 0.0e+00 1127.9 650 80.6
MELO3C003867.2 Cucumis melo HOM05D006576 ORTHO05D008644 0.0e+00 1127.5 651 79.7
ClCG05G019150 Citrullus lanatus HOM05D006576 ORTHO05D008644 0.0e+00 1127.1 644 80.3
Sed0024937 Sechium edule HOM05D006576 ORTHO05D008644 0.0e+00 1114.4 651 78.8
Atru.BG.235.p Acer truncatum HOM05D006576 ORTHO05D008644 0.0e+00 1114.0 634 83.0
COL.COLO4_26345 Corchorus olitorius HOM05D006576 ORTHO05D008644 0.0e+00 1112.8 639 80.9
Atru.chr13.516 Acer truncatum HOM05D006576 ORTHO05D008644 0.0e+00 1110.1 648 80.6
CiPaw.16G055000 Carya illinoinensis HOM05D006576 ORTHO05D008644 0.0e+00 1109.4 647 80.2
Ca_15522_v3 Cicer arietinum L. HOM05D006576 ORTHO05D008644 0.0e+00 1109.0 641 79.7
Hma1.2p1_0203F.1_g086540 Hydrangea macrophylla HOM05D006576 ORTHO05D008644 0.0e+00 1108.6 647 77.9
PGR083G0445 Punica granatum HOM05D006576 ORTHO05D008644 0.0e+00 1108.6 650 78.8
Potri.014G180700 Populus trichocarpa HOM05D006576 ORTHO05D008644 0.0e+00 1108.2 654 79.2
Sabra14G0140900 Salix brachista HOM05D006576 ORTHO05D008644 0.0e+00 1105.5 650 78.9
MSTRG.25158 Avicennia marina HOM05D006576 ORTHO05D008644 0.0e+00 1103.6 650 76.9
HanXRQChr04g0105541 Helianthus annuus HOM05D006576 ORTHO05D008644 0.0e+00 1102.8 649 78.1
Migut.C00705 Erythranthe guttata HOM05D006576 ORTHO05D008644 0.0e+00 1102.4 650 76.6
Psat0s4808g0040 Pisum sativum HOM05D006576 ORTHO05D008644 0.0e+00 1102.4 669 76.5
Rhsim06G0035200 Rhododendron simsii HOM05D006576 ORTHO05D008644 0.0e+00 1099.7 682 75.4
Cc10_g03100 Coffea canephora HOM05D006576 ORTHO05D008644 0.0e+00 1097.8 651 76.3
Nn1g05071 Nelumbo nucifera HOM05D006576 ORTHO05D008644 0.0e+00 1097.4 647 78.2
Peaxi162Scf00690g00125 Petunia axillaris HOM05D006576 ORTHO05D008644 0.0e+00 1097.4 651 77.0
GSVIVG01009681001 Vitis vinifera HOM05D006576 ORTHO05D008644 0.0e+00 1097.0 640 80.2
CSS0022363 Camellia sinensis var. sinensis HOM05D006576 ORTHO05D008644 0.0e+00 1096.6 723 71.9
Hund26593 Selenicereus undatus HOM05D006576 ORTHO05D008644 0.0e+00 1083.9 648 76.7
Solyc04g080140.4 Solanum lycopersicum HOM05D006576 ORTHO05D008644 0.0e+00 1082.0 651 75.9
Lj4A42T76 Lonicera japonica HOM05D006576 ORTHO05D008644 0.0e+00 1081.2 663 75.9
Haze_17991 Corylus avellana HOM05D006576 ORTHO05D008644 0.0e+00 1079.3 805 66.3
Lsat_1_v5_gn_1_17900 Lactuca sativa HOM05D006576 ORTHO05D008644 0.0e+00 1078.9 643 77.4
Nitab4.5_0012039g0010 Nicotiana tabacum HOM05D006576 ORTHO05D008644 0.0e+00 1076.6 651 75.6
EL10Ac1g01831 Beta vulgaris HOM05D006576 ORTHO05D008644 0.0e+00 1076.2 646 76.2
Eucgr.F01554 Eucalyptus grandis HOM05D006576 ORTHO05D008644 0.0e+00 1076.2 656 77.0
Sopen04g033720 Solanum pennellii HOM05D006576 ORTHO05D008644 4.5e-312 1074.7 640 76.6
THA.LOC104822840 Tarenaya hassleriana HOM05D006576 ORTHO05D008644 8.9e-312 1073.2 648 76.7
