Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_2g38650 Fragaria vesca HOM05D005146 ORTHO05D006752 1.7e-154 549.3 274 100.0
FAN27G1976 Fragaria x ananassa HOM05D005146 ORTHO05D006752 1.1e-153 546.6 274 99.3
FAN15G2679 Fragaria x ananassa HOM05D005146 ORTHO05D006752 1.9e-153 545.8 274 99.3
FAN20G2808 Fragaria x ananassa HOM05D005146 ORTHO05D006752 4.6e-152 541.2 274 98.5
RcHm_v2.0_Chr6g0302671 Rosa chinensis HOM05D005146 ORTHO05D006752 1.0e-151 540.0 274 97.8
MD15G1013600 Malus domestica HOM05D005146 ORTHO05D006752 3.9e-143 511.5 271 92.3
Prupe.1G367100 Prunus persica HOM05D005146 ORTHO05D006752 8.7e-143 510.4 271 91.9
MD08G1014100 Malus domestica HOM05D005146 ORTHO05D006752 1.2e-139 500.0 271 90.0
Haze_04102 Corylus avellana HOM05D005146 ORTHO05D006752 6.7e-135 484.2 271 86.7
Cfa006669 Carpinus fangiana HOM05D005146 ORTHO05D006752 3.3e-134 481.9 271 86.7
CANSAT11G0704 Cannabis sativa HOM05D005146 ORTHO05D006752 5.7e-134 481.1 271 85.6
Sp7g29580 Schrenkiella parvula HOM05D005146 ORTHO05D006752 7.4e-134 480.7 272 84.6
Carub.0007s0877 Capsella rubella HOM05D005146 ORTHO05D006752 1.3e-133 479.9 272 84.6
Cc10_g01800 Coffea canephora HOM05D005146 ORTHO05D006752 1.3e-133 479.9 271 86.0
BcaNung05185 Brassica carinata HOM05D005146 ORTHO05D006752 1.6e-133 479.6 272 84.6
QL02p011373 Quercus lobata HOM05D005146 ORTHO05D006752 1.6e-133 479.6 271 84.9
AT4G31790 Arabidopsis thaliana HOM05D005146 ORTHO05D006752 2.2e-133 479.2 272 84.9
BcaC09g51970 Brassica carinata HOM05D005146 ORTHO05D006752 2.2e-133 479.2 272 84.6
BolC1t00708H Brassica oleracea HOM05D005146 ORTHO05D006752 2.2e-133 479.2 272 84.6
CiPaw.07G151400 Carya illinoinensis HOM05D005146 ORTHO05D006752 3.7e-133 478.4 271 84.5
BraA01t00610Z Brassica rapa HOM05D005146 ORTHO05D006752 6.3e-133 477.6 272 84.2
GSVIVG01009887001 Vitis vinifera HOM05D005146 ORTHO05D006752 1.1e-132 476.9 271 84.9
Thhalv10025950m.g Eutrema salsugineum HOM05D005146 ORTHO05D006752 1.8e-132 476.1 272 84.9
Atru.chr13.312 Acer truncatum HOM05D005146 ORTHO05D006752 2.4e-132 475.7 271 84.1
Rhsim06G0022400 Rhododendron simsii HOM05D005146 ORTHO05D006752 2.4e-132 475.7 270 85.2
AL7G20220 Arabidopsis lyrata HOM05D005146 ORTHO05D006752 3.1e-132 475.3 272 84.6
A01p06490 Brassica napus HOM05D005146 ORTHO05D006752 3.1e-132 475.3 272 83.8
C01p07160 Brassica napus HOM05D005146 ORTHO05D006752 4.1e-132 474.9 272 84.2
CARHR239690 Cardamine hirsuta HOM05D005146 ORTHO05D006752 5.3e-132 474.6 272 84.6
Ciclev10002090m.g Citrus clementina HOM05D005146 ORTHO05D006752 9.1e-132 473.8 271 84.5
