Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_2g39960 Fragaria vesca HOM05D005308 ORTHO05D006494 0.0e+00 1169.1 621 100.0
FAN27G1201 Fragaria x ananassa HOM05D005308 ORTHO05D006494 0.0e+00 1135.6 623 97.3
FAN15G3722 Fragaria x ananassa HOM05D005308 ORTHO05D006494 0.0e+00 1132.5 623 97.1
RcHm_v2.0_Chr6g0300791 Rosa chinensis HOM05D005308 ORTHO05D006494 9.4e-302 1039.6 626 85.8
Prupe.1G381500 Prunus persica HOM05D005308 ORTHO05D006494 1.0e-279 966.5 592 82.9
MD15G1030000 Malus domestica HOM05D005308 ORTHO05D006494 5.4e-265 917.5 594 79.8
MD08G1033400 Malus domestica HOM05D005308 ORTHO05D006494 8.0e-261 903.7 592 78.5
GSVIVG01009686001 Vitis vinifera HOM05D005308 ORTHO05D006494 9.5e-238 827.0 585 72.1
QL02p007937 Quercus lobata HOM05D005308 ORTHO05D006494 8.9e-236 820.5 599 70.6
CiPaw.15G075700 Carya illinoinensis HOM05D005308 ORTHO05D006494 2.2e-234 815.8 601 70.0
Cfa018137 Carpinus fangiana HOM05D005308 ORTHO05D006494 8.4e-234 813.9 601 70.7
Atru.chr13.513 Acer truncatum HOM05D005308 ORTHO05D006494 1.3e-231 806.6 595 69.6
Atru.chr8.2603 Acer truncatum HOM05D005308 ORTHO05D006494 1.7e-231 806.2 594 69.2
Haze_17987 Corylus avellana HOM05D005308 ORTHO05D006494 3.0e-231 805.4 601 70.4
Glyma.14G076200 Glycine max HOM05D005308 ORTHO05D006494 5.1e-231 804.7 597 69.3
Hma1.2p1_0077F.1_g039700 Hydrangea macrophylla HOM05D005308 ORTHO05D006494 6.6e-231 804.3 604 68.9
Dinv39406 Davidia involucrata HOM05D005308 ORTHO05D006494 2.8e-229 798.9 600 70.3
Ciclev10000534m.g Citrus clementina HOM05D005308 ORTHO05D006494 1.4e-228 796.6 611 67.8
Manes.05G161700 Manihot esculenta HOM05D005308 ORTHO05D006494 2.4e-228 795.8 600 68.2
Lj5g0021582 Lotus japonicus HOM05D005308 ORTHO05D006494 7.6e-227 790.8 596 68.0
Medtr1g022045 Medicago truncatula HOM05D005308 ORTHO05D006494 1.3e-226 790.0 601 67.9
PGR031G2270 Punica granatum HOM05D005308 ORTHO05D006494 1.4e-225 786.6 611 67.3
Sabra02G0199700 Salix brachista HOM05D005308 ORTHO05D006494 6.0e-224 781.2 578 69.2
Duzib093G0415 Durio zibethinus HOM05D005308 ORTHO05D006494 2.3e-223 779.2 602 67.1
Glyma.17G249600 Glycine max HOM05D005308 ORTHO05D006494 2.3e-223 779.2 604 67.2
ClCG08G015210 Citrullus lanatus HOM05D005308 ORTHO05D006494 3.0e-223 778.9 598 67.2
ClCG08G015240 Citrullus lanatus HOM05D005308 ORTHO05D006494 3.0e-223 778.9 598 67.2
Potri.014G180900 Populus trichocarpa HOM05D005308 ORTHO05D006494 1.3e-221 773.5 605 67.3
Potri.002G262900 Populus trichocarpa HOM05D005308 ORTHO05D006494 2.1e-221 772.7 578 68.7
Ca_13346_v3 Cicer arietinum L. HOM05D005308 ORTHO05D006494 1.1e-220 770.4 601 66.6
MELO3C010930.2 Cucumis melo HOM05D005308 ORTHO05D006494 1.1e-220 770.4 606 65.5
Duzib041G0136 Durio zibethinus HOM05D005308 ORTHO05D006494 1.8e-220 769.6 598 66.9
Thecc.08G024400 Theobroma cacao HOM05D005308 ORTHO05D006494 4.0e-220 768.5 597 66.8
Sed0011840 Sechium edule HOM05D005308 ORTHO05D006494 5.3e-220 768.1 639 63.5
Phvul.001G015400 Phaseolus vulgaris HOM05D005308 ORTHO05D006494 1.2e-219 766.9 598 66.7