SalBow7G4023 Salvia bowleyana HOM05D006576 ORTHO05D008644 1.3e-311 1072.4 668 73.2
DCAR_019521 Daucus carota HOM05D006576 ORTHO05D008644 4.0e-311 1070.8 652 75.8
Nitab4.5_0000110g0470 Nicotiana tabacum HOM05D006576 ORTHO05D008644 1.7e-309 1065.4 651 75.3
Actinidia15312 Actinidia chinensis HOM05D006576 ORTHO05D008644 2.2e-309 1065.1 613 79.8
CAN.G1126.39 Capsicum annuum HOM05D006576 ORTHO05D008644 1.1e-308 1062.8 638 75.7
AUR62033848 Chenopodium quinoa HOM05D006576 ORTHO05D008644 1.3e-306 1055.8 650 74.6
Ah.05g167470 Amaranthus hybridus HOM05D006576 ORTHO05D008644 1.5e-305 1052.4 650 74.5
CSS0029857 Camellia sinensis var. sinensis HOM05D006576 ORTHO05D008644 1.9e-305 1052.0 597 81.2
SGA_v2.0_scaffold24G10239 Striga asiatica HOM05D006576 ORTHO05D008644 1.9e-305 1052.0 647 74.3
Glyma.04G033200 Glycine max HOM05D006576 ORTHO05D008644 1.6e-304 1048.9 594 80.3
Aqoxy6G01046 Aquilegia oxysepala HOM05D006576 ORTHO05D008644 2.8e-304 1048.1 650 74.3
ECA247G3618 Erigeron canadensis HOM05D006576 ORTHO05D008644 2.8e-304 1048.1 613 78.5
vmacro21626 Vaccinium macrocarpon HOM05D006576 ORTHO05D008644 2.0e-302 1042.0 794 63.7
Sp1g33910 Schrenkiella parvula HOM05D006576 ORTHO05D008644 7.5e-302 1040.0 648 74.4
BcaB04g17577 Brassica carinata HOM05D006576 ORTHO05D008644 1.7e-301 1038.9 642 73.7
A08p06220 Brassica napus HOM05D006576 ORTHO05D008644 4.9e-301 1037.3 649 73.3
Thhalv10011304m.g Eutrema salsugineum HOM05D006576 ORTHO05D008644 8.3e-301 1036.6 649 73.0
Carub.0001s3555 Capsella rubella HOM05D006576 ORTHO05D008644 2.4e-300 1035.0 636 74.2
BraA08t32625Z Brassica rapa HOM05D006576 ORTHO05D008644 7.0e-300 1033.5 649 72.9
PSO675G1390 Papaver somniferum HOM05D006576 ORTHO05D008644 1.5e-297 1025.8 646 73.4
CANSAT25G2025 Cannabis sativa HOM05D006576 ORTHO05D008644 1.9e-297 1025.4 576 83.3
AT1G45150 Arabidopsis thaliana HOM05D006576 ORTHO05D008644 2.5e-297 1025.0 647 72.6
BcaC07g37274 Brassica carinata HOM05D006576 ORTHO05D008644 7.3e-297 1023.5 649 72.6
C08p07030 Brassica napus HOM05D006576 ORTHO05D008644 7.3e-297 1023.5 649 72.6
BolC8t47545H Brassica oleracea HOM05D006576 ORTHO05D008644 7.3e-297 1023.5 649 72.6
ATR0733G192 Amborella trichopoda HOM05D006576 ORTHO05D008644 1.0e-290 1003.0 646 71.8
Os07g0581300 Oryza sativa ssp. japonica HOM05D006576 ORTHO05D008644 5.1e-290 1000.7 644 70.7
PSO541G0394 Papaver somniferum HOM05D006576 ORTHO05D008644 2.3e-287 991.9 646 72.0
Duzib093G2111 Durio zibethinus HOM05D006576 ORTHO05D008644 5.8e-286 987.3 650 72.8
Zm00001eb107720 Zea mays HOM05D006576 ORTHO05D008644 3.6e-272 941.4 594 72.4
AL1G52790 Arabidopsis lyrata HOM05D006576 ORTHO05D008644 7.1e-268 927.2 558 74.9
Sc02g0006340 Simmondsia chinensis HOM05D006576 ORTHO05D008644 9.3e-260 900.2 556 75.4
