Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_2g39030 Fragaria vesca HOM05D004539 ORTHO05D005482 1.6e-251 872.5 505 100.0
FAN27G2077 Fragaria x ananassa HOM05D004539 ORTHO05D005482 1.3e-237 826.2 509 95.1
FAN15G3183 Fragaria x ananassa HOM05D004539 ORTHO05D005482 5.6e-236 820.8 509 94.5
FAN20G1687 Fragaria x ananassa HOM05D004539 ORTHO05D005482 6.2e-235 817.4 509 93.1
RcHm_v2.0_Chr6g0302141 Rosa chinensis HOM05D004539 ORTHO05D005482 8.1e-211 737.3 506 85.4
FvH4_7g07450 Fragaria vesca HOM05D004539 ORTHO05D005482 2.7e-150 536.2 382 85.3
FAN10G3704 Fragaria x ananassa HOM05D004539 ORTHO05D005482 4.2e-135 485.7 380 79.5
Prupe.1G370700 Prunus persica HOM05D004539 ORTHO05D005482 4.4e-132 475.7 546 54.0
MD08G1018100 Malus domestica HOM05D004539 ORTHO05D005482 5.6e-127 458.8 556 55.0
MD15G1017400 Malus domestica HOM05D004539 ORTHO05D005482 3.0e-125 453.0 551 55.0
CiPaw.08G062700 Carya illinoinensis HOM05D004539 ORTHO05D005482 3.5e-113 412.9 555 51.9
CANSAT54G2989 Cannabis sativa HOM05D004539 ORTHO05D005482 6.0e-113 412.1 554 48.9
Atru.chr13.359 Acer truncatum HOM05D004539 ORTHO05D005482 7.8e-113 411.8 540 52.6
Thecc.04G277100 Theobroma cacao HOM05D004539 ORTHO05D005482 2.3e-112 410.2 552 53.1
Duzib192G0399 Durio zibethinus HOM05D004539 ORTHO05D005482 6.6e-112 408.7 553 47.6
Cfa013903 Carpinus fangiana HOM05D004539 ORTHO05D005482 5.6e-111 405.6 539 54.7
Ciclev10004791m.g Citrus clementina HOM05D004539 ORTHO05D005482 1.2e-110 404.4 526 54.4
Haze_22584 Corylus avellana HOM05D004539 ORTHO05D005482 3.6e-110 402.9 531 55.4
Potri.005G234800 Populus trichocarpa HOM05D004539 ORTHO05D005482 3.6e-110 402.9 558 51.4
COL.COLO4_16338 Corchorus olitorius HOM05D004539 ORTHO05D005482 1.4e-109 401.0 546 46.7
Sabra05G0181000 Salix brachista HOM05D004539 ORTHO05D005482 1.4e-109 401.0 563 50.8
COL.COLO4_38586 Corchorus olitorius HOM05D004539 ORTHO05D005482 6.8e-109 398.7 552 46.7
Gorai.001G253500 Gossypium raimondii HOM05D004539 ORTHO05D005482 1.2e-108 397.9 549 47.5
Gohir.D07G219000 Gossypium hirsutum HOM05D004539 ORTHO05D005482 1.5e-108 397.5 549 47.5
Lj1g0010849 Lotus japonicus HOM05D004539 ORTHO05D005482 5.8e-108 395.6 541 49.5
Lalb_Chr03g0033831 Lupinus albus HOM05D004539 ORTHO05D005482 5.8e-108 395.6 525 48.4
Phvul.003G186400 Phaseolus vulgaris HOM05D004539 ORTHO05D005482 5.8e-108 395.6 540 51.3
Rhsim06G0026400 Rhododendron simsii HOM05D004539 ORTHO05D005482 2.9e-107 393.3 558 50.5
Gohir.A07G212900 Gossypium hirsutum HOM05D004539 ORTHO05D005482 8.3e-107 391.7 549 47.4