Psat6g007480 Pisum sativum HOM05D005308 ORTHO05D006494 2.6e-219 765.8 603 66.5
Duzib116G0819 Durio zibethinus HOM05D005308 ORTHO05D006494 3.4e-219 765.4 596 66.9
Gorai.009G203600 Gossypium raimondii HOM05D005308 ORTHO05D006494 9.9e-219 763.8 653 62.3
Eucgr.F01908 Eucalyptus grandis HOM05D005308 ORTHO05D006494 2.2e-218 762.7 600 67.0
VMungo0647G0443 Vigna mungo HOM05D005308 ORTHO05D006494 2.9e-218 762.3 601 66.2
CsaV3_2G028560 Cucumis sativus L. HOM05D005308 ORTHO05D006494 1.1e-217 760.4 607 64.4
Lalb_Chr22g0355491 Lupinus albus HOM05D005308 ORTHO05D006494 1.1e-217 760.4 525 72.2
Gohir.A05G195300 Gossypium hirsutum HOM05D005308 ORTHO05D006494 4.2e-217 758.4 668 61.1
Gorai.010G011100 Gossypium raimondii HOM05D005308 ORTHO05D006494 5.4e-217 758.1 586 66.4
Gohir.A06G010900 Gossypium hirsutum HOM05D005308 ORTHO05D006494 2.7e-216 755.7 586 66.0
COL.COLO4_26340 Corchorus olitorius HOM05D005308 ORTHO05D006494 3.5e-216 755.4 527 73.8
Gohir.D06G008300 Gossypium hirsutum HOM05D005308 ORTHO05D006494 3.5e-216 755.4 586 66.4
Gohir.D05G198500 Gossypium hirsutum HOM05D005308 ORTHO05D006494 3.9e-215 751.9 653 61.6
TPR.G29756 Trifolium pratense HOM05D005308 ORTHO05D006494 7.4e-214 747.7 607 64.7
Sed0021548 Sechium edule HOM05D005308 ORTHO05D006494 2.8e-213 745.7 639 62.0
vmacro04517 Vaccinium macrocarpon HOM05D005308 ORTHO05D006494 9.9e-211 737.3 607 63.9
Nitab4.5_0003783g0070 Nicotiana tabacum HOM05D005308 ORTHO05D006494 1.4e-209 733.4 602 63.6
CsaV3_2G028600 Cucumis sativus L. HOM05D005308 ORTHO05D006494 4.2e-209 731.9 581 64.5
Nitab4.5_0000110g0380 Nicotiana tabacum HOM05D005308 ORTHO05D006494 1.6e-208 729.9 602 63.5
Lj4P784T41 Lonicera japonica HOM05D005308 ORTHO05D006494 4.6e-208 728.4 586 65.0
Cc03_g06460 Coffea canephora HOM05D005308 ORTHO05D006494 5.1e-207 724.9 598 63.2
Rhsim07G0237100 Rhododendron simsii HOM05D005308 ORTHO05D006494 1.1e-206 723.8 601 63.7
TWI73G1022 Tripterygium wilfordii HOM05D005308 ORTHO05D006494 1.3e-205 720.3 600 65.2
PGSC0003DMG400005144 Solanum tuberosum HOM05D005308 ORTHO05D006494 1.6e-205 719.9 587 63.5
Solyc04g080180.1 Solanum lycopersicum HOM05D005308 ORTHO05D006494 4.8e-205 718.4 587 63.9
Sopen04g033770 Solanum pennellii HOM05D005308 ORTHO05D006494 5.3e-204 714.9 587 63.9
AUR62032897 Chenopodium quinoa HOM05D005308 ORTHO05D006494 2.5e-201 706.1 591 62.4
EL10Ac9g23018 Beta vulgaris HOM05D005308 ORTHO05D006494 4.2e-201 705.3 598 62.0
Ah.01g011450 Amaranthus hybridus HOM05D005308 ORTHO05D006494 2.3e-199 699.5 593 61.4
CAN.G1126.42 Capsicum annuum HOM05D005308 ORTHO05D006494 3.0e-199 699.1 599 61.9
THA.LOC104813841 Tarenaya hassleriana HOM05D005308 ORTHO05D006494 3.0e-199 699.1 611 61.0
Sc02g0006300 Simmondsia chinensis HOM05D005308 ORTHO05D006494 3.9e-199 698.7 600 62.3
Sp5g30270 Schrenkiella parvula HOM05D005308 ORTHO05D006494 9.7e-198 694.1 590 62.9
Aqoxy3G02057 Aquilegia oxysepala HOM05D005308 ORTHO05D006494 1.8e-196 689.9 612 59.2