Aa31LG2G18510 Aethionema arabicum HOM05D005146 ORTHO05D006752 1.5e-131 473.0 272 83.1
Manes.11G065850 Manihot esculenta HOM05D005146 ORTHO05D006752 3.4e-131 471.9 271 83.0
Thecc.09G245400 Theobroma cacao HOM05D005146 ORTHO05D006752 4.5e-131 471.5 271 82.7
Actinidia15413 Actinidia chinensis HOM05D005146 ORTHO05D006752 5.9e-131 471.1 270 84.8
PGSC0003DMG400003775 Solanum tuberosum HOM05D005146 ORTHO05D006752 5.9e-131 471.1 270 83.0
CAN.G311.14 Capsicum annuum HOM05D005146 ORTHO05D006752 7.7e-131 470.7 270 83.0
DCAR_009928 Daucus carota HOM05D005146 ORTHO05D006752 7.7e-131 470.7 270 84.1
Solyc04g081310.3 Solanum lycopersicum HOM05D005146 ORTHO05D006752 7.7e-131 470.7 270 83.3
Sopen04g034930 Solanum pennellii HOM05D005146 ORTHO05D006752 7.7e-131 470.7 270 83.3
TWI56G0936 Tripterygium wilfordii HOM05D005146 ORTHO05D006752 1.3e-130 469.9 271 84.1
Manes.05G148600 Manihot esculenta HOM05D005146 ORTHO05D006752 1.7e-130 469.5 271 83.0
Dinv31832 Davidia involucrata HOM05D005146 ORTHO05D006752 2.2e-130 469.2 270 84.4
Potri.002G023700 Populus trichocarpa HOM05D005146 ORTHO05D006752 2.9e-130 468.8 271 81.2
Ca_14210_v3 Cicer arietinum L. HOM05D005146 ORTHO05D006752 3.8e-130 468.4 271 81.9
Nitab4.5_0001540g0020 Nicotiana tabacum HOM05D005146 ORTHO05D006752 3.8e-130 468.4 270 82.6
Gohir.A08G010500 Gossypium hirsutum HOM05D005146 ORTHO05D006752 5.0e-130 468.0 271 81.5
Medtr3g113750 Medicago truncatula HOM05D005146 ORTHO05D006752 5.0e-130 468.0 271 83.0
CsaV3_2G029420 Cucumis sativus L. HOM05D005146 ORTHO05D006752 8.5e-130 467.2 272 81.6
PGR083G0855 Punica granatum HOM05D005146 ORTHO05D006752 8.5e-130 467.2 271 82.7
ECA238G2776 Erigeron canadensis HOM05D005146 ORTHO05D006752 2.5e-129 465.7 271 81.5
Gohir.D08G020900 Gossypium hirsutum HOM05D005146 ORTHO05D006752 2.5e-129 465.7 271 81.5
Nn6g32362 Nelumbo nucifera HOM05D005146 ORTHO05D006752 4.2e-129 464.9 270 82.6
TPR.G34539 Trifolium pratense HOM05D005146 ORTHO05D006752 7.2e-129 464.2 271 80.8
THA.LOC104825772 Tarenaya hassleriana HOM05D005146 ORTHO05D006752 9.4e-129 463.8 271 80.4
Lsat_1_v5_gn_2_8601 Lactuca sativa HOM05D005146 ORTHO05D006752 1.2e-128 463.4 271 80.8
PSO700G0287 Papaver somniferum HOM05D005146 ORTHO05D006752 1.2e-128 463.4 270 82.2
Sabra02G0019300 Salix brachista HOM05D005146 ORTHO05D006752 1.2e-128 463.4 271 80.4
Cpa.g.sc1059.3 Carica papaya HOM05D005146 ORTHO05D006752 1.6e-128 463.0 271 81.9
HanXRQChr06g0183611 Helianthus annuus HOM05D005146 ORTHO05D006752 2.7e-128 462.2 272 80.5
Lalb_Chr23g0266181 Lupinus albus HOM05D005146 ORTHO05D006752 2.7e-128 462.2 271 81.2