Psat7g263720 Pisum sativum HOM05D004539 ORTHO05D005482 2.4e-106 390.2 535 52.7
TAR629G0090 Trochodendron aralioides HOM05D004539 ORTHO05D005482 3.2e-106 389.8 568 47.2
DCAR_013849 Daucus carota HOM05D004539 ORTHO05D005482 4.1e-106 389.4 547 47.7
Manes.05G152500 Manihot esculenta HOM05D004539 ORTHO05D005482 5.4e-106 389.0 558 47.7
Glyma.05G023000 Glycine max HOM05D004539 ORTHO05D005482 7.8e-105 385.2 543 49.4
arahy.Tifrunner.gnm1.ann1.D3BLAG Arachis hypogaea HOM05D004539 ORTHO05D005482 1.0e-104 384.8 568 48.2
Sabra02G0022100 Salix brachista HOM05D004539 ORTHO05D005482 1.0e-104 384.8 548 49.5
VMungo1215G0403 Vigna mungo HOM05D004539 ORTHO05D005482 1.0e-104 384.8 538 51.7
vmacro21700 Vaccinium macrocarpon HOM05D004539 ORTHO05D005482 1.3e-104 384.4 560 50.0
Cpa.g.sc147.12 Carica papaya HOM05D004539 ORTHO05D005482 2.3e-104 383.6 564 45.7
Sed0008828 Sechium edule HOM05D004539 ORTHO05D005482 6.6e-104 382.1 544 49.8
GSVIVG01009825001 Vitis vinifera HOM05D004539 ORTHO05D005482 8.6e-104 381.7 528 50.6
Ca_11952_v3 Cicer arietinum L. HOM05D004539 ORTHO05D005482 5.6e-103 379.0 546 52.0
Glyma.17G076700 Glycine max HOM05D004539 ORTHO05D005482 9.5e-103 378.3 542 51.1
Dinv39486 Davidia involucrata HOM05D004539 ORTHO05D005482 2.1e-102 377.1 549 47.7
Cpa.g.sc140.19 Carica papaya HOM05D004539 ORTHO05D005482 1.1e-101 374.8 563 49.2
TPR.G5561 Trifolium pratense HOM05D004539 ORTHO05D005482 2.3e-101 373.6 531 50.8
Sed0017053 Sechium edule HOM05D004539 ORTHO05D005482 1.2e-100 371.3 556 48.6
TWI60G0405 Tripterygium wilfordii HOM05D004539 ORTHO05D005482 4.4e-100 369.4 559 46.2
Medtr4g022890 Medicago truncatula HOM05D004539 ORTHO05D005482 5.8e-100 369.0 531 54.2
Ciclev10011488m.g Citrus clementina HOM05D004539 ORTHO05D005482 9.9e-100 368.2 519 51.4
Dinv31810 Davidia involucrata HOM05D004539 ORTHO05D005482 9.9e-100 368.2 551 44.3
PGR031G2058 Punica granatum HOM05D004539 ORTHO05D005482 2.9e-99 366.7 540 46.5
Thhalv10010315m.g Eutrema salsugineum HOM05D004539 ORTHO05D005482 4.9e-99 365.9 522 48.7
FAN22G0834 Fragaria x ananassa HOM05D004539 ORTHO05D005482 6.4e-99 365.5 267 76.0
arahy.Tifrunner.gnm1.ann1.ME0SR7 Arachis hypogaea HOM05D004539 ORTHO05D005482 8.4e-99 365.2 550 46.0
Ca_22519_v3 Cicer arietinum L. HOM05D004539 ORTHO05D005482 1.1e-98 364.8 542 53.5
Hma1.2p1_0773F.1_g216150 Hydrangea macrophylla HOM05D004539 ORTHO05D005482 9.2e-98 361.7 553 47.0
Lj4A486G10 Lonicera japonica HOM05D004539 ORTHO05D005482 7.8e-97 358.6 603 43.4
SGA_v2.0_scaffold4G01895 Striga asiatica HOM05D004539 ORTHO05D005482 1.0e-96 358.2 537 45.3