Thhalv10018268m.g Eutrema salsugineum HOM05D005308 ORTHO05D006494 3.2e-193 679.1 598 60.7
Carub.0002s2195 Capsella rubella HOM05D005308 ORTHO05D006494 1.8e-191 673.3 591 60.6
Peaxi162Scf00690g00113 Petunia axillaris HOM05D005308 ORTHO05D006494 3.3e-190 669.1 614 59.3
Oeu052497.1 Olea europaea HOM05D005308 ORTHO05D006494 2.8e-189 666.0 523 64.2
SalBow5G1122 Salvia bowleyana HOM05D005308 ORTHO05D006494 3.7e-189 665.6 520 63.8
CARHR068470 Cardamine hirsuta HOM05D005308 ORTHO05D006494 4.8e-189 665.2 588 59.5
TAR376G0813 Trochodendron aralioides HOM05D005308 ORTHO05D006494 4.8e-189 665.2 535 65.0
THA.LOC104806374 Tarenaya hassleriana HOM05D005308 ORTHO05D006494 8.2e-189 664.5 600 59.3
AT1G75140 Arabidopsis thaliana HOM05D005308 ORTHO05D006494 1.8e-188 663.3 590 60.7
MSTRG.11457 Avicennia marina HOM05D005308 ORTHO05D006494 4.1e-188 662.1 597 58.3
Oeu016389.1 Olea europaea HOM05D005308 ORTHO05D006494 2.6e-187 659.4 528 63.4
CSS0027115 Camellia sinensis var. sinensis HOM05D005308 ORTHO05D006494 3.4e-187 659.1 573 62.0
AL2G35040 Arabidopsis lyrata HOM05D005308 ORTHO05D006494 1.3e-186 657.1 590 60.0
MSTRG.23132 Avicennia marina HOM05D005308 ORTHO05D006494 3.8e-186 655.6 598 58.9
AUR62017754 Chenopodium quinoa HOM05D005308 ORTHO05D006494 3.8e-186 655.6 504 66.7
Aa31LG7G4080 Aethionema arabicum HOM05D005308 ORTHO05D006494 1.9e-185 653.3 593 57.8
DCAR_019524 Daucus carota HOM05D005308 ORTHO05D006494 7.4e-182 641.3 592 57.4
Carub.0001s1896 Capsella rubella HOM05D005308 ORTHO05D006494 2.8e-181 639.4 594 57.4
Sp1g17280 Schrenkiella parvula HOM05D005308 ORTHO05D006494 3.7e-181 639.0 589 56.4
HanXRQChr05g0151851 Helianthus annuus HOM05D005308 ORTHO05D006494 1.1e-180 637.5 602 57.8
AL1G31960 Arabidopsis lyrata HOM05D005308 ORTHO05D006494 4.1e-180 635.6 585 56.4
AT1G19370 Arabidopsis thaliana HOM05D005308 ORTHO05D006494 4.1e-180 635.6 590 56.6
Migut.I00006 Erythranthe guttata HOM05D005308 ORTHO05D006494 4.1e-180 635.6 618 55.8
BcaB02g06995 Brassica carinata HOM05D005308 ORTHO05D006494 5.3e-180 635.2 585 58.3
PSO782G4716 Papaver somniferum HOM05D005308 ORTHO05D006494 9.1e-180 634.4 665 52.6
BolC6t38403H Brassica oleracea HOM05D005308 ORTHO05D006494 1.2e-179 634.0 586 58.2
C06p32820 Brassica napus HOM05D005308 ORTHO05D006494 2.0e-179 633.3 585 58.1
BraA06t24665Z Brassica rapa HOM05D005308 ORTHO05D006494 7.7e-179 631.3 597 57.0
PSO063G3485 Papaver somniferum HOM05D005308 ORTHO05D006494 7.7e-179 631.3 665 52.5
A06p15530 Brassica napus HOM05D005308 ORTHO05D006494 3.8e-178 629.0 597 56.6
CARHR019960 Cardamine hirsuta HOM05D005308 ORTHO05D006494 5.0e-178 628.6 567 58.9
BolC5t30482H Brassica oleracea HOM05D005308 ORTHO05D006494 8.5e-178 627.9 546 59.9
CSS0028044 Camellia sinensis var. sinensis HOM05D005308 ORTHO05D006494 2.5e-177 626.3 445 71.7
Nn3g19273 Nelumbo nucifera HOM05D005308 ORTHO05D006494 1.6e-176 623.6 535 61.7
BraA07t30544Z Brassica rapa HOM05D005308 ORTHO05D006494 2.7e-176 622.9 592 57.3