Mapoly0015s0075 Marchantia polymorpha HOM05D006576 ORTHO05D008644 1.5e-254 882.9 639 62.9
CDE04G1970 Ceratophyllum demersum HOM05D006576 ORTHO05D008644 3.5e-251 871.7 575 69.7
Pp3c21_15170 Physcomitrium patens HOM05D006576 ORTHO05D008644 2.5e-249 865.5 638 63.3
SMO367G0262 Selaginella moellendorffii HOM05D006576 ORTHO05D008644 2.6e-238 828.9 644 60.4
Hma1.2p1_0203F.1_g086550 Hydrangea macrophylla HOM05D006576 ORTHO05D008644 3.8e-205 718.8 513 66.7
CARHR036240 Cardamine hirsuta HOM05D006576 ORTHO05D008644 7.0e-191 671.4 363 79.6
Dinv36060 Davidia involucrata HOM05D006576 ORTHO05D008644 3.1e-178 629.4 374 79.4
Oeu005363.1 Olea europaea HOM05D006576 ORTHO05D008644 1.2e-163 580.9 378 71.7
unitig_578.g16727 Utricularia gibba HOM05D006576 ORTHO05D008644 1.9e-159 567.0 557 52.6
AUR62041679 Chenopodium quinoa HOM05D006576 ORTHO05D008644 7.1e-159 565.1 373 71.0
CBR_g55233 Chara braunii HOM05D006576 ORTHO05D008644 1.6e-142 510.8 532 50.2
AUR62041680 Chenopodium quinoa HOM05D006576 ORTHO05D008644 3.1e-122 443.4 241 80.1
CBR_g6514 Chara braunii HOM05D006576 ORTHO05D008644 8.3e-83 312.4 740 31.6
SEGI_38008 Sequoiadendron giganteum HOM05D006576 ORTHO05D008644 2.5e-79 300.8 152 86.8
SHI46795 Sapria himalayana HOM05D006576 ORTHO05D008644 1.4e-66 258.5 244 57.4
Lsat_1_v5_gn_3_960 Lactuca sativa HOM05D006576 ORTHO05D008644 2.4e-58 231.1 200 59.0
Nn7g38200 Nelumbo nucifera HOM05D006576 ORTHO05D008644 4.5e-28 130.6 72 84.7
Nn2g14734 Nelumbo nucifera HOM05D006576 ORTHO05D008644 7.6e-28 129.8 73 82.2
Zm00001eb352490 Zea mays HOM05D006576 ORTHO05D008499 1.2e-25 122.5 95 64.2
Atru.chr11.1906 Acer truncatum HOM05D006576 ORTHO05D008644 1.3e-24 119.0 77 68.8
MBI18_g09633_MAGBIO Magnolia biondii HOM05D006576 ORTHO05D008644 1.9e-23 115.2 71 67.6
MBI18_g06878_MAGBIO Magnolia biondii HOM05D006576 ORTHO05D008644 9.6e-23 112.8 70 68.6
MBI13_g29621_MAGBIO Magnolia biondii HOM05D006576 ORTHO05D008644 1.5e-20 105.5 70 64.3
MD05G1053300 Malus domestica HOM05D006576 ORTHO05D248938 2.6e-20 104.8 64 73.4
Zm00001eb326440 Zea mays HOM05D006576 ORTHO05D028753 6.5e-19 100.1 66 72.7
Zm00001eb361570 Zea mays HOM05D006576 ORTHO05D028753 6.5e-19 100.1 66 72.7
Zm00001eb377960 Zea mays HOM05D006576 ORTHO05D028753 6.5e-19 100.1 66 72.7
CBR_g55378 Chara braunii HOM05D006576 ORTHO05D028753 4.2e-18 97.4 83 57.8
Zm00001eb171910 Zea mays HOM05D000538 ORTHO05D003297 7.1e-18 96.7 118 47.5
MBI18_g23781_MAGBIO Magnolia biondii HOM05D006576 ORTHO05D008644 1.3e-11 75.9 52 61.5
Zm00001eb147180 Zea mays HOM05D014217 ORTHO05D000496 3.8e-11 74.3 67 56.7
Zm00001eb413530 Zea mays HOM05D014217 ORTHO05D000496 3.2e-10 71.2 64 56.2
AL4G26800 Arabidopsis lyrata HOM05D006576 ORTHO05D008644 7.2e-10 70.1 99 42.4


User provided reference genes

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