SGA_v2.0_scaffold92G28288 Striga asiatica HOM05D004539 ORTHO05D005482 1.0e-96 358.2 537 45.3
CsaV3_3G001200 Cucumis sativus L. HOM05D004539 ORTHO05D005482 1.3e-96 357.8 555 48.8
SalBow6G1219 Salvia bowleyana HOM05D004539 ORTHO05D005482 3.3e-95 353.2 529 45.7
CAN.G851.13 Capsicum annuum HOM05D004539 ORTHO05D005482 4.3e-95 352.8 533 50.5
Migut.C00791 Erythranthe guttata HOM05D004539 ORTHO05D005482 1.2e-94 351.3 522 45.4
AUR62034567 Chenopodium quinoa HOM05D004539 ORTHO05D005482 1.6e-94 350.9 528 50.0
AUR62042221 Chenopodium quinoa HOM05D004539 ORTHO05D005482 1.6e-94 350.9 528 50.0
Hund17219 Selenicereus undatus HOM05D004539 ORTHO05D005482 2.1e-94 350.5 551 44.3
Lj2g0012026 Lotus japonicus HOM05D004539 ORTHO05D005482 8.1e-94 348.6 544 47.4
Nn6g32243 Nelumbo nucifera HOM05D004539 ORTHO05D005482 8.1e-94 348.6 568 41.4
Nitab4.5_0012730g0010 Nicotiana tabacum HOM05D004539 ORTHO05D005482 1.1e-93 348.2 537 49.2
MELO3C013810.2 Cucumis melo HOM05D004539 ORTHO05D005482 5.2e-93 345.9 554 47.7
Lj4C484T3 Lonicera japonica HOM05D004539 ORTHO05D005482 5.2e-93 345.9 502 45.8
THA.LOC104813189 Tarenaya hassleriana HOM05D004539 ORTHO05D005482 1.5e-92 344.4 539 46.6
Carub.0005s1635 Capsella rubella HOM05D004539 ORTHO05D005482 2.0e-92 344.0 515 47.4
AUR62014430 Chenopodium quinoa HOM05D004539 ORTHO05D005482 4.4e-92 342.8 528 50.0
Cc10_g02110 Coffea canephora HOM05D004539 ORTHO05D005482 4.4e-92 342.8 549 45.0
Aa31LG4G18400 Aethionema arabicum HOM05D004539 ORTHO05D005482 1.7e-91 340.9 526 49.0
Hund26867 Selenicereus undatus HOM05D004539 ORTHO05D005482 2.2e-91 340.5 545 41.7
TAR628G0025 Trochodendron aralioides HOM05D004539 ORTHO05D005482 2.9e-91 340.1 569 43.9
AL5G30050 Arabidopsis lyrata HOM05D004539 ORTHO05D005482 3.8e-91 339.7 534 42.1
EL10Ac1g00555 Beta vulgaris HOM05D004539 ORTHO05D005482 3.8e-91 339.7 522 49.8
Sp5g12110 Schrenkiella parvula HOM05D004539 ORTHO05D005482 3.8e-91 339.7 521 47.8
ClCG05G018590 Citrullus lanatus HOM05D004539 ORTHO05D005482 6.4e-91 339.0 617 43.3
Oeu036929.3 Olea europaea HOM05D004539 ORTHO05D005482 1.1e-90 338.2 567 41.4
FAN06G2453 Fragaria x ananassa HOM05D004539 ORTHO05D005482 1.4e-90 337.8 242 84.7
AT3G49990 Arabidopsis thaliana HOM05D004539 ORTHO05D005482 5.4e-90 335.9 527 45.7
A03p47640 Brassica napus HOM05D004539 ORTHO05D005482 9.3e-90 335.1 513 48.5
Sc02g0002900 Simmondsia chinensis HOM05D004539 ORTHO05D005482 2.1e-89 334.0 546 45.6
BraA03t13876Z Brassica rapa HOM05D004539 ORTHO05D005482 2.7e-89 333.6 516 47.5