A07p29040 Brassica napus HOM05D005308 ORTHO05D006494 6.1e-176 621.7 592 57.1
DCAR_020966 Daucus carota HOM05D005308 ORTHO05D006494 6.1e-176 621.7 551 60.6
BcaB07g31957 Brassica carinata HOM05D005308 ORTHO05D006494 5.2e-175 618.6 597 56.8
BcaB02g07009 Brassica carinata HOM05D005308 ORTHO05D006494 1.1e-174 617.5 594 58.4
ECA246G5303 Erigeron canadensis HOM05D005308 ORTHO05D006494 1.7e-173 613.6 544 59.7
Aa31LG4G5330 Aethionema arabicum HOM05D005308 ORTHO05D006494 7.0e-172 608.2 564 56.4
Thhalv10009294m.g Eutrema salsugineum HOM05D005308 ORTHO05D006494 9.4e-169 597.8 596 55.2
Lsat_1_v5_gn_5_29021 Lactuca sativa HOM05D005308 ORTHO05D006494 1.0e-162 577.8 515 58.6
MBI04_g27271_MAGBIO Magnolia biondii HOM05D005308 ORTHO05D006494 5.0e-162 575.5 605 52.9
CDE11G0691 Ceratophyllum demersum HOM05D005308 ORTHO05D006494 5.5e-161 572.0 603 51.6
SGA_v2.0_scaffold90G27910 Striga asiatica HOM05D005308 ORTHO05D006494 3.9e-146 522.7 619 48.0
ATR0829G103 Amborella trichopoda HOM05D005308 ORTHO05D006494 4.3e-145 519.2 581 50.1
SEGI_39092 Sequoiadendron giganteum HOM05D005308 ORTHO05D006494 8.0e-144 515.0 625 45.6
SHI08167 Sapria himalayana HOM05D005308 ORTHO05D006494 4.9e-141 505.8 512 54.5
MBI04_g21134_MAGBIO Magnolia biondii HOM05D005308 ORTHO05D006494 3.3e-137 493.0 587 48.7
Os06g0115200 Oryza sativa ssp. japonica HOM05D005308 ORTHO05D006494 3.0e-122 443.4 622 41.2
Actinidia38015 Actinidia chinensis HOM05D005308 ORTHO05D006494 2.6e-118 430.3 611 45.8
Zm00001eb269050 Zea mays HOM05D005308 ORTHO05D006494 3.4e-118 429.9 618 40.8
C05p17770 Brassica napus HOM05D005308 ORTHO05D006494 3.4e-102 376.7 266 68.4
Pp3c20_21760 Physcomitrium patens HOM05D005308 ORTHO05D006494 1.0e-93 348.6 549 39.5
BcaNung07223 Brassica carinata HOM05D005308 ORTHO05D006494 1.3e-93 348.2 331 57.4
AagrBONN_evm.TU.Sc2ySwM_228.2792 Anthoceros agrestis HOM05D005308 ORTHO05D006494 1.7e-93 347.8 467 40.9
BcaNung07297 Brassica carinata HOM05D005308 ORTHO05D006494 4.9e-93 346.3 240 69.2
Pp3c10_23930 Physcomitrium patens HOM05D005308 ORTHO05D006494 2.5e-92 344.0 548 38.5
Mapoly0094s0054 Marchantia polymorpha HOM05D005308 ORTHO05D006494 1.0e-90 338.6 571 37.3
SMO361G0791 Selaginella moellendorffii HOM05D005308 ORTHO05D006494 1.3e-88 331.6 416 44.0
BcaB02g07002 Brassica carinata HOM05D005308 ORTHO05D006494 1.4e-84 318.2 219 69.4
unitig_0.g1436 Utricularia gibba HOM05D005308 ORTHO05D006494 1.0e-77 295.4 313 50.8
unitig_0.g1437 Utricularia gibba HOM05D005308 ORTHO05D006494 5.0e-53 213.4 255 48.2
A07p29060 Brassica napus HOM05D005308 ORTHO05D006494 3.6e-51 207.2 130 74.6
MCO12G330 Micromonas commoda HOM05D005308 ORTHO05D006494 2.1e-19 101.7 548 21.7
BcaC07g37382 Brassica carinata HOM05D005308 ORTHO05D006494 1.9e-07 62.0 64 51.6
CBR_g49554 Chara braunii HOM05D005308 ORTHO05D006494 1.2e-06 59.3 101 32.7
SHI17314 Sapria himalayana HOM05D005308 ORTHO05D006494 1.6e-06 58.9 139 32.4


User provided reference genes

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