VMungo0251G0853 Vigna mungo HOM05D005146 ORTHO05D006752 6.1e-128 461.1 271 81.2
PSO170G4907 Papaver somniferum HOM05D005146 ORTHO05D006752 7.9e-128 460.7 269 82.2
Glyma.07G217500 Glycine max HOM05D005146 ORTHO05D006752 1.0e-127 460.3 271 81.9
Eucgr.F01641 Eucalyptus grandis HOM05D005146 ORTHO05D006752 1.4e-127 459.9 271 81.2
Migut.N03153 Erythranthe guttata HOM05D005146 ORTHO05D006752 3.0e-127 458.8 271 80.4
Psat5g013440 Pisum sativum HOM05D005146 ORTHO05D006752 3.0e-127 458.8 271 80.1
Sed0001191 Sechium edule HOM05D005146 ORTHO05D006752 3.0e-127 458.8 272 79.0
Glyma.20G014100 Glycine max HOM05D005146 ORTHO05D006752 8.8e-127 457.2 271 81.5
Phvul.001G002400 Phaseolus vulgaris HOM05D005146 ORTHO05D006752 1.1e-126 456.8 271 81.5
CSS0007392 Camellia sinensis var. sinensis HOM05D005146 ORTHO05D006752 2.6e-126 455.7 270 82.2
CSS0032974 Camellia sinensis var. sinensis HOM05D005146 ORTHO05D006752 2.6e-126 455.7 270 82.2
Lj1g0002754 Lotus japonicus HOM05D005146 ORTHO05D006752 9.7e-126 453.8 271 81.2
Hund05199 Selenicereus undatus HOM05D005146 ORTHO05D006752 1.1e-124 450.3 270 79.3
EL10Ac6g13895 Beta vulgaris HOM05D005146 ORTHO05D006752 2.4e-124 449.1 304 74.3
SGA_v2.0_scaffold12G05971 Striga asiatica HOM05D005146 ORTHO05D006752 6.9e-124 447.6 271 78.2
Ah.08g209140 Amaranthus hybridus HOM05D005146 ORTHO05D006752 2.2e-122 442.6 302 73.5
arahy.Tifrunner.gnm1.ann1.RM6BI2 Arachis hypogaea HOM05D005146 ORTHO05D006752 1.4e-121 439.9 271 77.5
COL.COLO4_37538 Corchorus olitorius HOM05D005146 ORTHO05D006752 1.4e-121 439.9 257 81.3
Oeu020876.1 Olea europaea HOM05D005146 ORTHO05D006752 1.4e-121 439.9 262 80.2
arahy.Tifrunner.gnm1.ann1.DQ6KFY Arachis hypogaea HOM05D005146 ORTHO05D006752 1.9e-121 439.5 271 77.9
AUR62019460 Chenopodium quinoa HOM05D005146 ORTHO05D006752 1.9e-121 439.5 270 78.9
Os03g0355800 Oryza sativa ssp. japonica HOM05D005146 ORTHO05D006752 2.5e-121 439.1 270 76.7
ATR0797G002 Amborella trichopoda HOM05D005146 ORTHO05D006752 4.2e-121 438.3 270 77.0
Aqoxy5G01768 Aquilegia oxysepala HOM05D005146 ORTHO05D006752 7.2e-121 437.6 270 77.0
arahy.Tifrunner.gnm1.ann1.VN499F Arachis hypogaea HOM05D005146 ORTHO05D006752 1.2e-120 436.8 271 77.5
Lj5g0000481 Lotus japonicus HOM05D005146 ORTHO05D006752 7.9e-120 434.1 271 77.5
unitig_746.g26814 Utricularia gibba HOM05D005146 ORTHO05D006752 1.4e-119 433.3 270 76.3
RcHm_v2.0_Chr7g0221331 Rosa chinensis HOM05D005146 ORTHO05D006752 1.8e-119 433.0 274 82.5
HPP92_027733 Vanilla planifolia HOM05D005146 ORTHO05D006752 3.0e-119 432.2 271 74.9
ClCG08G014400 Citrullus lanatus HOM05D005146 ORTHO05D006752 1.1e-118 430.3 272 75.4