BcaC06g33116 Brassica carinata HOM05D004539 ORTHO05D005482 3.5e-89 333.2 527 47.4
ECA232G1826 Erigeron canadensis HOM05D004539 ORTHO05D005482 3.5e-89 333.2 523 46.3
Solyc04g081030.3 Solanum lycopersicum HOM05D004539 ORTHO05D005482 3.5e-89 333.2 465 47.1
BolC7t45082H Brassica oleracea HOM05D004539 ORTHO05D005482 4.6e-89 332.8 515 47.8
PSO541G3108 Papaver somniferum HOM05D004539 ORTHO05D005482 5.1e-88 329.3 544 45.4
PSO675G8916 Papaver somniferum HOM05D004539 ORTHO05D005482 1.9e-87 327.4 537 44.9
MSTRG.25219 Avicennia marina HOM05D004539 ORTHO05D005482 4.3e-87 326.2 526 43.3
BcaC06g33276 Brassica carinata HOM05D004539 ORTHO05D005482 4.3e-87 326.2 524 47.3
C07p45610 Brassica napus HOM05D004539 ORTHO05D005482 4.3e-87 326.2 524 47.3
Lsat_1_v5_gn_4_116341 Lactuca sativa HOM05D004539 ORTHO05D005482 6.2e-86 322.4 545 41.8
unitig_578.g16661 Utricularia gibba HOM05D004539 ORTHO05D005482 8.1e-86 322.0 520 41.9
Ah.02g124950 Amaranthus hybridus HOM05D004539 ORTHO05D005482 1.1e-85 321.6 517 48.9
Sopen04g034650 Solanum pennellii HOM05D004539 ORTHO05D005482 2.4e-85 320.5 472 45.6
CARHR159060 Cardamine hirsuta HOM05D004539 ORTHO05D005482 3.1e-85 320.1 535 46.0
Actinidia29798 Actinidia chinensis HOM05D004539 ORTHO05D005482 9.0e-85 318.5 537 44.5
FAN01G2597 Fragaria x ananassa HOM05D004539 ORTHO05D005482 2.9e-83 313.5 201 89.6
PGSC0003DMG400003712 Solanum tuberosum HOM05D004539 ORTHO05D005482 1.1e-82 311.6 517 42.4
Aqoxy7G01402 Aquilegia oxysepala HOM05D004539 ORTHO05D005482 7.1e-82 308.9 506 42.5
Peaxi162Scf00287g00122 Petunia axillaris HOM05D004539 ORTHO05D005482 2.7e-81 307.0 468 44.4
ATR0691G247 Amborella trichopoda HOM05D004539 ORTHO05D005482 4.6e-81 306.2 558 39.8
CDE12G0120 Ceratophyllum demersum HOM05D004539 ORTHO05D005482 5.3e-77 292.7 563 38.5
HanXRQChr09g0269371 Helianthus annuus HOM05D004539 ORTHO05D005482 6.4e-75 285.8 406 47.0
Lj4C792T1 Lonicera japonica HOM05D004539 ORTHO05D005482 1.6e-73 281.2 554 40.8
QL02p010726 Quercus lobata HOM05D004539 ORTHO05D005482 1.3e-72 278.1 297 56.2
HPP92_016110 Vanilla planifolia HOM05D004539 ORTHO05D005482 1.1e-71 275.0 560 37.7
Oeu030391.1 Olea europaea HOM05D004539 ORTHO05D005482 3.1e-69 266.9 523 39.6
Cpa.g.sc1191.1 Carica papaya HOM05D004539 ORTHO05D005482 1.6e-65 254.6 295 52.9
MBI05_g04844_MAGBIO Magnolia biondii HOM05D004539 ORTHO05D005482 5.1e-64 249.6 726 34.4
CAN.G851.15 Capsicum annuum HOM05D004539 ORTHO05D005482 1.3e-62 245.0 401 43.4
FAN05G0730 Fragaria x ananassa HOM05D000664 ORTHO05D000491 4.5e-60 236.5 232 65.9
Zm00001eb018110 Zea mays HOM05D004539 ORTHO05D005482 1.9e-58 231.1 518 42.5