Duzib150G0501 Durio zibethinus HOM05D005146 ORTHO05D006752 3.3e-118 428.7 271 77.5
Zm00001eb017150 Zea mays HOM05D005146 ORTHO05D006752 4.4e-118 428.3 270 75.2
arahy.Tifrunner.gnm1.ann1.NX94TN Arachis hypogaea HOM05D005146 ORTHO05D006752 3.1e-116 422.2 301 69.4
Aqoxy6G00492 Aquilegia oxysepala HOM05D005146 ORTHO05D006752 7.0e-116 421.0 261 76.2
MELO3C011001.2 Cucumis melo HOM05D005146 ORTHO05D006752 4.5e-115 418.3 284 72.5
Mapoly0107s0028 Marchantia polymorpha HOM05D005146 ORTHO05D006752 1.3e-114 416.8 271 72.0
Gorai.004G015300 Gossypium raimondii HOM05D005146 ORTHO05D006752 2.2e-114 416.0 271 74.5
MBI09_g15694_MAGBIO Magnolia biondii HOM05D005146 ORTHO05D006752 2.2e-114 416.0 381 58.0
AagrBONN_evm.TU.Sc2ySwM_117.1420 Anthoceros agrestis HOM05D005146 ORTHO05D006752 1.5e-113 413.3 274 70.1
Pp3c25_4490 Physcomitrium patens HOM05D005146 ORTHO05D006752 1.2e-112 410.2 271 70.8
AagrBONN_evm.TU.Sc2ySwM_368.2751 Anthoceros agrestis HOM05D005146 ORTHO05D006752 1.6e-112 409.8 274 69.7
Peaxi162Scf00438g00626 Petunia axillaris HOM05D005146 ORTHO05D006752 4.0e-111 405.2 270 74.1
CDE05G1835 Ceratophyllum demersum HOM05D005146 ORTHO05D006752 9.7e-110 400.6 241 79.7
SalBow3G2629 Salvia bowleyana HOM05D005146 ORTHO05D006752 1.7e-109 399.8 241 77.6
vmacro21720 Vaccinium macrocarpon HOM05D005146 ORTHO05D006752 7.0e-108 394.4 221 85.5
SMO146G0393 Selaginella moellendorffii HOM05D005146 ORTHO05D006752 7.7e-107 391.0 273 66.3
HPP92_026026 Vanilla planifolia HOM05D005146 ORTHO05D006752 5.0e-106 388.3 244 74.2
Hma1.2p1_0638F.1_g193760 Hydrangea macrophylla HOM05D005146 ORTHO05D006752 3.2e-105 385.6 220 83.6
CSS0032399 Camellia sinensis var. sinensis HOM05D005146 ORTHO05D006752 3.8e-98 362.1 251 73.3
CBR_g41468 Chara braunii HOM05D005146 ORTHO05D006752 3.8e-98 362.1 271 63.1
Lsat_1_v5_gn_2_8681 Lactuca sativa HOM05D004999 ORTHO05D007513 7.2e-97 357.8 222 77.0
Cre05.g233300 Chlamydomonas reinhardtii HOM05D005146 ORTHO05D006752 1.6e-96 356.7 271 64.2
TAR628G0140 Trochodendron aralioides HOM05D005146 ORTHO05D006752 5.2e-95 351.7 196 85.2
C09p44220 Brassica napus HOM05D005146 ORTHO05D006752 3.7e-93 345.5 272 65.1
BolC8t49001H Brassica oleracea HOM05D005146 ORTHO05D006752 2.4e-92 342.8 271 66.1
C08p13630 Brassica napus HOM05D005146 ORTHO05D006752 9.2e-92 340.9 271 65.7
MCO08G273 Micromonas commoda HOM05D005146 ORTHO05D006752 1.9e-89 333.2 271 59.0
PRCOL_00004436 Prasinoderma coloniale HOM05D005146 ORTHO05D006752 2.0e-86 323.2 288 56.9
BcaC04g20385 Brassica carinata HOM05D005146 ORTHO05D006752 1.3e-85 320.5 273 61.9
Sc26g0004380 Simmondsia chinensis HOM05D005146 ORTHO05D006752 5.0e-82 308.5 178 79.8
BcaC04g20389 Brassica carinata HOM05D005146 ORTHO05D006752 3.1e-79 299.3 272 58.5
Haze_26822 Corylus avellana HOM05D005146 ORTHO05D006752 8.3e-77 291.2 276 52.5
Oeu039057.1 Olea europaea HOM05D005146 ORTHO05D006752 1.9e-76 290.0 240 63.3
ATR0816G001 Amborella trichopoda HOM05D005146 ORTHO05D006752 2.1e-72 276.6 168 78.6
MSTRG.25237 Avicennia marina HOM05D005146 ORTHO05D006752 2.2e-69 266.5 152 80.3
Lj4A797T61 Lonicera japonica HOM05D005146 ORTHO05D006752 3.5e-67 259.2 152 83.6
Medtr1g107520 Medicago truncatula HOM05D005146 ORTHO05D006752 7.3e-65 251.5 165 76.4
AUR62036170 Chenopodium quinoa HOM05D005146 ORTHO05D006752 6.2e-64 248.4 205 63.9
BolC9t57294H Brassica oleracea HOM05D005146 ORTHO05D006752 1.9e-57 226.9 154 72.7
BcaC04g20387 Brassica carinata HOM05D005146 ORTHO05D006752 6.2e-56 221.9 273 48.7
CSS0002428 Camellia sinensis var. sinensis HOM05D005146 ORTHO05D006752 3.9e-50 202.6 270 47.0
Duzib170G0783 Durio zibethinus HOM05D005146 ORTHO05D006752 1.9e-49 200.3 271 44.6
MELO3C029148.2 Cucumis melo HOM05D005146 ORTHO05D006752 4.5e-46 189.1 180 55.6
Medtr3g114210 Medicago truncatula HOM05D005146 ORTHO05D006752 7.6e-38 161.8 148 63.5
BolC8t52160H Brassica oleracea HOM05D005146 ORTHO05D032927 9.9e-38 161.4 265 43.0
BcaC07g41610 Brassica carinata HOM05D005146 ORTHO05D032927 4.2e-36 156.0 269 41.6
Lj4A797T60 Lonicera japonica HOM05D005146 ORTHO05D006752 3.0e-34 149.8 90 76.7
C08p46100 Brassica napus HOM05D005146 ORTHO05D032927 4.8e-32 142.5 261 40.6
BcaC04g20388 Brassica carinata HOM05D005146 ORTHO05D006752 2.4e-31 140.2 185 47.0
Lsat_1_v5_gn_2_8581 Lactuca sativa HOM05D000202 ORTHO05D000117 1.7e-29 134.0 135 50.4
Lsat_1_v5_gn_2_8661 Lactuca sativa HOM05D000202 ORTHO05D000117 1.4e-28 131.0 135 49.6
Oeu039054.1 Olea europaea HOM05D000784 ORTHO05D000116 1.2e-27 127.9 79 70.9
SEGI_30125 Sequoiadendron giganteum HOM05D005146 ORTHO05D006752 5.1e-26 122.5 92 65.2
CAN.G1688.3 Capsicum annuum HOM05D005146 ORTHO05D011342 4.6e-19 99.4 103 51.5
MELO3C032066.2 Cucumis melo HOM05D005146 ORTHO05D006752 3.3e-17 93.2 73 63.0
BcaNung04119 Brassica carinata HOM05D001941 ORTHO05D002198 1.4e-12 77.8 45 77.8
Actinidia16979 Actinidia chinensis HOM05D005146 ORTHO05D006752 1.6e-11 74.3 78 51.3
MELO3C033356.2 Cucumis melo HOM05D005146 ORTHO05D166957 2.8e-08 63.5 49 61.2
Cfa017682 Carpinus fangiana HOM05D005146 ORTHO05D123472 2.6e-06 57.0 45 68.9


User provided reference genes

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