Eucgr.E04075 Eucalyptus grandis HOM05D004539 ORTHO05D005482 1.2e-57 228.4 317 45.7
Zm00001eb394100 Zea mays HOM05D004539 ORTHO05D005482 7.9e-57 225.7 513 41.7
Zm00001eb394110 Zea mays HOM05D004539 ORTHO05D005482 7.9e-57 225.7 513 41.7
Os03g0372700 Oryza sativa ssp. japonica HOM05D004539 ORTHO05D005482 1.9e-55 221.1 515 41.4
SEGI_17236 Sequoiadendron giganteum HOM05D004539 ORTHO05D005482 2.5e-55 220.7 588 32.7
Pp3c26_3100 Physcomitrium patens HOM05D004539 ORTHO05D005482 4.2e-42 176.8 573 33.3
Nitab4.5_0006718g0010 Nicotiana tabacum HOM05D004539 ORTHO05D005482 7.9e-41 172.6 184 57.1
SHI27908 Sapria himalayana HOM05D004539 ORTHO05D005482 1.3e-38 165.2 292 41.8
TAR628G0156 Trochodendron aralioides HOM05D004539 ORTHO05D005482 4.8e-38 163.3 155 65.8
Mapoly0079s0035 Marchantia polymorpha HOM05D004539 ORTHO05D005482 4.5e-36 156.8 586 29.7
CBR_g23809 Chara braunii HOM05D004539 ORTHO05D005482 1.1e-29 135.6 645 27.0
QL02p010735 Quercus lobata HOM05D004539 ORTHO05D005482 1.4e-29 135.2 227 51.5
SEGI_09517 Sequoiadendron giganteum HOM05D004539 ORTHO05D005482 2.5e-26 124.4 425 29.4
AagrBONN_evm.TU.Sc2ySwM_344.1857 Anthoceros agrestis HOM05D004539 ORTHO05D005482 2.2e-22 111.3 485 28.7
CDE04G1317 Ceratophyllum demersum HOM05D004539 ORTHO05D009003 1.4e-21 108.6 412 27.7
MELO3C004859.2 Cucumis melo HOM05D004539 ORTHO05D005482 5.0e-19 100.1 88 56.8
Os07g0634300 Oryza sativa ssp. japonica HOM05D004539 ORTHO05D005482 2.1e-17 94.7 220 35.5
Zm00001eb328540 Zea mays HOM05D004539 ORTHO05D005482 1.1e-13 82.4 444 25.9
Potri.002G028100 Populus trichocarpa HOM05D004539 ORTHO05D005482 7.0e-13 79.7 131 46.6
MELO3C014949.2 Cucumis melo HOM05D004539 ORTHO05D005482 1.6e-12 78.6 118 42.4
TAR369G0231 Trochodendron aralioides HOM05D004539 ORTHO05D005482 2.0e-12 78.2 102 47.1
AagrBONN_evm.TU.Sc2ySwM_344.3799 Anthoceros agrestis HOM05D004539 ORTHO05D005482 4.5e-12 77.0 406 26.4
BcaB05g23177 Brassica carinata HOM05D004539 ORTHO05D005482 3.8e-11 73.9 115 42.6
SMO367G1003 Selaginella moellendorffii HOM05D004539 ORTHO05D005482 1.5e-10 72.0 120 37.5
PRCOL_00001157 Prasinoderma coloniale HOM05D004539 ORTHO05D005482 4.3e-10 70.5 359 26.7
Rhsim06G0017000 Rhododendron simsii HOM05D004539 ORTHO05D005482 2.1e-09 68.2 148 37.8
Rhsim06G0016800 Rhododendron simsii HOM05D004539 ORTHO05D005482 1.0e-08 65.9 187 34.8
RcHm_v2.0_Chr1g0360321 Rosa chinensis HOM05D004539 ORTHO05D005482 2.0e-07 61.6 43 79.1


User provided reference genes

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